Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0295 and Psyr_0296 overlap by 14 nucleotides Psyr_0296 and Psyr_0297 overlap by 1 nucleotides Psyr_0297 and Psyr_0298 are separated by 31 nucleotides
Psyr_0295: Psyr_0295 - amino acid ABC transporter ATP-binding protein, PAAT family, at 315,811 to 316,545
_0295
Psyr_0296: Psyr_0296 - amino acid ABC transporter membrane protein 2, PAAT family, at 316,532 to 317,179
_0296
Psyr_0297: Psyr_0297 - amino acid ABC transporter membrane protein 1, PAAT family, at 317,179 to 317,844
_0297
Psyr_0298: Psyr_0298 - amino acid ABC transporter substrate-binding protein, PAAT family, at 317,876 to 318,661
_0298
Position (kb) 316
317
318 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 315.557 kb on + strand at 315.558 kb on - strand at 315.558 kb on - strand at 315.558 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.649 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.758 kb on + strand at 315.759 kb on - strand at 316.069 kb on + strand, within Psyr_0295 at 316.069 kb on + strand, within Psyr_0295 at 316.069 kb on + strand, within Psyr_0295 at 316.070 kb on - strand, within Psyr_0295 at 316.349 kb on + strand, within Psyr_0295 at 316.349 kb on + strand, within Psyr_0295 at 316.474 kb on + strand at 316.474 kb on + strand at 316.508 kb on + strand at 316.508 kb on + strand at 316.509 kb on - strand at 316.509 kb on - strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.511 kb on + strand at 316.512 kb on - strand at 316.512 kb on - strand at 316.512 kb on - strand at 316.512 kb on - strand at 316.512 kb on - strand at 316.512 kb on - strand at 316.512 kb on - strand at 316.515 kb on + strand at 316.515 kb on + strand at 316.515 kb on + strand at 316.515 kb on + strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.516 kb on - strand at 316.587 kb on + strand at 316.588 kb on - strand at 316.602 kb on + strand, within Psyr_0296 at 316.602 kb on + strand, within Psyr_0296 at 316.623 kb on + strand, within Psyr_0296 at 316.624 kb on - strand, within Psyr_0296 at 316.624 kb on - strand, within Psyr_0296 at 316.785 kb on + strand, within Psyr_0296 at 316.786 kb on - strand, within Psyr_0296 at 316.885 kb on - strand, within Psyr_0296 at 316.885 kb on - strand, within Psyr_0296 at 316.885 kb on - strand, within Psyr_0296 at 316.895 kb on - strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.012 kb on + strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.013 kb on - strand, within Psyr_0296 at 317.014 kb on + strand, within Psyr_0296 at 317.015 kb on - strand, within Psyr_0296 at 317.015 kb on - strand, within Psyr_0296 at 317.015 kb on - strand, within Psyr_0296 at 317.015 kb on - strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.016 kb on + strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.017 kb on - strand, within Psyr_0296 at 317.198 kb on + strand at 317.198 kb on + strand at 317.198 kb on + strand at 317.198 kb on + strand at 317.199 kb on - strand at 317.199 kb on - strand at 317.199 kb on - strand at 317.199 kb on - strand at 317.252 kb on + strand, within Psyr_0297 at 317.253 kb on - strand, within Psyr_0297 at 317.253 kb on - strand, within Psyr_0297 at 317.253 kb on - strand, within Psyr_0297 at 317.273 kb on + strand, within Psyr_0297 at 317.273 kb on + strand, within Psyr_0297 at 317.273 kb on + strand, within Psyr_0297 at 317.273 kb on + strand, within Psyr_0297 at 317.273 kb on + strand, within Psyr_0297 at 317.273 kb on + strand, within Psyr_0297 at 317.274 kb on - strand, within Psyr_0297 at 317.274 kb on - strand, within Psyr_0297 at 317.274 kb on - strand, within Psyr_0297 at 317.274 kb on - strand, within Psyr_0297 at 317.274 kb on - strand, within Psyr_0297 at 317.535 kb on - strand, within Psyr_0297 at 317.646 kb on + strand, within Psyr_0297 at 317.646 kb on + strand, within Psyr_0297 at 317.646 kb on + strand, within Psyr_0297 at 317.646 kb on + strand, within Psyr_0297 at 317.647 kb on - strand, within Psyr_0297 at 317.647 kb on - strand, within Psyr_0297 at 317.647 kb on - strand, within Psyr_0297 at 317.647 kb on - strand, within Psyr_0297 at 317.666 kb on + strand, within Psyr_0297 at 317.666 kb on + strand, within Psyr_0297 at 317.666 kb on + strand, within Psyr_0297 at 317.666 kb on + strand, within Psyr_0297 at 317.666 kb on + strand, within Psyr_0297 at 317.666 kb on + strand, within Psyr_0297 at 317.666 kb on + strand, within Psyr_0297 at 317.666 kb on + strand, within Psyr_0297 at 317.666 kb on + strand, within Psyr_0297 at 317.666 kb on + strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.667 kb on - strand, within Psyr_0297 at 317.755 kb on + strand, within Psyr_0297 at 317.755 kb on + strand, within Psyr_0297 at 317.755 kb on + strand, within Psyr_0297 at 317.756 kb on - strand, within Psyr_0297 at 317.757 kb on + strand, within Psyr_0297 at 317.933 kb on - strand at 318.009 kb on + strand, within Psyr_0298 at 318.009 kb on + strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.010 kb on - strand, within Psyr_0298 at 318.126 kb on + strand, within Psyr_0298
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 315,557 + +1.0 315,558 - -0.3 315,558 - +0.6 315,558 - -1.6 315,592 - +1.0 315,592 - +0.7 315,592 - -0.3 315,592 - -0.8 315,592 - +1.7 315,649 + -0.2 315,756 + -0.2 315,756 + -1.5 315,756 + -1.7 315,756 + -2.7 315,756 + -0.3 315,757 - -0.1 315,757 - +1.7 315,757 - -0.7 315,757 - +1.0 315,757 - +0.7 315,757 - -0.4 315,757 - -0.3 315,757 - +1.0 315,757 - +0.5 315,757 - -0.7 315,758 + +0.8 315,759 - +0.9 316,069 + Psyr_0295 0.35 -0.8 316,069 + Psyr_0295 0.35 +0.1 316,069 + Psyr_0295 0.35 +0.3 316,070 - Psyr_0295 0.35 -0.5 316,349 + Psyr_0295 0.73 +2.1 316,349 + Psyr_0295 0.73 +3.0 316,474 + -2.6 316,474 + -0.9 316,508 + +0.7 316,508 + -1.3 316,509 - -0.6 316,509 - +0.3 316,511 + +0.1 316,511 + -2.0 316,511 + +0.9 316,511 + +0.5 316,511 + -1.7 316,511 + -0.5 316,511 + -1.8 316,511 + -0.8 316,511 + +2.5 316,511 + -0.4 316,511 + +0.7 316,512 - +1.2 316,512 - -0.4 316,512 - -0.6 316,512 - -0.9 316,512 - -0.3 316,512 - +0.1 316,512 - +0.5 316,515 + -0.1 316,515 + +0.8 316,515 + +1.7 316,515 + +1.7 316,516 - -0.8 316,516 - -0.6 316,516 - +0.2 316,516 - +1.9 316,516 - +0.7 316,516 - +0.1 316,516 - +0.0 316,516 - -1.9 316,516 - -0.1 316,516 - -1.1 316,516 - +4.8 316,587 + -0.1 316,588 - -2.1 316,602 + Psyr_0296 0.11 +0.4 316,602 + Psyr_0296 0.11 +0.5 316,623 + Psyr_0296 0.14 +0.9 316,624 - Psyr_0296 0.14 -0.9 316,624 - Psyr_0296 0.14 -0.0 316,785 + Psyr_0296 0.39 +1.6 316,786 - Psyr_0296 0.39 +2.6 316,885 - Psyr_0296 0.54 +1.4 316,885 - Psyr_0296 0.54 +0.9 316,885 - Psyr_0296 0.54 -1.3 316,895 - Psyr_0296 0.56 -0.5 317,012 + Psyr_0296 0.74 -0.8 317,012 + Psyr_0296 0.74 -0.4 317,012 + Psyr_0296 0.74 -0.7 317,012 + Psyr_0296 0.74 +1.3 317,012 + Psyr_0296 0.74 +0.1 317,012 + Psyr_0296 0.74 +0.5 317,012 + Psyr_0296 0.74 -0.9 317,012 + Psyr_0296 0.74 +0.1 317,012 + Psyr_0296 0.74 +0.2 317,012 + Psyr_0296 0.74 -2.4 317,012 + Psyr_0296 0.74 +1.7 317,012 + Psyr_0296 0.74 +0.0 317,012 + Psyr_0296 0.74 +0.5 317,012 + Psyr_0296 0.74 +0.6 317,012 + Psyr_0296 0.74 +0.9 317,012 + Psyr_0296 0.74 -0.9 317,012 + Psyr_0296 0.74 +3.3 317,012 + Psyr_0296 0.74 -0.4 317,013 - Psyr_0296 0.74 -0.6 317,013 - Psyr_0296 0.74 -0.2 317,013 - Psyr_0296 0.74 +1.0 317,013 - Psyr_0296 0.74 -3.2 317,013 - Psyr_0296 0.74 +1.6 317,013 - Psyr_0296 0.74 +0.3 317,013 - Psyr_0296 0.74 -0.1 317,013 - Psyr_0296 0.74 -0.3 317,013 - Psyr_0296 0.74 +1.7 317,013 - Psyr_0296 0.74 +2.1 317,013 - Psyr_0296 0.74 -0.4 317,013 - Psyr_0296 0.74 -0.7 317,013 - Psyr_0296 0.74 -0.0 317,013 - Psyr_0296 0.74 -0.5 317,014 + Psyr_0296 0.74 -0.1 317,015 - Psyr_0296 0.75 +0.3 317,015 - Psyr_0296 0.75 +0.8 317,015 - Psyr_0296 0.75 -0.4 317,015 - Psyr_0296 0.75 +2.7 317,016 + Psyr_0296 0.75 +2.0 317,016 + Psyr_0296 0.75 -0.4 317,016 + Psyr_0296 0.75 +0.1 317,016 + Psyr_0296 0.75 -0.5 317,016 + Psyr_0296 0.75 -0.4 317,016 + Psyr_0296 0.75 -1.1 317,016 + Psyr_0296 0.75 +0.1 317,017 - Psyr_0296 0.75 -0.3 317,017 - Psyr_0296 0.75 -1.5 317,017 - Psyr_0296 0.75 +1.0 317,017 - Psyr_0296 0.75 -1.6 317,017 - Psyr_0296 0.75 +1.0 317,017 - Psyr_0296 0.75 -0.6 317,017 - Psyr_0296 0.75 +0.3 317,017 - Psyr_0296 0.75 +0.1 317,017 - Psyr_0296 0.75 +1.8 317,017 - Psyr_0296 0.75 +1.2 317,017 - Psyr_0296 0.75 -0.9 317,017 - Psyr_0296 0.75 -0.8 317,017 - Psyr_0296 0.75 +1.5 317,017 - Psyr_0296 0.75 +0.8 317,017 - Psyr_0296 0.75 +1.0 317,198 + -1.1 317,198 + +0.5 317,198 + +0.4 317,198 + +0.3 317,199 - -0.7 317,199 - -0.6 317,199 - -0.6 317,199 - -0.6 317,252 + Psyr_0297 0.11 -0.9 317,253 - Psyr_0297 0.11 +0.2 317,253 - Psyr_0297 0.11 +0.2 317,253 - Psyr_0297 0.11 -2.7 317,273 + Psyr_0297 0.14 -1.0 317,273 + Psyr_0297 0.14 -0.7 317,273 + Psyr_0297 0.14 +0.4 317,273 + Psyr_0297 0.14 -1.7 317,273 + Psyr_0297 0.14 -0.4 317,273 + Psyr_0297 0.14 +0.1 317,274 - Psyr_0297 0.14 -0.3 317,274 - Psyr_0297 0.14 +0.3 317,274 - Psyr_0297 0.14 +0.4 317,274 - Psyr_0297 0.14 -1.8 317,274 - Psyr_0297 0.14 -0.3 317,535 - Psyr_0297 0.53 +0.3 317,646 + Psyr_0297 0.70 +0.1 317,646 + Psyr_0297 0.70 +0.1 317,646 + Psyr_0297 0.70 -0.1 317,646 + Psyr_0297 0.70 +1.9 317,647 - Psyr_0297 0.70 -1.6 317,647 - Psyr_0297 0.70 -4.0 317,647 - Psyr_0297 0.70 -1.8 317,647 - Psyr_0297 0.70 -0.9 317,666 + Psyr_0297 0.73 +1.0 317,666 + Psyr_0297 0.73 +3.5 317,666 + Psyr_0297 0.73 +0.3 317,666 + Psyr_0297 0.73 +0.5 317,666 + Psyr_0297 0.73 -0.1 317,666 + Psyr_0297 0.73 -0.7 317,666 + Psyr_0297 0.73 +0.3 317,666 + Psyr_0297 0.73 -0.8 317,666 + Psyr_0297 0.73 -0.3 317,666 + Psyr_0297 0.73 -0.3 317,667 - Psyr_0297 0.73 +0.5 317,667 - Psyr_0297 0.73 -0.0 317,667 - Psyr_0297 0.73 +0.1 317,667 - Psyr_0297 0.73 -0.4 317,667 - Psyr_0297 0.73 -0.7 317,667 - Psyr_0297 0.73 -3.0 317,667 - Psyr_0297 0.73 +0.1 317,667 - Psyr_0297 0.73 -0.9 317,667 - Psyr_0297 0.73 -0.4 317,667 - Psyr_0297 0.73 +1.9 317,667 - Psyr_0297 0.73 +3.9 317,667 - Psyr_0297 0.73 -2.0 317,667 - Psyr_0297 0.73 -1.1 317,667 - Psyr_0297 0.73 -1.1 317,667 - Psyr_0297 0.73 +0.1 317,667 - Psyr_0297 0.73 -0.9 317,667 - Psyr_0297 0.73 -0.4 317,755 + Psyr_0297 0.86 -0.0 317,755 + Psyr_0297 0.86 -2.6 317,755 + Psyr_0297 0.86 +0.6 317,756 - Psyr_0297 0.87 -0.4 317,757 + Psyr_0297 0.87 -0.0 317,933 - -0.6 318,009 + Psyr_0298 0.17 +0.2 318,009 + Psyr_0298 0.17 +1.6 318,010 - Psyr_0298 0.17 -0.6 318,010 - Psyr_0298 0.17 -2.2 318,010 - Psyr_0298 0.17 +1.2 318,010 - Psyr_0298 0.17 -1.3 318,010 - Psyr_0298 0.17 -0.1 318,010 - Psyr_0298 0.17 +0.5 318,010 - Psyr_0298 0.17 +0.1 318,126 + Psyr_0298 0.32 +0.1
Or see this region's nucleotide sequence