Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0496

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0495 and Psyr_0496 are separated by 169 nucleotidesPsyr_0496 and Psyr_0497 are separated by 15 nucleotidesPsyr_0497 and Psyr_0498 are separated by 2 nucleotides Psyr_0495: Psyr_0495 - transcriptional regulator, GntR family, at 537,156 to 537,905 _0495 Psyr_0496: Psyr_0496 - membrane protein, putative, at 538,075 to 539,307 _0496 Psyr_0497: Psyr_0497 - LamB/YcsF, at 539,323 to 540,087 _0497 Psyr_0498: Psyr_0498 - Protein of unknown function DUF1445, at 540,090 to 540,884 _0498 Position (kb) 538 539 540Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 537.127 kb on + strandat 537.127 kb on + strandat 537.127 kb on + strandat 537.127 kb on + strandat 537.128 kb on - strandat 537.128 kb on - strandat 537.214 kb on + strandat 537.214 kb on + strandat 537.215 kb on - strandat 537.293 kb on - strand, within Psyr_0495at 537.364 kb on + strand, within Psyr_0495at 537.365 kb on - strand, within Psyr_0495at 537.365 kb on - strand, within Psyr_0495at 537.365 kb on - strand, within Psyr_0495at 537.520 kb on + strand, within Psyr_0495at 537.520 kb on + strand, within Psyr_0495at 537.566 kb on - strand, within Psyr_0495at 537.569 kb on + strand, within Psyr_0495at 537.570 kb on - strand, within Psyr_0495at 537.651 kb on + strand, within Psyr_0495at 537.652 kb on - strand, within Psyr_0495at 537.674 kb on + strand, within Psyr_0495at 537.674 kb on + strand, within Psyr_0495at 537.803 kb on + strand, within Psyr_0495at 537.804 kb on - strand, within Psyr_0495at 537.821 kb on + strand, within Psyr_0495at 537.910 kb on + strandat 537.967 kb on - strandat 537.981 kb on + strandat 537.982 kb on - strandat 537.995 kb on - strandat 537.995 kb on - strandat 537.998 kb on + strandat 538.051 kb on - strandat 538.256 kb on + strand, within Psyr_0496at 538.256 kb on + strand, within Psyr_0496at 538.257 kb on - strand, within Psyr_0496at 538.257 kb on - strand, within Psyr_0496at 538.376 kb on + strand, within Psyr_0496at 538.376 kb on + strand, within Psyr_0496at 538.675 kb on + strand, within Psyr_0496at 538.675 kb on + strand, within Psyr_0496at 538.675 kb on + strand, within Psyr_0496at 538.675 kb on + strand, within Psyr_0496at 538.676 kb on - strand, within Psyr_0496at 538.676 kb on - strand, within Psyr_0496at 538.676 kb on - strand, within Psyr_0496at 538.676 kb on - strand, within Psyr_0496at 538.677 kb on + strand, within Psyr_0496at 538.677 kb on + strand, within Psyr_0496at 538.678 kb on - strand, within Psyr_0496at 538.684 kb on + strand, within Psyr_0496at 538.684 kb on + strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.792 kb on + strand, within Psyr_0496at 538.793 kb on - strand, within Psyr_0496at 538.793 kb on - strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.969 kb on + strand, within Psyr_0496at 538.969 kb on + strand, within Psyr_0496at 538.969 kb on + strand, within Psyr_0496at 538.969 kb on + strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.972 kb on - strand, within Psyr_0496at 538.972 kb on - strand, within Psyr_0496at 538.972 kb on - strand, within Psyr_0496at 538.972 kb on - strand, within Psyr_0496at 539.066 kb on + strand, within Psyr_0496at 539.066 kb on + strand, within Psyr_0496at 539.067 kb on - strand, within Psyr_0496at 539.067 kb on - strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.222 kb on + strandat 539.254 kb on + strandat 539.254 kb on + strandat 539.254 kb on + strandat 539.254 kb on + strandat 539.254 kb on + strandat 539.255 kb on - strandat 539.255 kb on - strandat 539.255 kb on - strandat 539.255 kb on - strandat 539.280 kb on + strandat 539.281 kb on - strandat 539.333 kb on + strandat 539.333 kb on + strandat 539.333 kb on + strandat 539.333 kb on + strandat 539.334 kb on - strandat 539.334 kb on - strandat 539.334 kb on - strandat 539.334 kb on - strandat 539.590 kb on + strand, within Psyr_0497at 539.590 kb on + strand, within Psyr_0497at 539.590 kb on + strand, within Psyr_0497at 539.591 kb on - strand, within Psyr_0497at 539.591 kb on - strand, within Psyr_0497at 539.644 kb on + strand, within Psyr_0497at 539.645 kb on - strand, within Psyr_0497at 539.645 kb on - strand, within Psyr_0497at 539.668 kb on + strand, within Psyr_0497at 539.668 kb on + strand, within Psyr_0497at 539.669 kb on - strand, within Psyr_0497at 539.669 kb on - strand, within Psyr_0497at 539.834 kb on - strand, within Psyr_0497at 539.834 kb on - strand, within Psyr_0497at 540.228 kb on + strand, within Psyr_0498at 540.228 kb on + strand, within Psyr_0498at 540.229 kb on - strand, within Psyr_0498

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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537,127 + +0.6
537,127 + -1.6
537,127 + +0.4
537,127 + +1.4
537,128 - -0.8
537,128 - +0.2
537,214 + -0.1
537,214 + -0.0
537,215 - +0.8
537,293 - Psyr_0495 0.18 -2.6
537,364 + Psyr_0495 0.28 +0.1
537,365 - Psyr_0495 0.28 +1.0
537,365 - Psyr_0495 0.28 +0.9
537,365 - Psyr_0495 0.28 -0.2
537,520 + Psyr_0495 0.49 -0.2
537,520 + Psyr_0495 0.49 +0.2
537,566 - Psyr_0495 0.55 +2.1
537,569 + Psyr_0495 0.55 -3.6
537,570 - Psyr_0495 0.55 -0.8
537,651 + Psyr_0495 0.66 +1.3
537,652 - Psyr_0495 0.66 -0.3
537,674 + Psyr_0495 0.69 -0.7
537,674 + Psyr_0495 0.69 +0.5
537,803 + Psyr_0495 0.86 +0.6
537,804 - Psyr_0495 0.86 -0.2
537,821 + Psyr_0495 0.89 -1.3
537,910 + -0.0
537,967 - +1.3
537,981 + -0.3
537,982 - +0.3
537,995 - -0.3
537,995 - +0.4
537,998 + -0.5
538,051 - +1.0
538,256 + Psyr_0496 0.15 -0.5
538,256 + Psyr_0496 0.15 -0.7
538,257 - Psyr_0496 0.15 +3.4
538,257 - Psyr_0496 0.15 -0.6
538,376 + Psyr_0496 0.24 +0.1
538,376 + Psyr_0496 0.24 -2.8
538,675 + Psyr_0496 0.49 +1.6
538,675 + Psyr_0496 0.49 -0.4
538,675 + Psyr_0496 0.49 +0.7
538,675 + Psyr_0496 0.49 +0.2
538,676 - Psyr_0496 0.49 -0.2
538,676 - Psyr_0496 0.49 -1.8
538,676 - Psyr_0496 0.49 +0.4
538,676 - Psyr_0496 0.49 +0.2
538,677 + Psyr_0496 0.49 -1.9
538,677 + Psyr_0496 0.49 -1.7
538,678 - Psyr_0496 0.49 -0.1
538,684 + Psyr_0496 0.49 -0.8
538,684 + Psyr_0496 0.49 -2.4
538,685 - Psyr_0496 0.49 -0.7
538,685 - Psyr_0496 0.49 +0.8
538,685 - Psyr_0496 0.49 -1.7
538,685 - Psyr_0496 0.49 -0.4
538,685 - Psyr_0496 0.49 +0.1
538,742 + Psyr_0496 0.54 +0.0
538,742 + Psyr_0496 0.54 -1.4
538,742 + Psyr_0496 0.54 -1.4
538,742 + Psyr_0496 0.54 -0.9
538,742 + Psyr_0496 0.54 -0.2
538,742 + Psyr_0496 0.54 -0.1
538,743 - Psyr_0496 0.54 +0.6
538,743 - Psyr_0496 0.54 -0.7
538,743 - Psyr_0496 0.54 -0.1
538,743 - Psyr_0496 0.54 +0.1
538,743 - Psyr_0496 0.54 +0.8
538,743 - Psyr_0496 0.54 -0.4
538,743 - Psyr_0496 0.54 +1.4
538,792 + Psyr_0496 0.58 -0.4
538,793 - Psyr_0496 0.58 +1.4
538,793 - Psyr_0496 0.58 -0.2
538,796 + Psyr_0496 0.58 -0.3
538,796 + Psyr_0496 0.58 -0.8
538,796 + Psyr_0496 0.58 +1.2
538,796 + Psyr_0496 0.58 -1.1
538,796 + Psyr_0496 0.58 +0.9
538,797 - Psyr_0496 0.59 +0.5
538,797 - Psyr_0496 0.59 -0.8
538,797 - Psyr_0496 0.59 -1.0
538,797 - Psyr_0496 0.59 +1.9
538,797 - Psyr_0496 0.59 -1.4
538,797 - Psyr_0496 0.59 +0.0
538,969 + Psyr_0496 0.73 -1.1
538,969 + Psyr_0496 0.73 +0.6
538,969 + Psyr_0496 0.73 +0.0
538,969 + Psyr_0496 0.73 +1.2
538,970 - Psyr_0496 0.73 -0.4
538,970 - Psyr_0496 0.73 -0.0
538,970 - Psyr_0496 0.73 -0.7
538,970 - Psyr_0496 0.73 +1.5
538,970 - Psyr_0496 0.73 +0.0
538,970 - Psyr_0496 0.73 -0.4
538,970 - Psyr_0496 0.73 +1.0
538,970 - Psyr_0496 0.73 -2.0
538,971 + Psyr_0496 0.73 +1.2
538,971 + Psyr_0496 0.73 -1.2
538,971 + Psyr_0496 0.73 -0.4
538,971 + Psyr_0496 0.73 -0.7
538,971 + Psyr_0496 0.73 -0.7
538,971 + Psyr_0496 0.73 +1.4
538,971 + Psyr_0496 0.73 -0.5
538,971 + Psyr_0496 0.73 +1.2
538,971 + Psyr_0496 0.73 +0.3
538,972 - Psyr_0496 0.73 +0.0
538,972 - Psyr_0496 0.73 -1.2
538,972 - Psyr_0496 0.73 -0.2
538,972 - Psyr_0496 0.73 +0.0
539,066 + Psyr_0496 0.80 +1.3
539,066 + Psyr_0496 0.80 +1.5
539,067 - Psyr_0496 0.80 -0.9
539,067 - Psyr_0496 0.80 +1.0
539,068 + Psyr_0496 0.81 -1.8
539,068 + Psyr_0496 0.81 -0.6
539,068 + Psyr_0496 0.81 -1.0
539,069 - Psyr_0496 0.81 -1.4
539,069 - Psyr_0496 0.81 +0.2
539,069 - Psyr_0496 0.81 +0.9
539,069 - Psyr_0496 0.81 +1.3
539,069 - Psyr_0496 0.81 +0.5
539,161 + Psyr_0496 0.88 +0.1
539,161 + Psyr_0496 0.88 -0.6
539,161 + Psyr_0496 0.88 +0.6
539,161 + Psyr_0496 0.88 +1.1
539,161 + Psyr_0496 0.88 +0.3
539,161 + Psyr_0496 0.88 +0.2
539,162 - Psyr_0496 0.88 -1.3
539,162 - Psyr_0496 0.88 -0.8
539,162 - Psyr_0496 0.88 -0.7
539,162 - Psyr_0496 0.88 +0.5
539,162 - Psyr_0496 0.88 -1.8
539,162 - Psyr_0496 0.88 -0.8
539,162 - Psyr_0496 0.88 -0.2
539,222 + -0.8
539,254 + +0.5
539,254 + +0.1
539,254 + +1.4
539,254 + +0.7
539,254 + -0.7
539,255 - +0.4
539,255 - +0.6
539,255 - +0.2
539,255 - -0.5
539,280 + +0.2
539,281 - +0.3
539,333 + -1.2
539,333 + -2.1
539,333 + +0.2
539,333 + +1.4
539,334 - +1.0
539,334 - +0.7
539,334 - -0.9
539,334 - +1.4
539,590 + Psyr_0497 0.35 -1.8
539,590 + Psyr_0497 0.35 -1.8
539,590 + Psyr_0497 0.35 +0.4
539,591 - Psyr_0497 0.35 +0.6
539,591 - Psyr_0497 0.35 +0.4
539,644 + Psyr_0497 0.42 -0.4
539,645 - Psyr_0497 0.42 -2.4
539,645 - Psyr_0497 0.42 -1.9
539,668 + Psyr_0497 0.45 +0.8
539,668 + Psyr_0497 0.45 -0.9
539,669 - Psyr_0497 0.45 -1.7
539,669 - Psyr_0497 0.45 +0.3
539,834 - Psyr_0497 0.67 -1.0
539,834 - Psyr_0497 0.67 +0.7
540,228 + Psyr_0498 0.17 +1.0
540,228 + Psyr_0498 0.17 +1.3
540,229 - Psyr_0498 0.17 +0.2

Or see this region's nucleotide sequence