Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0293 and Psyr_0294 overlap by 14 nucleotides Psyr_0294 and Psyr_0295 are separated by 593 nucleotides
Psyr_0293: Psyr_0293 - Polyphosphate kinase, at 311,440 to 313,650
_0293
Psyr_0294: Psyr_0294 - Exopolyphosphatase, at 313,637 to 315,217
_0294
Psyr_0295: Psyr_0295 - amino acid ABC transporter ATP-binding protein, PAAT family, at 315,811 to 316,545
_0295
Position (kb) 313
314
315
316 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 312.697 kb on + strand, within Psyr_0293 at 312.856 kb on + strand, within Psyr_0293 at 312.856 kb on + strand, within Psyr_0293 at 312.926 kb on + strand, within Psyr_0293 at 312.926 kb on + strand, within Psyr_0293 at 312.926 kb on + strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.955 kb on + strand, within Psyr_0293 at 312.955 kb on + strand, within Psyr_0293 at 312.956 kb on - strand, within Psyr_0293 at 312.956 kb on - strand, within Psyr_0293 at 312.956 kb on - strand, within Psyr_0293 at 312.979 kb on + strand, within Psyr_0293 at 312.979 kb on + strand, within Psyr_0293 at 312.979 kb on + strand, within Psyr_0293 at 312.979 kb on + strand, within Psyr_0293 at 312.979 kb on + strand, within Psyr_0293 at 312.980 kb on - strand, within Psyr_0293 at 312.980 kb on - strand, within Psyr_0293 at 312.980 kb on - strand, within Psyr_0293 at 312.980 kb on - strand, within Psyr_0293 at 312.980 kb on - strand, within Psyr_0293 at 312.989 kb on - strand, within Psyr_0293 at 313.225 kb on + strand, within Psyr_0293 at 313.225 kb on + strand, within Psyr_0293 at 313.225 kb on + strand, within Psyr_0293 at 313.225 kb on + strand, within Psyr_0293 at 313.225 kb on + strand, within Psyr_0293 at 313.226 kb on - strand, within Psyr_0293 at 313.226 kb on - strand, within Psyr_0293 at 313.226 kb on - strand, within Psyr_0293 at 313.226 kb on - strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.367 kb on - strand, within Psyr_0293 at 313.367 kb on - strand, within Psyr_0293 at 313.367 kb on - strand, within Psyr_0293 at 313.367 kb on - strand, within Psyr_0293 at 313.507 kb on + strand at 313.508 kb on - strand at 313.508 kb on - strand at 313.643 kb on + strand at 313.643 kb on + strand at 313.900 kb on + strand, within Psyr_0294 at 313.984 kb on - strand, within Psyr_0294 at 314.008 kb on - strand, within Psyr_0294 at 314.067 kb on + strand, within Psyr_0294 at 314.164 kb on - strand, within Psyr_0294 at 314.198 kb on + strand, within Psyr_0294 at 314.198 kb on + strand, within Psyr_0294 at 314.198 kb on + strand, within Psyr_0294 at 314.198 kb on + strand, within Psyr_0294 at 314.199 kb on - strand, within Psyr_0294 at 314.199 kb on - strand, within Psyr_0294 at 314.199 kb on - strand, within Psyr_0294 at 314.199 kb on - strand, within Psyr_0294 at 314.233 kb on - strand, within Psyr_0294 at 314.568 kb on + strand, within Psyr_0294 at 314.569 kb on - strand, within Psyr_0294 at 314.569 kb on - strand, within Psyr_0294 at 314.580 kb on + strand, within Psyr_0294 at 314.614 kb on - strand, within Psyr_0294 at 314.766 kb on + strand, within Psyr_0294 at 314.767 kb on - strand, within Psyr_0294 at 314.767 kb on - strand, within Psyr_0294 at 314.767 kb on - strand, within Psyr_0294 at 315.070 kb on + strand at 315.070 kb on + strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.232 kb on - strand at 315.235 kb on - strand at 315.235 kb on - strand at 315.251 kb on + strand at 315.325 kb on + strand at 315.325 kb on + strand at 315.349 kb on + strand at 315.367 kb on + strand at 315.367 kb on + strand at 315.367 kb on + strand at 315.367 kb on + strand at 315.367 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.428 kb on + strand at 315.428 kb on + strand at 315.428 kb on + strand at 315.429 kb on - strand at 315.429 kb on - strand at 315.429 kb on - strand at 315.429 kb on - strand at 315.429 kb on - strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.557 kb on + strand at 315.558 kb on - strand at 315.558 kb on - strand at 315.558 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.649 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.758 kb on + strand at 315.759 kb on - strand at 316.069 kb on + strand, within Psyr_0295 at 316.069 kb on + strand, within Psyr_0295 at 316.069 kb on + strand, within Psyr_0295 at 316.070 kb on - strand, within Psyr_0295
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 312,697 + Psyr_0293 0.57 -1.7 312,856 + Psyr_0293 0.64 -0.9 312,856 + Psyr_0293 0.64 -0.5 312,926 + Psyr_0293 0.67 -1.2 312,926 + Psyr_0293 0.67 -1.9 312,926 + Psyr_0293 0.67 +1.0 312,927 - Psyr_0293 0.67 -0.9 312,927 - Psyr_0293 0.67 -0.5 312,927 - Psyr_0293 0.67 +2.4 312,927 - Psyr_0293 0.67 -0.9 312,927 - Psyr_0293 0.67 -0.8 312,927 - Psyr_0293 0.67 -0.2 312,927 - Psyr_0293 0.67 +0.7 312,927 - Psyr_0293 0.67 +0.5 312,927 - Psyr_0293 0.67 +0.5 312,955 + Psyr_0293 0.69 -0.6 312,955 + Psyr_0293 0.69 +0.5 312,956 - Psyr_0293 0.69 +0.3 312,956 - Psyr_0293 0.69 +0.2 312,956 - Psyr_0293 0.69 +0.2 312,979 + Psyr_0293 0.70 +2.1 312,979 + Psyr_0293 0.70 +0.4 312,979 + Psyr_0293 0.70 +1.3 312,979 + Psyr_0293 0.70 -0.1 312,979 + Psyr_0293 0.70 -2.1 312,980 - Psyr_0293 0.70 +5.5 312,980 - Psyr_0293 0.70 -1.0 312,980 - Psyr_0293 0.70 -1.2 312,980 - Psyr_0293 0.70 -1.8 312,980 - Psyr_0293 0.70 +0.1 312,989 - Psyr_0293 0.70 -0.3 313,225 + Psyr_0293 0.81 -1.2 313,225 + Psyr_0293 0.81 -0.2 313,225 + Psyr_0293 0.81 -0.2 313,225 + Psyr_0293 0.81 -2.0 313,225 + Psyr_0293 0.81 -1.3 313,226 - Psyr_0293 0.81 -1.6 313,226 - Psyr_0293 0.81 +0.5 313,226 - Psyr_0293 0.81 -0.9 313,226 - Psyr_0293 0.81 +1.9 313,366 + Psyr_0293 0.87 +1.2 313,366 + Psyr_0293 0.87 -0.3 313,366 + Psyr_0293 0.87 +0.4 313,366 + Psyr_0293 0.87 -0.2 313,366 + Psyr_0293 0.87 +0.7 313,366 + Psyr_0293 0.87 -1.0 313,366 + Psyr_0293 0.87 -0.5 313,366 + Psyr_0293 0.87 +0.1 313,367 - Psyr_0293 0.87 -0.8 313,367 - Psyr_0293 0.87 +1.7 313,367 - Psyr_0293 0.87 -3.0 313,367 - Psyr_0293 0.87 -1.4 313,507 + -0.3 313,508 - -2.3 313,508 - +0.0 313,643 + +0.1 313,643 + +1.1 313,900 + Psyr_0294 0.17 -0.3 313,984 - Psyr_0294 0.22 -2.7 314,008 - Psyr_0294 0.23 +0.3 314,067 + Psyr_0294 0.27 -1.7 314,164 - Psyr_0294 0.33 +0.5 314,198 + Psyr_0294 0.35 -0.1 314,198 + Psyr_0294 0.35 +0.1 314,198 + Psyr_0294 0.35 -0.6 314,198 + Psyr_0294 0.35 +0.1 314,199 - Psyr_0294 0.36 -0.4 314,199 - Psyr_0294 0.36 -0.5 314,199 - Psyr_0294 0.36 +1.7 314,199 - Psyr_0294 0.36 -2.5 314,233 - Psyr_0294 0.38 -1.7 314,568 + Psyr_0294 0.59 -1.3 314,569 - Psyr_0294 0.59 -1.0 314,569 - Psyr_0294 0.59 -2.4 314,580 + Psyr_0294 0.60 -0.2 314,614 - Psyr_0294 0.62 -2.3 314,766 + Psyr_0294 0.71 -1.1 314,767 - Psyr_0294 0.71 +0.4 314,767 - Psyr_0294 0.71 +0.1 314,767 - Psyr_0294 0.71 +1.4 315,070 + -3.9 315,070 + +0.5 315,071 - +0.7 315,071 - -2.3 315,071 - -0.7 315,071 - -0.6 315,071 - -1.7 315,071 - -0.3 315,232 - +1.5 315,235 - -1.5 315,235 - +0.9 315,251 + -0.7 315,325 + -0.3 315,325 + +1.2 315,349 + +1.3 315,367 + -0.1 315,367 + +0.6 315,367 + -0.6 315,367 + +0.1 315,367 + +0.3 315,370 + -0.2 315,370 + +0.7 315,370 + -0.5 315,370 + -1.6 315,370 + -0.7 315,370 + -0.7 315,370 + +0.4 315,370 + +1.5 315,370 + -0.0 315,370 + +0.6 315,371 - -0.5 315,371 - +1.2 315,371 - +1.8 315,371 - -1.1 315,371 - +2.7 315,371 - -1.4 315,371 - +0.8 315,371 - -1.3 315,428 + +0.1 315,428 + +0.0 315,428 + +1.0 315,429 - +0.5 315,429 - -0.2 315,429 - +1.1 315,429 - -0.1 315,429 - +0.1 315,502 + -0.1 315,502 + +0.4 315,502 + -0.2 315,502 + +0.3 315,502 + -0.7 315,502 + -1.6 315,502 + +1.1 315,502 + -2.5 315,502 + +2.1 315,502 + +1.7 315,502 + +0.1 315,502 + -0.7 315,502 + -0.1 315,503 - +0.3 315,503 - -1.5 315,503 - +3.0 315,503 - -0.6 315,503 - +0.7 315,503 - -2.0 315,503 - +1.0 315,503 - -2.2 315,503 - +0.8 315,503 - -0.5 315,503 - -0.3 315,503 - +0.1 315,503 - -1.0 315,503 - -1.5 315,503 - +1.3 315,503 - +0.5 315,503 - -0.1 315,503 - -1.3 315,557 + +1.0 315,558 - -0.3 315,558 - +0.6 315,558 - -1.6 315,592 - +1.0 315,592 - +0.7 315,592 - -0.3 315,592 - -0.8 315,592 - +1.7 315,649 + -0.2 315,756 + -0.2 315,756 + -1.5 315,756 + -1.7 315,756 + -2.7 315,756 + -0.3 315,757 - -0.1 315,757 - +1.7 315,757 - -0.7 315,757 - +1.0 315,757 - +0.7 315,757 - -0.4 315,757 - -0.3 315,757 - +1.0 315,757 - +0.5 315,757 - -0.7 315,758 + +0.8 315,759 - +0.9 316,069 + Psyr_0295 0.35 -0.8 316,069 + Psyr_0295 0.35 +0.1 316,069 + Psyr_0295 0.35 +0.3 316,070 - Psyr_0295 0.35 -0.5
Or see this region's nucleotide sequence