Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0570 and Psyr_0571 are separated by 0 nucleotides Psyr_0571 and Psyr_0572 are separated by 93 nucleotides Psyr_0572 and Psyr_0573 are separated by 12 nucleotides
Psyr_0570: Psyr_0570 - DNA mismatch repair protein MutL, at 647,607 to 649,553
_0570
Psyr_0571: Psyr_0571 - tRNA isopentenyltransferase, at 649,554 to 650,525
_0571
Psyr_0572: Psyr_0572 - RNA-binding protein Hfq, at 650,619 to 650,879
_0572
Psyr_0573: Psyr_0573 - GTP-binding protein HflX, at 650,892 to 652,193
_0573
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.630 kb on + strand, within Psyr_0570 at 648.630 kb on + strand, within Psyr_0570 at 648.630 kb on + strand, within Psyr_0570 at 648.630 kb on + strand, within Psyr_0570 at 648.846 kb on + strand, within Psyr_0570 at 648.853 kb on - strand, within Psyr_0570 at 649.007 kb on + strand, within Psyr_0570 at 649.007 kb on + strand, within Psyr_0570 at 649.007 kb on + strand, within Psyr_0570 at 649.008 kb on - strand, within Psyr_0570 at 649.008 kb on - strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.012 kb on - strand, within Psyr_0570 at 649.012 kb on - strand, within Psyr_0570 at 649.012 kb on - strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.081 kb on - strand, within Psyr_0570 at 649.096 kb on + strand, within Psyr_0570 at 649.096 kb on + strand, within Psyr_0570 at 649.534 kb on + strand at 649.534 kb on + strand at 649.565 kb on - strand at 649.622 kb on - strand at 649.774 kb on - strand, within Psyr_0571 at 649.839 kb on - strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.863 kb on - strand, within Psyr_0571 at 650.015 kb on + strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.062 kb on - strand, within Psyr_0571 at 650.154 kb on + strand, within Psyr_0571 at 650.155 kb on - strand, within Psyr_0571 at 650.218 kb on + strand, within Psyr_0571 at 650.428 kb on + strand at 650.432 kb on + strand at 650.432 kb on + strand at 650.536 kb on + strand at 650.536 kb on + strand at 650.544 kb on + strand at 650.585 kb on + strand at 650.588 kb on + strand at 650.593 kb on + strand at 650.881 kb on - strand at 651.060 kb on + strand, within Psyr_0573 at 651.060 kb on + strand, within Psyr_0573 at 651.060 kb on + strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.204 kb on - strand, within Psyr_0573 at 651.508 kb on - strand, within Psyr_0573 at 651.509 kb on + strand, within Psyr_0573 at 651.509 kb on + strand, within Psyr_0573 at 651.509 kb on + strand, within Psyr_0573
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 648,628 + Psyr_0570 0.52 -1.7 648,628 + Psyr_0570 0.52 -2.1 648,628 + Psyr_0570 0.52 -0.4 648,628 + Psyr_0570 0.52 +1.4 648,628 + Psyr_0570 0.52 -0.7 648,628 + Psyr_0570 0.52 -0.3 648,628 + Psyr_0570 0.52 -0.4 648,628 + Psyr_0570 0.52 +1.3 648,628 + Psyr_0570 0.52 -1.6 648,628 + Psyr_0570 0.52 +0.3 648,628 + Psyr_0570 0.52 +1.0 648,628 + Psyr_0570 0.52 +0.9 648,628 + Psyr_0570 0.52 -0.1 648,629 - Psyr_0570 0.52 -2.5 648,629 - Psyr_0570 0.52 -0.0 648,629 - Psyr_0570 0.52 -0.0 648,629 - Psyr_0570 0.52 -0.4 648,629 - Psyr_0570 0.52 -1.2 648,629 - Psyr_0570 0.52 +1.3 648,629 - Psyr_0570 0.52 -0.1 648,629 - Psyr_0570 0.52 +0.7 648,629 - Psyr_0570 0.52 -1.9 648,629 - Psyr_0570 0.52 -1.7 648,630 + Psyr_0570 0.53 -0.6 648,630 + Psyr_0570 0.53 +0.9 648,630 + Psyr_0570 0.53 -2.9 648,630 + Psyr_0570 0.53 -0.3 648,846 + Psyr_0570 0.64 -1.0 648,853 - Psyr_0570 0.64 -2.0 649,007 + Psyr_0570 0.72 -0.0 649,007 + Psyr_0570 0.72 -0.2 649,007 + Psyr_0570 0.72 +0.2 649,008 - Psyr_0570 0.72 -0.3 649,008 - Psyr_0570 0.72 +0.8 649,011 + Psyr_0570 0.72 +0.2 649,011 + Psyr_0570 0.72 +0.9 649,011 + Psyr_0570 0.72 +1.4 649,011 + Psyr_0570 0.72 -1.2 649,011 + Psyr_0570 0.72 +0.1 649,011 + Psyr_0570 0.72 -1.4 649,011 + Psyr_0570 0.72 +0.9 649,011 + Psyr_0570 0.72 +0.4 649,012 - Psyr_0570 0.72 -1.2 649,012 - Psyr_0570 0.72 -1.0 649,012 - Psyr_0570 0.72 -1.4 649,080 + Psyr_0570 0.76 -0.1 649,080 + Psyr_0570 0.76 +1.6 649,080 + Psyr_0570 0.76 -0.0 649,080 + Psyr_0570 0.76 +1.8 649,080 + Psyr_0570 0.76 +0.2 649,080 + Psyr_0570 0.76 +1.1 649,080 + Psyr_0570 0.76 +3.2 649,080 + Psyr_0570 0.76 -2.0 649,080 + Psyr_0570 0.76 -1.7 649,081 - Psyr_0570 0.76 -1.7 649,081 - Psyr_0570 0.76 -1.2 649,081 - Psyr_0570 0.76 -0.0 649,081 - Psyr_0570 0.76 +2.6 649,081 - Psyr_0570 0.76 -1.6 649,096 + Psyr_0570 0.76 -0.9 649,096 + Psyr_0570 0.76 -1.5 649,534 + -1.0 649,534 + -1.4 649,565 - -1.6 649,622 - +1.2 649,774 - Psyr_0571 0.23 +0.1 649,839 - Psyr_0571 0.29 -1.2 649,862 + Psyr_0571 0.32 -0.0 649,862 + Psyr_0571 0.32 +0.3 649,862 + Psyr_0571 0.32 +1.0 649,863 - Psyr_0571 0.32 +0.8 650,015 + Psyr_0571 0.47 -0.8 650,016 - Psyr_0571 0.48 -1.0 650,016 - Psyr_0571 0.48 -0.4 650,016 - Psyr_0571 0.48 +1.6 650,016 - Psyr_0571 0.48 -2.2 650,062 - Psyr_0571 0.52 -0.8 650,154 + Psyr_0571 0.62 -0.4 650,155 - Psyr_0571 0.62 +0.6 650,218 + Psyr_0571 0.68 -1.6 650,428 + -1.2 650,432 + -0.9 650,432 + -1.2 650,536 + +0.4 650,536 + -1.4 650,544 + +0.3 650,585 + -3.1 650,588 + +0.8 650,593 + -2.2 650,881 - -0.4 651,060 + Psyr_0573 0.13 -0.4 651,060 + Psyr_0573 0.13 +1.6 651,060 + Psyr_0573 0.13 -1.2 651,061 - Psyr_0573 0.13 -0.6 651,061 - Psyr_0573 0.13 -1.2 651,061 - Psyr_0573 0.13 +2.6 651,061 - Psyr_0573 0.13 -0.5 651,061 - Psyr_0573 0.13 +0.3 651,204 - Psyr_0573 0.24 +1.2 651,508 - Psyr_0573 0.47 +0.5 651,509 + Psyr_0573 0.47 -1.2 651,509 + Psyr_0573 0.47 -0.3 651,509 + Psyr_0573 0.47 -1.4
Or see this region's nucleotide sequence