Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0665

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0664 and Psyr_0665 are separated by 4 nucleotidesPsyr_0665 and Psyr_0666 overlap by 4 nucleotidesPsyr_0666 and Psyr_0667 are separated by 0 nucleotides Psyr_0664: Psyr_0664 - ABC transporter, at 752,808 to 753,599 _0664 Psyr_0665: Psyr_0665 - transport system permease protein, at 753,604 to 754,572 _0665 Psyr_0666: Psyr_0666 - transport system permease protein, at 754,569 to 755,558 _0666 Psyr_0667: Psyr_0667 - Periplasmic binding protein, at 755,559 to 756,479 _0667 Position (kb) 753 754 755Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 752.607 kb on + strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.607 kb on + strandat 752.608 kb on - strandat 752.608 kb on - strandat 752.608 kb on - strandat 752.632 kb on + strandat 752.638 kb on + strandat 752.638 kb on + strandat 752.638 kb on + strandat 752.638 kb on + strandat 752.639 kb on - strandat 752.650 kb on - strandat 752.679 kb on - strandat 752.679 kb on - strandat 752.761 kb on + strandat 752.761 kb on + strandat 752.761 kb on + strandat 752.761 kb on + strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.762 kb on - strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.886 kb on + strandat 752.887 kb on - strandat 752.887 kb on - strandat 752.887 kb on - strandat 752.887 kb on - strandat 753.021 kb on - strand, within Psyr_0664at 753.094 kb on + strand, within Psyr_0664at 753.094 kb on + strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.095 kb on - strand, within Psyr_0664at 753.102 kb on - strand, within Psyr_0664at 753.318 kb on + strand, within Psyr_0664at 753.594 kb on - strandat 753.594 kb on - strandat 753.765 kb on - strand, within Psyr_0665at 753.894 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.572 kb on + strandat 754.588 kb on - strandat 754.842 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.408 kb on - strand, within Psyr_0666at 755.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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752,607 + -1.1
752,607 + +1.1
752,607 + +1.5
752,607 + -0.5
752,607 + +0.8
752,608 - -1.5
752,608 - -1.1
752,608 - -1.2
752,632 + +0.3
752,638 + +0.5
752,638 + -0.5
752,638 + +0.7
752,638 + +2.0
752,639 - +0.3
752,650 - -0.2
752,679 - +0.0
752,679 - -0.0
752,761 + -0.7
752,761 + -0.1
752,761 + +0.4
752,761 + +0.1
752,762 - +1.0
752,762 - +1.0
752,762 - +0.0
752,762 - -1.3
752,762 - +1.8
752,886 + +1.6
752,886 + -1.0
752,886 + -0.1
752,886 + -0.7
752,886 + -0.4
752,887 - -1.3
752,887 - -0.7
752,887 - +0.7
752,887 - +0.7
753,021 - Psyr_0664 0.27 +0.5
753,094 + Psyr_0664 0.36 +0.0
753,094 + Psyr_0664 0.36 -0.4
753,095 - Psyr_0664 0.36 -0.3
753,095 - Psyr_0664 0.36 -0.3
753,095 - Psyr_0664 0.36 -1.0
753,095 - Psyr_0664 0.36 -2.0
753,095 - Psyr_0664 0.36 -2.1
753,095 - Psyr_0664 0.36 -2.8
753,095 - Psyr_0664 0.36 -0.8
753,102 - Psyr_0664 0.37 -1.2
753,318 + Psyr_0664 0.64 +0.6
753,594 - -0.5
753,594 - -1.1
753,765 - Psyr_0665 0.17 +1.7
753,894 + Psyr_0665 0.30 +0.6
754,181 + Psyr_0665 0.60 +2.1
754,181 + Psyr_0665 0.60 -0.4
754,181 + Psyr_0665 0.60 -0.4
754,181 + Psyr_0665 0.60 +0.3
754,181 + Psyr_0665 0.60 -1.6
754,181 + Psyr_0665 0.60 +1.4
754,181 + Psyr_0665 0.60 +1.5
754,181 + Psyr_0665 0.60 +1.5
754,181 + Psyr_0665 0.60 +0.1
754,181 + Psyr_0665 0.60 +0.0
754,182 - Psyr_0665 0.60 +1.0
754,182 - Psyr_0665 0.60 +0.1
754,182 - Psyr_0665 0.60 -0.3
754,182 - Psyr_0665 0.60 +0.8
754,182 - Psyr_0665 0.60 +2.4
754,182 - Psyr_0665 0.60 +0.5
754,182 - Psyr_0665 0.60 +1.1
754,182 - Psyr_0665 0.60 -0.1
754,182 - Psyr_0665 0.60 +1.7
754,182 - Psyr_0665 0.60 +4.2
754,182 - Psyr_0665 0.60 +0.1
754,182 - Psyr_0665 0.60 +1.3
754,572 + -0.1
754,588 - -0.7
754,842 + Psyr_0666 0.28 +0.5
755,407 + Psyr_0666 0.85 +1.5
755,407 + Psyr_0666 0.85 -0.9
755,407 + Psyr_0666 0.85 +0.9
755,407 + Psyr_0666 0.85 -1.0
755,407 + Psyr_0666 0.85 +3.1
755,407 + Psyr_0666 0.85 -0.8
755,408 - Psyr_0666 0.85 +1.9
755,561 - -2.4

Or see this region's nucleotide sequence