Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0289

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0288 and Psyr_0289 are separated by 207 nucleotidesPsyr_0289 and Psyr_0290 are separated by 122 nucleotidesPsyr_0290 and Psyr_0291 are separated by 186 nucleotides Psyr_0288: Psyr_0288 - Carbonate dehydratase, at 306,535 to 307,275 _0288 Psyr_0289: Psyr_0289 - Radical SAM, at 307,483 to 308,541 _0289 Psyr_0290: Psyr_0290 - ThiJ/PfpI, at 308,664 to 309,332 _0290 Psyr_0291: Psyr_0291 - DedA, at 309,519 to 310,181 _0291 Position (kb) 307 308 309Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 306.623 kb on + strand, within Psyr_0288at 306.624 kb on - strand, within Psyr_0288at 306.624 kb on - strand, within Psyr_0288at 306.624 kb on - strand, within Psyr_0288at 306.653 kb on + strand, within Psyr_0288at 306.653 kb on + strand, within Psyr_0288at 306.653 kb on + strand, within Psyr_0288at 306.844 kb on + strand, within Psyr_0288at 306.845 kb on - strand, within Psyr_0288at 306.850 kb on - strand, within Psyr_0288at 306.850 kb on - strand, within Psyr_0288at 306.953 kb on + strand, within Psyr_0288at 306.953 kb on + strand, within Psyr_0288at 307.017 kb on + strand, within Psyr_0288at 307.164 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.175 kb on - strand, within Psyr_0288at 307.175 kb on - strand, within Psyr_0288at 307.175 kb on - strand, within Psyr_0288at 307.191 kb on + strand, within Psyr_0288at 307.191 kb on + strand, within Psyr_0288at 307.192 kb on - strand, within Psyr_0288at 307.205 kb on - strandat 307.410 kb on + strandat 307.411 kb on - strandat 307.424 kb on + strandat 307.425 kb on - strandat 307.583 kb on + strandat 307.584 kb on - strandat 307.649 kb on + strand, within Psyr_0289at 307.650 kb on - strand, within Psyr_0289at 307.772 kb on + strand, within Psyr_0289at 307.772 kb on + strand, within Psyr_0289at 307.773 kb on - strand, within Psyr_0289at 307.773 kb on - strand, within Psyr_0289at 307.773 kb on - strand, within Psyr_0289at 307.947 kb on + strand, within Psyr_0289at 307.947 kb on + strand, within Psyr_0289at 308.058 kb on + strand, within Psyr_0289at 308.089 kb on + strand, within Psyr_0289at 308.089 kb on + strand, within Psyr_0289at 308.089 kb on + strand, within Psyr_0289at 308.090 kb on - strand, within Psyr_0289at 308.279 kb on + strand, within Psyr_0289at 308.280 kb on - strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.508 kb on + strandat 308.508 kb on + strandat 308.508 kb on + strandat 308.509 kb on - strandat 308.549 kb on + strandat 308.549 kb on + strandat 308.550 kb on - strandat 308.557 kb on + strandat 308.570 kb on + strandat 308.575 kb on + strandat 308.582 kb on + strandat 308.582 kb on + strandat 308.583 kb on - strandat 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.896 kb on + strand, within Psyr_0290at 308.896 kb on + strand, within Psyr_0290at 308.896 kb on + strand, within Psyr_0290at 308.897 kb on - strand, within Psyr_0290at 309.290 kb on - strandat 309.312 kb on + strandat 309.312 kb on + strandat 309.313 kb on - strandat 309.374 kb on + strandat 309.375 kb on - strandat 309.521 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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306,623 + Psyr_0288 0.12 -0.9
306,624 - Psyr_0288 0.12 +0.4
306,624 - Psyr_0288 0.12 -2.0
306,624 - Psyr_0288 0.12 -0.2
306,653 + Psyr_0288 0.16 -1.6
306,653 + Psyr_0288 0.16 +0.3
306,653 + Psyr_0288 0.16 -0.5
306,844 + Psyr_0288 0.42 +0.7
306,845 - Psyr_0288 0.42 +0.5
306,850 - Psyr_0288 0.43 +0.2
306,850 - Psyr_0288 0.43 -0.4
306,953 + Psyr_0288 0.56 +1.0
306,953 + Psyr_0288 0.56 -1.5
307,017 + Psyr_0288 0.65 -0.7
307,164 + Psyr_0288 0.85 -1.0
307,174 + Psyr_0288 0.86 +2.0
307,174 + Psyr_0288 0.86 +0.1
307,174 + Psyr_0288 0.86 -0.2
307,174 + Psyr_0288 0.86 +0.1
307,174 + Psyr_0288 0.86 -0.9
307,175 - Psyr_0288 0.86 +0.5
307,175 - Psyr_0288 0.86 +0.6
307,175 - Psyr_0288 0.86 -1.2
307,191 + Psyr_0288 0.89 +0.1
307,191 + Psyr_0288 0.89 -0.5
307,192 - Psyr_0288 0.89 +1.1
307,205 - +0.4
307,410 + +0.1
307,411 - +1.5
307,424 + -0.2
307,425 - +0.7
307,583 + -0.7
307,584 - +0.7
307,649 + Psyr_0289 0.16 -2.0
307,650 - Psyr_0289 0.16 +0.2
307,772 + Psyr_0289 0.27 +4.3
307,772 + Psyr_0289 0.27 +0.1
307,773 - Psyr_0289 0.27 +0.8
307,773 - Psyr_0289 0.27 -1.6
307,773 - Psyr_0289 0.27 -0.0
307,947 + Psyr_0289 0.44 +1.0
307,947 + Psyr_0289 0.44 -0.3
308,058 + Psyr_0289 0.54 -1.4
308,089 + Psyr_0289 0.57 +1.2
308,089 + Psyr_0289 0.57 -2.9
308,089 + Psyr_0289 0.57 +0.8
308,090 - Psyr_0289 0.57 +0.6
308,279 + Psyr_0289 0.75 -1.6
308,280 - Psyr_0289 0.75 +1.0
308,306 + Psyr_0289 0.78 +0.0
308,306 + Psyr_0289 0.78 +0.7
308,306 + Psyr_0289 0.78 -1.4
308,306 + Psyr_0289 0.78 -1.6
308,306 + Psyr_0289 0.78 +0.1
308,306 + Psyr_0289 0.78 +1.4
308,306 + Psyr_0289 0.78 +0.5
308,307 - Psyr_0289 0.78 +0.8
308,307 - Psyr_0289 0.78 -2.3
308,307 - Psyr_0289 0.78 -1.5
308,307 - Psyr_0289 0.78 +2.6
308,307 - Psyr_0289 0.78 -0.3
308,307 - Psyr_0289 0.78 -0.7
308,307 - Psyr_0289 0.78 -1.1
308,508 + -0.9
308,508 + -0.3
308,508 + +0.4
308,509 - -0.2
308,549 + +0.8
308,549 + +2.1
308,550 - -2.7
308,557 + +0.5
308,570 + -0.7
308,575 + +1.4
308,582 + -2.2
308,582 + -0.2
308,583 - -0.3
308,755 + Psyr_0290 0.14 +1.1
308,755 + Psyr_0290 0.14 +2.1
308,755 + Psyr_0290 0.14 -0.5
308,755 + Psyr_0290 0.14 +0.1
308,755 + Psyr_0290 0.14 +1.2
308,755 + Psyr_0290 0.14 +0.5
308,755 + Psyr_0290 0.14 -1.5
308,755 + Psyr_0290 0.14 +1.6
308,756 - Psyr_0290 0.14 -1.3
308,756 - Psyr_0290 0.14 -1.2
308,756 - Psyr_0290 0.14 -2.5
308,756 - Psyr_0290 0.14 -0.5
308,756 - Psyr_0290 0.14 -1.0
308,756 - Psyr_0290 0.14 -0.7
308,756 - Psyr_0290 0.14 -2.1
308,756 - Psyr_0290 0.14 -1.7
308,896 + Psyr_0290 0.35 +0.2
308,896 + Psyr_0290 0.35 -0.3
308,896 + Psyr_0290 0.35 -0.2
308,897 - Psyr_0290 0.35 -1.5
309,290 - -1.7
309,312 + -0.6
309,312 + -0.3
309,313 - -0.1
309,374 + +1.7
309,375 - -0.8
309,521 - -1.6

Or see this region's nucleotide sequence