Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0330

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0329 and Psyr_0330 are separated by 466 nucleotidesPsyr_0330 and Psyr_0331 are separated by 35 nucleotides Psyr_0329: Psyr_0329 - Secretory lipase, at 347,986 to 349,239 _0329 Psyr_0330: Psyr_0330 - hypothetical protein, at 349,706 to 350,386 _0330 Psyr_0331: Psyr_0331 - AMP-dependent synthetase and ligase, at 350,422 to 351,963 _0331 Position (kb) 349 350 351Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 348.767 kb on + strand, within Psyr_0329at 348.767 kb on + strand, within Psyr_0329at 348.767 kb on + strand, within Psyr_0329at 348.768 kb on - strand, within Psyr_0329at 348.768 kb on - strand, within Psyr_0329at 348.815 kb on + strand, within Psyr_0329at 348.936 kb on + strand, within Psyr_0329at 348.937 kb on - strand, within Psyr_0329at 348.990 kb on + strand, within Psyr_0329at 348.991 kb on - strand, within Psyr_0329at 348.991 kb on - strand, within Psyr_0329at 348.992 kb on + strand, within Psyr_0329at 348.992 kb on + strand, within Psyr_0329at 348.993 kb on - strand, within Psyr_0329at 348.993 kb on - strand, within Psyr_0329at 348.993 kb on - strand, within Psyr_0329at 348.993 kb on - strand, within Psyr_0329at 348.993 kb on - strand, within Psyr_0329at 348.993 kb on - strand, within Psyr_0329at 348.993 kb on - strand, within Psyr_0329at 348.999 kb on + strand, within Psyr_0329at 348.999 kb on + strand, within Psyr_0329at 349.020 kb on + strand, within Psyr_0329at 349.086 kb on + strand, within Psyr_0329at 349.086 kb on + strand, within Psyr_0329at 349.086 kb on + strand, within Psyr_0329at 349.086 kb on + strand, within Psyr_0329at 349.086 kb on + strand, within Psyr_0329at 349.086 kb on + strand, within Psyr_0329at 349.087 kb on - strand, within Psyr_0329at 349.087 kb on - strand, within Psyr_0329at 349.100 kb on + strand, within Psyr_0329at 349.101 kb on - strand, within Psyr_0329at 349.101 kb on - strand, within Psyr_0329at 349.193 kb on - strandat 349.235 kb on + strandat 349.235 kb on + strandat 349.235 kb on + strandat 349.236 kb on - strandat 349.236 kb on - strandat 349.236 kb on - strandat 349.243 kb on + strandat 349.243 kb on + strandat 349.243 kb on + strandat 349.243 kb on + strandat 349.243 kb on + strandat 349.243 kb on + strandat 349.243 kb on + strandat 349.244 kb on - strandat 349.244 kb on - strandat 349.244 kb on - strandat 349.273 kb on + strandat 349.289 kb on - strandat 349.291 kb on + strandat 349.292 kb on - strandat 349.292 kb on - strandat 349.367 kb on - strandat 349.371 kb on + strandat 349.372 kb on - strandat 349.372 kb on - strandat 349.378 kb on - strandat 349.399 kb on + strandat 349.400 kb on - strandat 349.487 kb on - strandat 349.545 kb on - strandat 349.594 kb on - strandat 349.638 kb on + strandat 349.638 kb on + strandat 349.639 kb on - strandat 349.673 kb on + strandat 349.674 kb on - strandat 349.714 kb on - strandat 349.754 kb on + strandat 349.901 kb on + strand, within Psyr_0330at 349.938 kb on + strand, within Psyr_0330at 349.938 kb on + strand, within Psyr_0330at 349.938 kb on + strand, within Psyr_0330at 349.938 kb on + strand, within Psyr_0330at 349.938 kb on + strand, within Psyr_0330at 349.939 kb on - strand, within Psyr_0330at 349.939 kb on - strand, within Psyr_0330at 349.939 kb on - strand, within Psyr_0330at 349.939 kb on - strand, within Psyr_0330at 349.993 kb on + strand, within Psyr_0330at 350.003 kb on + strand, within Psyr_0330at 350.004 kb on - strand, within Psyr_0330at 350.004 kb on - strand, within Psyr_0330at 350.004 kb on - strand, within Psyr_0330at 350.004 kb on - strand, within Psyr_0330at 350.024 kb on + strand, within Psyr_0330at 350.031 kb on + strand, within Psyr_0330at 350.124 kb on - strand, within Psyr_0330at 350.329 kb on - strandat 350.337 kb on - strandat 350.338 kb on + strandat 350.338 kb on + strandat 350.338 kb on + strandat 350.338 kb on + strandat 350.339 kb on - strandat 350.339 kb on - strandat 350.339 kb on - strandat 350.339 kb on - strandat 350.351 kb on - strandat 350.354 kb on + strandat 350.354 kb on + strandat 350.354 kb on + strandat 350.354 kb on + strandat 350.354 kb on + strandat 350.355 kb on - strandat 350.355 kb on - strandat 350.355 kb on - strandat 350.355 kb on - strandat 350.355 kb on - strandat 350.355 kb on - strandat 350.385 kb on - strandat 350.452 kb on - strandat 350.461 kb on - strandat 350.461 kb on - strandat 350.484 kb on + strandat 350.532 kb on - strandat 350.585 kb on + strand, within Psyr_0331at 350.585 kb on + strand, within Psyr_0331at 350.585 kb on + strand, within Psyr_0331at 350.585 kb on + strand, within Psyr_0331at 350.586 kb on - strand, within Psyr_0331at 350.586 kb on - strand, within Psyr_0331at 350.586 kb on - strand, within Psyr_0331at 350.586 kb on - strand, within Psyr_0331at 350.586 kb on - strand, within Psyr_0331at 350.626 kb on + strand, within Psyr_0331at 350.626 kb on + strand, within Psyr_0331at 350.626 kb on + strand, within Psyr_0331at 350.626 kb on + strand, within Psyr_0331at 350.626 kb on + strand, within Psyr_0331at 350.626 kb on + strand, within Psyr_0331at 350.627 kb on - strand, within Psyr_0331at 350.627 kb on - strand, within Psyr_0331at 350.627 kb on - strand, within Psyr_0331at 350.627 kb on - strand, within Psyr_0331at 350.627 kb on - strand, within Psyr_0331at 350.819 kb on + strand, within Psyr_0331at 350.819 kb on + strand, within Psyr_0331at 350.819 kb on + strand, within Psyr_0331at 350.819 kb on + strand, within Psyr_0331at 350.820 kb on - strand, within Psyr_0331at 350.820 kb on - strand, within Psyr_0331at 350.820 kb on - strand, within Psyr_0331at 350.820 kb on - strand, within Psyr_0331at 350.820 kb on - strand, within Psyr_0331at 350.820 kb on - strand, within Psyr_0331at 350.888 kb on + strand, within Psyr_0331at 350.888 kb on + strand, within Psyr_0331at 350.889 kb on - strand, within Psyr_0331at 350.921 kb on + strand, within Psyr_0331at 350.921 kb on + strand, within Psyr_0331at 350.921 kb on + strand, within Psyr_0331at 350.922 kb on - strand, within Psyr_0331at 350.922 kb on - strand, within Psyr_0331at 350.926 kb on + strand, within Psyr_0331at 350.926 kb on + strand, within Psyr_0331at 350.926 kb on + strand, within Psyr_0331at 350.926 kb on + strand, within Psyr_0331at 350.926 kb on + strand, within Psyr_0331at 350.927 kb on - strand, within Psyr_0331at 350.927 kb on - strand, within Psyr_0331at 350.927 kb on - strand, within Psyr_0331at 350.927 kb on - strand, within Psyr_0331at 350.928 kb on + strand, within Psyr_0331at 350.960 kb on + strand, within Psyr_0331at 350.960 kb on + strand, within Psyr_0331at 350.960 kb on + strand, within Psyr_0331at 350.961 kb on + strand, within Psyr_0331at 351.010 kb on + strand, within Psyr_0331at 351.011 kb on - strand, within Psyr_0331at 351.046 kb on + strand, within Psyr_0331at 351.046 kb on + strand, within Psyr_0331at 351.046 kb on + strand, within Psyr_0331at 351.047 kb on - strand, within Psyr_0331at 351.047 kb on - strand, within Psyr_0331at 351.068 kb on - strand, within Psyr_0331at 351.076 kb on + strand, within Psyr_0331at 351.076 kb on + strand, within Psyr_0331at 351.076 kb on + strand, within Psyr_0331at 351.076 kb on + strand, within Psyr_0331at 351.076 kb on + strand, within Psyr_0331at 351.076 kb on + strand, within Psyr_0331at 351.076 kb on + strand, within Psyr_0331at 351.077 kb on - strand, within Psyr_0331at 351.077 kb on - strand, within Psyr_0331at 351.083 kb on + strand, within Psyr_0331at 351.083 kb on + strand, within Psyr_0331at 351.083 kb on + strand, within Psyr_0331at 351.083 kb on + strand, within Psyr_0331at 351.083 kb on + strand, within Psyr_0331at 351.083 kb on + strand, within Psyr_0331at 351.084 kb on - strand, within Psyr_0331at 351.084 kb on - strand, within Psyr_0331at 351.084 kb on - strand, within Psyr_0331at 351.084 kb on - strand, within Psyr_0331at 351.084 kb on - strand, within Psyr_0331at 351.097 kb on + strand, within Psyr_0331at 351.098 kb on - strand, within Psyr_0331at 351.098 kb on - strand, within Psyr_0331at 351.098 kb on - strand, within Psyr_0331at 351.152 kb on + strand, within Psyr_0331at 351.265 kb on + strand, within Psyr_0331at 351.265 kb on + strand, within Psyr_0331at 351.265 kb on + strand, within Psyr_0331at 351.265 kb on + strand, within Psyr_0331at 351.265 kb on + strand, within Psyr_0331at 351.266 kb on - strand, within Psyr_0331at 351.267 kb on + strandat 351.267 kb on + strand, within Psyr_0331at 351.267 kb on + strand, within Psyr_0331at 351.267 kb on + strand, within Psyr_0331at 351.267 kb on + strand, within Psyr_0331at 351.268 kb on - strand, within Psyr_0331at 351.268 kb on - strand, within Psyr_0331at 351.268 kb on - strand, within Psyr_0331at 351.268 kb on - strand, within Psyr_0331at 351.268 kb on - strand, within Psyr_0331at 351.268 kb on - strand, within Psyr_0331at 351.268 kb on - strand, within Psyr_0331at 351.353 kb on - strand, within Psyr_0331at 351.382 kb on + strand, within Psyr_0331at 351.382 kb on + strand, within Psyr_0331at 351.382 kb on + strand, within Psyr_0331at 351.382 kb on + strand, within Psyr_0331at 351.383 kb on - strand, within Psyr_0331

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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348,767 + Psyr_0329 0.62 +0.5
348,767 + Psyr_0329 0.62 +2.8
348,767 + Psyr_0329 0.62 +1.7
348,768 - Psyr_0329 0.62 +0.1
348,768 - Psyr_0329 0.62 +1.5
348,815 + Psyr_0329 0.66 -2.5
348,936 + Psyr_0329 0.76 -0.6
348,937 - Psyr_0329 0.76 -0.6
348,990 + Psyr_0329 0.80 +1.0
348,991 - Psyr_0329 0.80 -0.0
348,991 - Psyr_0329 0.80 -3.0
348,992 + Psyr_0329 0.80 +0.8
348,992 + Psyr_0329 0.80 +0.2
348,993 - Psyr_0329 0.80 -1.2
348,993 - Psyr_0329 0.80 -0.6
348,993 - Psyr_0329 0.80 -1.5
348,993 - Psyr_0329 0.80 +1.9
348,993 - Psyr_0329 0.80 +2.6
348,993 - Psyr_0329 0.80 -0.5
348,993 - Psyr_0329 0.80 +0.2
348,999 + Psyr_0329 0.81 -2.7
348,999 + Psyr_0329 0.81 +0.7
349,020 + Psyr_0329 0.82 -1.5
349,086 + Psyr_0329 0.88 +1.2
349,086 + Psyr_0329 0.88 -0.9
349,086 + Psyr_0329 0.88 -0.2
349,086 + Psyr_0329 0.88 -1.5
349,086 + Psyr_0329 0.88 +1.7
349,086 + Psyr_0329 0.88 +0.1
349,087 - Psyr_0329 0.88 -1.8
349,087 - Psyr_0329 0.88 +0.7
349,100 + Psyr_0329 0.89 +0.9
349,101 - Psyr_0329 0.89 +0.8
349,101 - Psyr_0329 0.89 +1.7
349,193 - +0.3
349,235 + +0.7
349,235 + +1.7
349,235 + +0.1
349,236 - +0.5
349,236 - -2.5
349,236 - +0.4
349,243 + +0.4
349,243 + -0.0
349,243 + -0.1
349,243 + +2.2
349,243 + +0.1
349,243 + -0.1
349,243 + +0.4
349,244 - +0.1
349,244 - -2.6
349,244 - -0.5
349,273 + +1.0
349,289 - +0.5
349,291 + +0.7
349,292 - -1.4
349,292 - +3.3
349,367 - +0.2
349,371 + +0.3
349,372 - -0.0
349,372 - +0.4
349,378 - -0.8
349,399 + -0.8
349,400 - -0.5
349,487 - -1.6
349,545 - -0.9
349,594 - -2.0
349,638 + +0.4
349,638 + +0.2
349,639 - -1.3
349,673 + -0.9
349,674 - +0.1
349,714 - -0.3
349,754 + +0.1
349,901 + Psyr_0330 0.29 -0.1
349,938 + Psyr_0330 0.34 +1.1
349,938 + Psyr_0330 0.34 +0.5
349,938 + Psyr_0330 0.34 -0.6
349,938 + Psyr_0330 0.34 +1.7
349,938 + Psyr_0330 0.34 -0.7
349,939 - Psyr_0330 0.34 +4.7
349,939 - Psyr_0330 0.34 +1.0
349,939 - Psyr_0330 0.34 -1.0
349,939 - Psyr_0330 0.34 +0.4
349,993 + Psyr_0330 0.42 -0.5
350,003 + Psyr_0330 0.44 +0.6
350,004 - Psyr_0330 0.44 +0.1
350,004 - Psyr_0330 0.44 -2.1
350,004 - Psyr_0330 0.44 +1.0
350,004 - Psyr_0330 0.44 +0.2
350,024 + Psyr_0330 0.47 +0.2
350,031 + Psyr_0330 0.48 -0.7
350,124 - Psyr_0330 0.61 +0.1
350,329 - -0.5
350,337 - +2.0
350,338 + +1.9
350,338 + -1.5
350,338 + -1.8
350,338 + -1.1
350,339 - +0.4
350,339 - +2.7
350,339 - +0.1
350,339 - +0.7
350,351 - +0.7
350,354 + +0.8
350,354 + +0.4
350,354 + -1.6
350,354 + +0.4
350,354 + -0.3
350,355 - -1.9
350,355 - +1.3
350,355 - +1.6
350,355 - +0.0
350,355 - -1.2
350,355 - -2.2
350,385 - +0.3
350,452 - +2.1
350,461 - +3.0
350,461 - +0.0
350,484 + +1.2
350,532 - +2.9
350,585 + Psyr_0331 0.11 -0.6
350,585 + Psyr_0331 0.11 -0.2
350,585 + Psyr_0331 0.11 -2.1
350,585 + Psyr_0331 0.11 +0.9
350,586 - Psyr_0331 0.11 +0.4
350,586 - Psyr_0331 0.11 -0.0
350,586 - Psyr_0331 0.11 +1.4
350,586 - Psyr_0331 0.11 -0.1
350,586 - Psyr_0331 0.11 +0.5
350,626 + Psyr_0331 0.13 -1.1
350,626 + Psyr_0331 0.13 -0.3
350,626 + Psyr_0331 0.13 -0.8
350,626 + Psyr_0331 0.13 +2.9
350,626 + Psyr_0331 0.13 +0.1
350,626 + Psyr_0331 0.13 +1.3
350,627 - Psyr_0331 0.13 -1.3
350,627 - Psyr_0331 0.13 +1.1
350,627 - Psyr_0331 0.13 -0.2
350,627 - Psyr_0331 0.13 -2.1
350,627 - Psyr_0331 0.13 +0.7
350,819 + Psyr_0331 0.26 +0.2
350,819 + Psyr_0331 0.26 -0.8
350,819 + Psyr_0331 0.26 +0.3
350,819 + Psyr_0331 0.26 +0.4
350,820 - Psyr_0331 0.26 -2.7
350,820 - Psyr_0331 0.26 -0.5
350,820 - Psyr_0331 0.26 -1.8
350,820 - Psyr_0331 0.26 -0.4
350,820 - Psyr_0331 0.26 -0.1
350,820 - Psyr_0331 0.26 -1.9
350,888 + Psyr_0331 0.30 -0.2
350,888 + Psyr_0331 0.30 +1.5
350,889 - Psyr_0331 0.30 +0.1
350,921 + Psyr_0331 0.32 +0.3
350,921 + Psyr_0331 0.32 -1.3
350,921 + Psyr_0331 0.32 +0.7
350,922 - Psyr_0331 0.32 -0.1
350,922 - Psyr_0331 0.32 +0.6
350,926 + Psyr_0331 0.33 +0.8
350,926 + Psyr_0331 0.33 -0.1
350,926 + Psyr_0331 0.33 +0.1
350,926 + Psyr_0331 0.33 +0.7
350,926 + Psyr_0331 0.33 -0.8
350,927 - Psyr_0331 0.33 -0.8
350,927 - Psyr_0331 0.33 -0.6
350,927 - Psyr_0331 0.33 -0.2
350,927 - Psyr_0331 0.33 +0.1
350,928 + Psyr_0331 0.33 +0.8
350,960 + Psyr_0331 0.35 -0.3
350,960 + Psyr_0331 0.35 +1.0
350,960 + Psyr_0331 0.35 +0.3
350,961 + Psyr_0331 0.35 +0.5
351,010 + Psyr_0331 0.38 -0.4
351,011 - Psyr_0331 0.38 -0.9
351,046 + Psyr_0331 0.40 -0.3
351,046 + Psyr_0331 0.40 +0.5
351,046 + Psyr_0331 0.40 +0.0
351,047 - Psyr_0331 0.41 -0.2
351,047 - Psyr_0331 0.41 +3.1
351,068 - Psyr_0331 0.42 -0.3
351,076 + Psyr_0331 0.42 +0.9
351,076 + Psyr_0331 0.42 -2.8
351,076 + Psyr_0331 0.42 +0.3
351,076 + Psyr_0331 0.42 -0.8
351,076 + Psyr_0331 0.42 -0.2
351,076 + Psyr_0331 0.42 -2.1
351,076 + Psyr_0331 0.42 -0.5
351,077 - Psyr_0331 0.42 -0.7
351,077 - Psyr_0331 0.42 +0.1
351,083 + Psyr_0331 0.43 +0.5
351,083 + Psyr_0331 0.43 +0.6
351,083 + Psyr_0331 0.43 -0.4
351,083 + Psyr_0331 0.43 +0.1
351,083 + Psyr_0331 0.43 +1.8
351,083 + Psyr_0331 0.43 -1.1
351,084 - Psyr_0331 0.43 -0.1
351,084 - Psyr_0331 0.43 -0.9
351,084 - Psyr_0331 0.43 +0.9
351,084 - Psyr_0331 0.43 +0.1
351,084 - Psyr_0331 0.43 +0.3
351,097 + Psyr_0331 0.44 -1.1
351,098 - Psyr_0331 0.44 +1.6
351,098 - Psyr_0331 0.44 -1.1
351,098 - Psyr_0331 0.44 +0.3
351,152 + Psyr_0331 0.47 +0.3
351,265 + Psyr_0331 0.55 -1.0
351,265 + Psyr_0331 0.55 -1.6
351,265 + Psyr_0331 0.55 -0.3
351,265 + Psyr_0331 0.55 +0.6
351,265 + Psyr_0331 0.55 +1.6
351,266 - Psyr_0331 0.55 +0.3
351,267 + +1.3
351,267 + Psyr_0331 0.55 -0.6
351,267 + Psyr_0331 0.55 +0.5
351,267 + Psyr_0331 0.55 -0.2
351,267 + Psyr_0331 0.55 +0.6
351,268 - Psyr_0331 0.55 +2.7
351,268 - Psyr_0331 0.55 -1.8
351,268 - Psyr_0331 0.55 +0.7
351,268 - Psyr_0331 0.55 -0.1
351,268 - Psyr_0331 0.55 -0.1
351,268 - Psyr_0331 0.55 +0.6
351,268 - Psyr_0331 0.55 +0.2
351,353 - Psyr_0331 0.60 +0.3
351,382 + Psyr_0331 0.62 +1.6
351,382 + Psyr_0331 0.62 -0.8
351,382 + Psyr_0331 0.62 +0.1
351,382 + Psyr_0331 0.62 +0.6
351,383 - Psyr_0331 0.62 +0.0

Or see this region's nucleotide sequence