Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0287 and Psyr_0288 are separated by 104 nucleotides Psyr_0288 and Psyr_0289 are separated by 207 nucleotides
Psyr_0287: Psyr_0287 - Sulphate transporter, at 304,898 to 306,430
_0287
Psyr_0288: Psyr_0288 - Carbonate dehydratase, at 306,535 to 307,275
_0288
Psyr_0289: Psyr_0289 - Radical SAM, at 307,483 to 308,541
_0289
Position (kb) 306
307
308 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 305.568 kb on + strand, within Psyr_0287 at 305.570 kb on - strand, within Psyr_0287 at 305.570 kb on - strand, within Psyr_0287 at 305.570 kb on - strand, within Psyr_0287 at 305.570 kb on - strand, within Psyr_0287 at 305.682 kb on - strand, within Psyr_0287 at 306.044 kb on + strand, within Psyr_0287 at 306.078 kb on + strand, within Psyr_0287 at 306.166 kb on + strand, within Psyr_0287 at 306.166 kb on + strand, within Psyr_0287 at 306.197 kb on + strand, within Psyr_0287 at 306.215 kb on + strand, within Psyr_0287 at 306.216 kb on - strand, within Psyr_0287 at 306.421 kb on + strand at 306.421 kb on + strand at 306.421 kb on + strand at 306.422 kb on - strand at 306.422 kb on - strand at 306.422 kb on - strand at 306.422 kb on - strand at 306.422 kb on - strand at 306.424 kb on + strand at 306.425 kb on - strand at 306.623 kb on + strand, within Psyr_0288 at 306.624 kb on - strand, within Psyr_0288 at 306.624 kb on - strand, within Psyr_0288 at 306.624 kb on - strand, within Psyr_0288 at 306.653 kb on + strand, within Psyr_0288 at 306.653 kb on + strand, within Psyr_0288 at 306.653 kb on + strand, within Psyr_0288 at 306.844 kb on + strand, within Psyr_0288 at 306.845 kb on - strand, within Psyr_0288 at 306.850 kb on - strand, within Psyr_0288 at 306.850 kb on - strand, within Psyr_0288 at 306.953 kb on + strand, within Psyr_0288 at 306.953 kb on + strand, within Psyr_0288 at 307.017 kb on + strand, within Psyr_0288 at 307.164 kb on + strand, within Psyr_0288 at 307.174 kb on + strand, within Psyr_0288 at 307.174 kb on + strand, within Psyr_0288 at 307.174 kb on + strand, within Psyr_0288 at 307.174 kb on + strand, within Psyr_0288 at 307.174 kb on + strand, within Psyr_0288 at 307.175 kb on - strand, within Psyr_0288 at 307.175 kb on - strand, within Psyr_0288 at 307.175 kb on - strand, within Psyr_0288 at 307.191 kb on + strand, within Psyr_0288 at 307.191 kb on + strand, within Psyr_0288 at 307.192 kb on - strand, within Psyr_0288 at 307.205 kb on - strand at 307.410 kb on + strand at 307.411 kb on - strand at 307.424 kb on + strand at 307.425 kb on - strand at 307.583 kb on + strand at 307.584 kb on - strand at 307.649 kb on + strand, within Psyr_0289 at 307.650 kb on - strand, within Psyr_0289 at 307.772 kb on + strand, within Psyr_0289 at 307.772 kb on + strand, within Psyr_0289 at 307.773 kb on - strand, within Psyr_0289 at 307.773 kb on - strand, within Psyr_0289 at 307.773 kb on - strand, within Psyr_0289 at 307.947 kb on + strand, within Psyr_0289 at 307.947 kb on + strand, within Psyr_0289 at 308.058 kb on + strand, within Psyr_0289 at 308.089 kb on + strand, within Psyr_0289 at 308.089 kb on + strand, within Psyr_0289 at 308.089 kb on + strand, within Psyr_0289 at 308.090 kb on - strand, within Psyr_0289
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 305,568 + Psyr_0287 0.44 +0.3 305,570 - Psyr_0287 0.44 +0.2 305,570 - Psyr_0287 0.44 +2.6 305,570 - Psyr_0287 0.44 +0.6 305,570 - Psyr_0287 0.44 +0.5 305,682 - Psyr_0287 0.51 -0.8 306,044 + Psyr_0287 0.75 -0.5 306,078 + Psyr_0287 0.77 +1.4 306,166 + Psyr_0287 0.83 +0.0 306,166 + Psyr_0287 0.83 -1.0 306,197 + Psyr_0287 0.85 -0.5 306,215 + Psyr_0287 0.86 +1.1 306,216 - Psyr_0287 0.86 -0.1 306,421 + -2.7 306,421 + +0.7 306,421 + -0.4 306,422 - +0.7 306,422 - +0.5 306,422 - +1.2 306,422 - -0.5 306,422 - -0.0 306,424 + +0.9 306,425 - -1.7 306,623 + Psyr_0288 0.12 -0.9 306,624 - Psyr_0288 0.12 +0.4 306,624 - Psyr_0288 0.12 -2.0 306,624 - Psyr_0288 0.12 -0.2 306,653 + Psyr_0288 0.16 -1.6 306,653 + Psyr_0288 0.16 +0.3 306,653 + Psyr_0288 0.16 -0.5 306,844 + Psyr_0288 0.42 +0.7 306,845 - Psyr_0288 0.42 +0.5 306,850 - Psyr_0288 0.43 +0.2 306,850 - Psyr_0288 0.43 -0.4 306,953 + Psyr_0288 0.56 +1.0 306,953 + Psyr_0288 0.56 -1.5 307,017 + Psyr_0288 0.65 -0.7 307,164 + Psyr_0288 0.85 -1.0 307,174 + Psyr_0288 0.86 +2.0 307,174 + Psyr_0288 0.86 +0.1 307,174 + Psyr_0288 0.86 -0.2 307,174 + Psyr_0288 0.86 +0.1 307,174 + Psyr_0288 0.86 -0.9 307,175 - Psyr_0288 0.86 +0.5 307,175 - Psyr_0288 0.86 +0.6 307,175 - Psyr_0288 0.86 -1.2 307,191 + Psyr_0288 0.89 +0.1 307,191 + Psyr_0288 0.89 -0.5 307,192 - Psyr_0288 0.89 +1.1 307,205 - +0.4 307,410 + +0.1 307,411 - +1.5 307,424 + -0.2 307,425 - +0.7 307,583 + -0.7 307,584 - +0.7 307,649 + Psyr_0289 0.16 -2.0 307,650 - Psyr_0289 0.16 +0.2 307,772 + Psyr_0289 0.27 +4.3 307,772 + Psyr_0289 0.27 +0.1 307,773 - Psyr_0289 0.27 +0.8 307,773 - Psyr_0289 0.27 -1.6 307,773 - Psyr_0289 0.27 -0.0 307,947 + Psyr_0289 0.44 +1.0 307,947 + Psyr_0289 0.44 -0.3 308,058 + Psyr_0289 0.54 -1.4 308,089 + Psyr_0289 0.57 +1.2 308,089 + Psyr_0289 0.57 -2.9 308,089 + Psyr_0289 0.57 +0.8 308,090 - Psyr_0289 0.57 +0.6
Or see this region's nucleotide sequence