Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0528 and Psyr_0529 overlap by 17 nucleotides Psyr_0529 and Psyr_0530 overlap by 1 nucleotides Psyr_0530 and Psyr_0531 overlap by 4 nucleotides
Psyr_0528: Psyr_0528 - Carbamoyltransferase, at 595,978 to 597,735
_0528
Psyr_0529: Psyr_0529 - Glycosyl transferase, group 1, at 597,719 to 598,849
_0529
Psyr_0530: Psyr_0530 - Mig-14, at 598,849 to 599,745
_0530
Psyr_0531: Psyr_0531 - LmbE-like protein, at 599,742 to 601,151
_0531
Position (kb) 597
598
599 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 596.749 kb on + strand, within Psyr_0528 at 596.749 kb on + strand, within Psyr_0528 at 597.043 kb on + strand, within Psyr_0528 at 597.043 kb on + strand, within Psyr_0528 at 597.043 kb on + strand, within Psyr_0528 at 597.122 kb on + strand, within Psyr_0528 at 597.122 kb on + strand, within Psyr_0528 at 597.520 kb on + strand, within Psyr_0528 at 597.718 kb on + strand at 597.718 kb on + strand at 597.719 kb on - strand at 597.744 kb on + strand at 597.764 kb on + strand at 597.797 kb on + strand at 597.797 kb on + strand at 597.912 kb on - strand, within Psyr_0529 at 597.912 kb on - strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.022 kb on + strand, within Psyr_0529 at 598.023 kb on - strand, within Psyr_0529 at 598.023 kb on - strand, within Psyr_0529 at 598.023 kb on - strand, within Psyr_0529 at 598.026 kb on + strand, within Psyr_0529 at 598.026 kb on + strand, within Psyr_0529 at 598.217 kb on + strand, within Psyr_0529 at 598.517 kb on + strand, within Psyr_0529 at 598.517 kb on + strand, within Psyr_0529 at 598.685 kb on - strand, within Psyr_0529 at 598.799 kb on - strand at 599.218 kb on - strand, within Psyr_0530
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 596,749 + Psyr_0528 0.44 -0.7 596,749 + Psyr_0528 0.44 -2.6 597,043 + Psyr_0528 0.61 -0.9 597,043 + Psyr_0528 0.61 +1.2 597,043 + Psyr_0528 0.61 -0.7 597,122 + Psyr_0528 0.65 +1.6 597,122 + Psyr_0528 0.65 +0.0 597,520 + Psyr_0528 0.88 -0.7 597,718 + -1.2 597,718 + -1.8 597,719 - -2.1 597,744 + +0.7 597,764 + -3.8 597,797 + -2.8 597,797 + -3.7 597,912 - Psyr_0529 0.17 +0.6 597,912 - Psyr_0529 0.17 -0.1 598,022 + Psyr_0529 0.27 -1.7 598,022 + Psyr_0529 0.27 -3.4 598,022 + Psyr_0529 0.27 -1.9 598,022 + Psyr_0529 0.27 -1.0 598,022 + Psyr_0529 0.27 -0.6 598,022 + Psyr_0529 0.27 -1.6 598,022 + Psyr_0529 0.27 -1.6 598,022 + Psyr_0529 0.27 -1.7 598,023 - Psyr_0529 0.27 +0.6 598,023 - Psyr_0529 0.27 -1.6 598,023 - Psyr_0529 0.27 -3.1 598,026 + Psyr_0529 0.27 -0.7 598,026 + Psyr_0529 0.27 -2.3 598,217 + Psyr_0529 0.44 +0.6 598,517 + Psyr_0529 0.71 -3.0 598,517 + Psyr_0529 0.71 -2.9 598,685 - Psyr_0529 0.85 -1.4 598,799 - -0.7 599,218 - Psyr_0530 0.41 -2.0
Or see this region's nucleotide sequence