Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0472 and Psyr_0473 are separated by 33 nucleotides Psyr_0473 and Psyr_0474 are separated by 7 nucleotides Psyr_0474 and Psyr_0475 are separated by 266 nucleotides Psyr_0475 and Psyr_0476 are separated by 25 nucleotides
Psyr_0472: Psyr_0472 - Ham1-like protein, at 511,604 to 512,197
_0472
Psyr_0473: Psyr_0473 - Methionine biosynthesis MetW, at 512,231 to 512,851
_0473
Psyr_0474: Psyr_0474 - homoserine O-acetyltransferase, at 512,859 to 513,998
_0474
Psyr_0475: Psyr_0475 - Protein of unknown function YGGT, at 514,265 to 514,855
_0475
Psyr_0476: Psyr_0476 - pyrroline-5-carboxylate reductase, at 514,881 to 515,699
_0476
Position (kb) 512
513
514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 511.944 kb on + strand, within Psyr_0472 at 511.944 kb on + strand, within Psyr_0472 at 511.944 kb on + strand, within Psyr_0472 at 511.944 kb on + strand, within Psyr_0472 at 511.944 kb on + strand, within Psyr_0472 at 511.944 kb on + strand, within Psyr_0472 at 511.944 kb on + strand, within Psyr_0472 at 511.944 kb on + strand, within Psyr_0472 at 511.944 kb on + strand, within Psyr_0472 at 511.944 kb on + strand, within Psyr_0472 at 511.945 kb on - strand, within Psyr_0472 at 511.945 kb on - strand, within Psyr_0472 at 511.945 kb on - strand, within Psyr_0472 at 511.945 kb on - strand, within Psyr_0472 at 511.945 kb on - strand, within Psyr_0472 at 511.945 kb on - strand, within Psyr_0472 at 511.948 kb on + strand, within Psyr_0472 at 512.277 kb on + strand at 512.277 kb on + strand at 512.303 kb on - strand, within Psyr_0473 at 512.436 kb on + strand, within Psyr_0473 at 512.437 kb on - strand, within Psyr_0473 at 512.443 kb on + strand, within Psyr_0473 at 512.444 kb on - strand, within Psyr_0473 at 512.444 kb on - strand, within Psyr_0473 at 512.445 kb on + strand, within Psyr_0473 at 512.445 kb on + strand, within Psyr_0473 at 512.445 kb on + strand, within Psyr_0473 at 512.446 kb on - strand, within Psyr_0473 at 512.446 kb on - strand, within Psyr_0473 at 512.446 kb on - strand, within Psyr_0473 at 512.490 kb on + strand, within Psyr_0473 at 512.490 kb on + strand, within Psyr_0473 at 512.491 kb on - strand, within Psyr_0473 at 512.491 kb on - strand, within Psyr_0473 at 512.881 kb on + strand at 512.881 kb on + strand at 512.881 kb on + strand at 512.881 kb on + strand at 512.881 kb on + strand at 512.882 kb on - strand at 512.882 kb on - strand at 512.882 kb on - strand at 512.882 kb on - strand at 512.882 kb on - strand at 512.882 kb on - strand at 512.882 kb on - strand at 512.882 kb on - strand at 512.959 kb on + strand at 513.121 kb on + strand, within Psyr_0474 at 513.121 kb on + strand, within Psyr_0474 at 513.122 kb on - strand, within Psyr_0474 at 513.148 kb on + strand, within Psyr_0474 at 513.148 kb on + strand, within Psyr_0474 at 513.148 kb on + strand, within Psyr_0474 at 513.148 kb on + strand, within Psyr_0474 at 513.149 kb on - strand, within Psyr_0474 at 513.149 kb on - strand, within Psyr_0474 at 513.152 kb on + strand, within Psyr_0474 at 513.153 kb on - strand, within Psyr_0474 at 513.153 kb on - strand, within Psyr_0474 at 513.199 kb on + strand, within Psyr_0474 at 513.199 kb on + strand, within Psyr_0474 at 513.200 kb on - strand, within Psyr_0474 at 513.200 kb on - strand, within Psyr_0474 at 513.200 kb on - strand, within Psyr_0474 at 513.200 kb on - strand, within Psyr_0474 at 513.235 kb on + strand, within Psyr_0474 at 513.235 kb on + strand, within Psyr_0474 at 513.235 kb on + strand, within Psyr_0474 at 513.236 kb on - strand, within Psyr_0474 at 513.236 kb on - strand, within Psyr_0474 at 513.236 kb on - strand, within Psyr_0474 at 513.236 kb on - strand, within Psyr_0474 at 513.298 kb on + strand, within Psyr_0474 at 513.298 kb on + strand, within Psyr_0474 at 513.299 kb on - strand, within Psyr_0474 at 513.299 kb on - strand, within Psyr_0474 at 513.299 kb on - strand, within Psyr_0474 at 513.299 kb on - strand, within Psyr_0474 at 513.723 kb on - strand, within Psyr_0474 at 513.874 kb on + strand, within Psyr_0474 at 513.874 kb on + strand, within Psyr_0474 at 513.875 kb on - strand, within Psyr_0474 at 513.875 kb on - strand, within Psyr_0474 at 513.883 kb on + strand, within Psyr_0474 at 513.883 kb on + strand, within Psyr_0474 at 513.895 kb on + strand at 513.895 kb on + strand at 513.896 kb on - strand at 513.896 kb on - strand at 513.896 kb on - strand at 513.988 kb on - strand at 514.015 kb on + strand at 514.016 kb on - strand at 514.026 kb on + strand at 514.026 kb on + strand at 514.026 kb on + strand at 514.026 kb on + strand at 514.026 kb on + strand at 514.026 kb on + strand at 514.026 kb on + strand at 514.027 kb on - strand at 514.027 kb on - strand at 514.027 kb on - strand at 514.032 kb on + strand at 514.032 kb on + strand at 514.058 kb on - strand at 514.064 kb on + strand at 514.064 kb on + strand at 514.092 kb on + strand at 514.092 kb on + strand at 514.092 kb on + strand at 514.092 kb on + strand at 514.093 kb on - strand at 514.093 kb on - strand at 514.096 kb on + strand at 514.096 kb on + strand at 514.096 kb on + strand at 514.097 kb on - strand at 514.097 kb on - strand at 514.107 kb on + strand at 514.107 kb on + strand at 514.108 kb on - strand at 514.108 kb on - strand at 514.108 kb on - strand at 514.108 kb on - strand at 514.108 kb on - strand at 514.146 kb on + strand at 514.147 kb on - strand at 514.147 kb on - strand at 514.148 kb on + strand at 514.148 kb on + strand at 514.148 kb on + strand at 514.148 kb on + strand at 514.148 kb on + strand at 514.149 kb on - strand at 514.149 kb on - strand at 514.149 kb on - strand at 514.149 kb on - strand at 514.149 kb on - strand at 514.163 kb on + strand at 514.163 kb on + strand at 514.163 kb on + strand at 514.163 kb on + strand at 514.163 kb on + strand at 514.163 kb on + strand at 514.163 kb on + strand at 514.163 kb on + strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.164 kb on - strand at 514.167 kb on + strand at 514.266 kb on + strand at 514.266 kb on + strand at 514.266 kb on + strand at 514.266 kb on + strand at 514.266 kb on + strand at 514.266 kb on + strand at 514.266 kb on + strand at 514.266 kb on + strand at 514.266 kb on + strand at 514.266 kb on + strand at 514.266 kb on + strand at 514.266 kb on + strand at 514.266 kb on + strand at 514.267 kb on - strand at 514.267 kb on - strand at 514.267 kb on - strand at 514.267 kb on - strand at 514.267 kb on - strand at 514.267 kb on - strand at 514.267 kb on - strand at 514.267 kb on - strand at 514.267 kb on - strand at 514.267 kb on - strand at 514.267 kb on - strand at 514.267 kb on - strand at 514.303 kb on + strand at 514.746 kb on + strand, within Psyr_0475 at 514.746 kb on + strand, within Psyr_0475 at 514.746 kb on + strand, within Psyr_0475 at 514.746 kb on + strand, within Psyr_0475 at 514.746 kb on + strand, within Psyr_0475 at 514.746 kb on + strand, within Psyr_0475 at 514.787 kb on + strand, within Psyr_0475 at 514.787 kb on + strand, within Psyr_0475 at 514.787 kb on + strand, within Psyr_0475 at 514.788 kb on - strand, within Psyr_0475 at 514.800 kb on + strand at 514.828 kb on - strand at 514.828 kb on - strand at 514.828 kb on - strand at 514.828 kb on - strand at 514.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 511,944 + Psyr_0472 0.57 +0.8 511,944 + Psyr_0472 0.57 +0.9 511,944 + Psyr_0472 0.57 -2.1 511,944 + Psyr_0472 0.57 -1.0 511,944 + Psyr_0472 0.57 +1.0 511,944 + Psyr_0472 0.57 +0.6 511,944 + Psyr_0472 0.57 -2.0 511,944 + Psyr_0472 0.57 -0.4 511,944 + Psyr_0472 0.57 +0.5 511,944 + Psyr_0472 0.57 -2.6 511,945 - Psyr_0472 0.57 +0.1 511,945 - Psyr_0472 0.57 -0.1 511,945 - Psyr_0472 0.57 -1.2 511,945 - Psyr_0472 0.57 -1.4 511,945 - Psyr_0472 0.57 +2.6 511,945 - Psyr_0472 0.57 +0.3 511,948 + Psyr_0472 0.58 +0.0 512,277 + -2.4 512,277 + -0.4 512,303 - Psyr_0473 0.12 -0.8 512,436 + Psyr_0473 0.33 -1.0 512,437 - Psyr_0473 0.33 +0.8 512,443 + Psyr_0473 0.34 -1.5 512,444 - Psyr_0473 0.34 -1.5 512,444 - Psyr_0473 0.34 -2.9 512,445 + Psyr_0473 0.34 +0.1 512,445 + Psyr_0473 0.34 +2.4 512,445 + Psyr_0473 0.34 +0.9 512,446 - Psyr_0473 0.35 +0.7 512,446 - Psyr_0473 0.35 -0.7 512,446 - Psyr_0473 0.35 -1.4 512,490 + Psyr_0473 0.42 +1.6 512,490 + Psyr_0473 0.42 -2.8 512,491 - Psyr_0473 0.42 -0.7 512,491 - Psyr_0473 0.42 -0.9 512,881 + -1.3 512,881 + -2.4 512,881 + -1.7 512,881 + -2.3 512,881 + +2.0 512,882 - -0.1 512,882 - -2.0 512,882 - -1.6 512,882 - -0.4 512,882 - -3.3 512,882 - -2.9 512,882 - -2.5 512,882 - -1.4 512,959 + -2.5 513,121 + Psyr_0474 0.23 -1.2 513,121 + Psyr_0474 0.23 -1.4 513,122 - Psyr_0474 0.23 -0.4 513,148 + Psyr_0474 0.25 +1.4 513,148 + Psyr_0474 0.25 -2.8 513,148 + Psyr_0474 0.25 -1.6 513,148 + Psyr_0474 0.25 -1.3 513,149 - Psyr_0474 0.25 +0.6 513,149 - Psyr_0474 0.25 +0.1 513,152 + Psyr_0474 0.26 -0.1 513,153 - Psyr_0474 0.26 -0.7 513,153 - Psyr_0474 0.26 -1.2 513,199 + Psyr_0474 0.30 -0.1 513,199 + Psyr_0474 0.30 -0.7 513,200 - Psyr_0474 0.30 -1.2 513,200 - Psyr_0474 0.30 -0.1 513,200 - Psyr_0474 0.30 -1.0 513,200 - Psyr_0474 0.30 -2.9 513,235 + Psyr_0474 0.33 -1.0 513,235 + Psyr_0474 0.33 -1.4 513,235 + Psyr_0474 0.33 +0.6 513,236 - Psyr_0474 0.33 -1.9 513,236 - Psyr_0474 0.33 -1.0 513,236 - Psyr_0474 0.33 -1.9 513,236 - Psyr_0474 0.33 +0.6 513,298 + Psyr_0474 0.39 -0.4 513,298 + Psyr_0474 0.39 -0.6 513,299 - Psyr_0474 0.39 +0.0 513,299 - Psyr_0474 0.39 -0.1 513,299 - Psyr_0474 0.39 +0.0 513,299 - Psyr_0474 0.39 -1.3 513,723 - Psyr_0474 0.76 +0.4 513,874 + Psyr_0474 0.89 -1.1 513,874 + Psyr_0474 0.89 +0.9 513,875 - Psyr_0474 0.89 -1.0 513,875 - Psyr_0474 0.89 -0.7 513,883 + Psyr_0474 0.90 -1.1 513,883 + Psyr_0474 0.90 +0.6 513,895 + -1.0 513,895 + -2.0 513,896 - -1.5 513,896 - -0.3 513,896 - -1.7 513,988 - +0.4 514,015 + -1.1 514,016 - +1.0 514,026 + -0.2 514,026 + -1.6 514,026 + +2.6 514,026 + +1.3 514,026 + -0.4 514,026 + +0.0 514,026 + -0.3 514,027 - +0.5 514,027 - +1.4 514,027 - +0.2 514,032 + -1.8 514,032 + -0.6 514,058 - +0.3 514,064 + -3.0 514,064 + -0.5 514,092 + -0.7 514,092 + -0.4 514,092 + -0.8 514,092 + +0.6 514,093 - -1.4 514,093 - +0.4 514,096 + -0.4 514,096 + -2.8 514,096 + +1.0 514,097 - +0.2 514,097 - +1.0 514,107 + -1.4 514,107 + +0.2 514,108 - +1.1 514,108 - +0.6 514,108 - -0.6 514,108 - +1.3 514,108 - +0.9 514,146 + -0.1 514,147 - +4.2 514,147 - -1.6 514,148 + -0.2 514,148 + +0.3 514,148 + -1.1 514,148 + -2.4 514,148 + +1.2 514,149 - +2.9 514,149 - +0.0 514,149 - +0.0 514,149 - +0.3 514,149 - +0.2 514,163 + +0.9 514,163 + +0.2 514,163 + -2.9 514,163 + -0.9 514,163 + +0.1 514,163 + -2.0 514,163 + +0.5 514,163 + -0.6 514,164 - +1.1 514,164 - -1.7 514,164 - -0.2 514,164 - +4.5 514,164 - +1.9 514,164 - +2.8 514,164 - -0.1 514,164 - -0.8 514,164 - -2.5 514,164 - -0.2 514,164 - +0.4 514,164 - +1.3 514,164 - -0.7 514,164 - +0.3 514,164 - -1.8 514,167 + -0.1 514,266 + -1.8 514,266 + +0.6 514,266 + +1.4 514,266 + +0.8 514,266 + -0.7 514,266 + +0.8 514,266 + -0.0 514,266 + -0.1 514,266 + -1.9 514,266 + +4.2 514,266 + +0.0 514,266 + -2.4 514,266 + -1.7 514,267 - +0.9 514,267 - +0.0 514,267 - +0.3 514,267 - -0.1 514,267 - +0.7 514,267 - -0.8 514,267 - +0.7 514,267 - +0.5 514,267 - +1.8 514,267 - -0.7 514,267 - +0.8 514,267 - -0.4 514,303 + -0.1 514,746 + Psyr_0475 0.81 +0.6 514,746 + Psyr_0475 0.81 +1.0 514,746 + Psyr_0475 0.81 +0.8 514,746 + Psyr_0475 0.81 -0.1 514,746 + Psyr_0475 0.81 -0.7 514,746 + Psyr_0475 0.81 +0.0 514,787 + Psyr_0475 0.88 -0.7 514,787 + Psyr_0475 0.88 +0.7 514,787 + Psyr_0475 0.88 +0.4 514,788 - Psyr_0475 0.88 +0.6 514,800 + +0.5 514,828 - -1.6 514,828 - +1.4 514,828 - -1.4 514,828 - -1.5 514,828 - +1.0
Or see this region's nucleotide sequence