Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0287

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0286 and Psyr_0287 are separated by 120 nucleotidesPsyr_0287 and Psyr_0288 are separated by 104 nucleotides Psyr_0286: Psyr_0286 - conserved hypothetical protein, at 304,127 to 304,777 _0286 Psyr_0287: Psyr_0287 - Sulphate transporter, at 304,898 to 306,430 _0287 Psyr_0288: Psyr_0288 - Carbonate dehydratase, at 306,535 to 307,275 _0288 Position (kb) 304 305 306 307Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 303.948 kb on + strandat 303.949 kb on - strandat 304.001 kb on + strandat 304.011 kb on - strandat 304.030 kb on - strandat 304.032 kb on - strandat 304.032 kb on - strandat 304.053 kb on + strandat 304.057 kb on + strandat 304.058 kb on - strandat 304.066 kb on + strandat 304.067 kb on - strandat 304.067 kb on - strandat 304.071 kb on + strandat 304.071 kb on + strandat 304.071 kb on + strandat 304.072 kb on - strandat 304.155 kb on + strandat 304.155 kb on + strandat 304.155 kb on + strandat 304.155 kb on + strandat 304.155 kb on + strandat 304.156 kb on - strandat 304.156 kb on - strandat 304.156 kb on - strandat 304.156 kb on - strandat 304.156 kb on - strandat 304.156 kb on - strandat 304.161 kb on + strandat 304.161 kb on + strandat 304.161 kb on + strandat 304.161 kb on + strandat 304.161 kb on + strandat 304.161 kb on + strandat 304.161 kb on + strandat 304.162 kb on - strandat 304.162 kb on - strandat 304.162 kb on - strandat 304.162 kb on - strandat 304.162 kb on - strandat 304.292 kb on + strand, within Psyr_0286at 304.292 kb on + strand, within Psyr_0286at 304.293 kb on - strand, within Psyr_0286at 304.293 kb on - strand, within Psyr_0286at 304.365 kb on + strand, within Psyr_0286at 304.366 kb on - strand, within Psyr_0286at 304.460 kb on + strand, within Psyr_0286at 304.460 kb on + strand, within Psyr_0286at 304.461 kb on - strand, within Psyr_0286at 304.461 kb on - strand, within Psyr_0286at 304.499 kb on + strand, within Psyr_0286at 304.499 kb on + strand, within Psyr_0286at 304.499 kb on + strand, within Psyr_0286at 304.499 kb on + strand, within Psyr_0286at 304.499 kb on + strand, within Psyr_0286at 304.499 kb on + strand, within Psyr_0286at 304.500 kb on - strand, within Psyr_0286at 304.500 kb on - strand, within Psyr_0286at 304.500 kb on - strand, within Psyr_0286at 304.538 kb on - strand, within Psyr_0286at 304.538 kb on - strand, within Psyr_0286at 304.932 kb on + strandat 304.932 kb on + strandat 304.932 kb on + strandat 304.932 kb on + strandat 304.932 kb on + strandat 304.933 kb on - strandat 304.933 kb on - strandat 305.050 kb on - strandat 305.050 kb on - strandat 305.095 kb on + strand, within Psyr_0287at 305.255 kb on + strand, within Psyr_0287at 305.255 kb on + strand, within Psyr_0287at 305.256 kb on - strand, within Psyr_0287at 305.256 kb on - strand, within Psyr_0287at 305.304 kb on + strand, within Psyr_0287at 305.305 kb on - strand, within Psyr_0287at 305.305 kb on - strand, within Psyr_0287at 305.305 kb on - strand, within Psyr_0287at 305.305 kb on - strand, within Psyr_0287at 305.305 kb on - strand, within Psyr_0287at 305.379 kb on + strand, within Psyr_0287at 305.379 kb on + strand, within Psyr_0287at 305.379 kb on + strand, within Psyr_0287at 305.380 kb on - strand, within Psyr_0287at 305.380 kb on - strand, within Psyr_0287at 305.442 kb on - strand, within Psyr_0287at 305.442 kb on - strand, within Psyr_0287at 305.491 kb on + strand, within Psyr_0287at 305.568 kb on + strand, within Psyr_0287at 305.570 kb on - strand, within Psyr_0287at 305.570 kb on - strand, within Psyr_0287at 305.570 kb on - strand, within Psyr_0287at 305.570 kb on - strand, within Psyr_0287at 305.682 kb on - strand, within Psyr_0287at 306.044 kb on + strand, within Psyr_0287at 306.078 kb on + strand, within Psyr_0287at 306.166 kb on + strand, within Psyr_0287at 306.166 kb on + strand, within Psyr_0287at 306.197 kb on + strand, within Psyr_0287at 306.215 kb on + strand, within Psyr_0287at 306.216 kb on - strand, within Psyr_0287at 306.421 kb on + strandat 306.421 kb on + strandat 306.421 kb on + strandat 306.422 kb on - strandat 306.422 kb on - strandat 306.422 kb on - strandat 306.422 kb on - strandat 306.422 kb on - strandat 306.424 kb on + strandat 306.425 kb on - strandat 306.623 kb on + strand, within Psyr_0288at 306.624 kb on - strand, within Psyr_0288at 306.624 kb on - strand, within Psyr_0288at 306.624 kb on - strand, within Psyr_0288at 306.653 kb on + strand, within Psyr_0288at 306.653 kb on + strand, within Psyr_0288at 306.653 kb on + strand, within Psyr_0288at 306.844 kb on + strand, within Psyr_0288at 306.845 kb on - strand, within Psyr_0288at 306.850 kb on - strand, within Psyr_0288at 306.850 kb on - strand, within Psyr_0288at 306.953 kb on + strand, within Psyr_0288at 306.953 kb on + strand, within Psyr_0288at 307.017 kb on + strand, within Psyr_0288at 307.164 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.174 kb on + strand, within Psyr_0288at 307.175 kb on - strand, within Psyr_0288at 307.175 kb on - strand, within Psyr_0288at 307.175 kb on - strand, within Psyr_0288at 307.191 kb on + strand, within Psyr_0288at 307.191 kb on + strand, within Psyr_0288at 307.192 kb on - strand, within Psyr_0288at 307.205 kb on - strandat 307.410 kb on + strandat 307.411 kb on - strandat 307.424 kb on + strandat 307.425 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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303,948 + -1.2
303,949 - -0.5
304,001 + -1.3
304,011 - -0.4
304,030 - +0.3
304,032 - +1.9
304,032 - +1.5
304,053 + +0.1
304,057 + +1.0
304,058 - -1.5
304,066 + +0.4
304,067 - -2.0
304,067 - -0.5
304,071 + +0.0
304,071 + +1.3
304,071 + +0.9
304,072 - +1.7
304,155 + -0.8
304,155 + +1.3
304,155 + -0.3
304,155 + +0.3
304,155 + -0.9
304,156 - +0.1
304,156 - +0.3
304,156 - -2.8
304,156 - -1.1
304,156 - -1.5
304,156 - -1.3
304,161 + -1.3
304,161 + +1.4
304,161 + +1.0
304,161 + +0.9
304,161 + -1.5
304,161 + -1.0
304,161 + +0.2
304,162 - -1.9
304,162 - +0.2
304,162 - -0.9
304,162 - -2.9
304,162 - +0.3
304,292 + Psyr_0286 0.25 -1.5
304,292 + Psyr_0286 0.25 +0.9
304,293 - Psyr_0286 0.25 +0.1
304,293 - Psyr_0286 0.25 +0.9
304,365 + Psyr_0286 0.37 -0.9
304,366 - Psyr_0286 0.37 -2.4
304,460 + Psyr_0286 0.51 +0.7
304,460 + Psyr_0286 0.51 -2.0
304,461 - Psyr_0286 0.51 +0.2
304,461 - Psyr_0286 0.51 -0.9
304,499 + Psyr_0286 0.57 +3.7
304,499 + Psyr_0286 0.57 +1.7
304,499 + Psyr_0286 0.57 +0.5
304,499 + Psyr_0286 0.57 -1.3
304,499 + Psyr_0286 0.57 -0.3
304,499 + Psyr_0286 0.57 +0.5
304,500 - Psyr_0286 0.57 +0.1
304,500 - Psyr_0286 0.57 -2.0
304,500 - Psyr_0286 0.57 +0.2
304,538 - Psyr_0286 0.63 -0.3
304,538 - Psyr_0286 0.63 +1.4
304,932 + -0.4
304,932 + +0.0
304,932 + +0.1
304,932 + +0.6
304,932 + -0.7
304,933 - +0.3
304,933 - -1.0
305,050 - +0.7
305,050 - -0.1
305,095 + Psyr_0287 0.13 -0.6
305,255 + Psyr_0287 0.23 +0.1
305,255 + Psyr_0287 0.23 +1.3
305,256 - Psyr_0287 0.23 +0.8
305,256 - Psyr_0287 0.23 -0.4
305,304 + Psyr_0287 0.26 +0.9
305,305 - Psyr_0287 0.27 +0.2
305,305 - Psyr_0287 0.27 +3.6
305,305 - Psyr_0287 0.27 +0.2
305,305 - Psyr_0287 0.27 +2.2
305,305 - Psyr_0287 0.27 +1.1
305,379 + Psyr_0287 0.31 +0.0
305,379 + Psyr_0287 0.31 -0.2
305,379 + Psyr_0287 0.31 -0.3
305,380 - Psyr_0287 0.31 -0.2
305,380 - Psyr_0287 0.31 +0.4
305,442 - Psyr_0287 0.35 -0.5
305,442 - Psyr_0287 0.35 -0.2
305,491 + Psyr_0287 0.39 +0.1
305,568 + Psyr_0287 0.44 +0.3
305,570 - Psyr_0287 0.44 +0.2
305,570 - Psyr_0287 0.44 +2.6
305,570 - Psyr_0287 0.44 +0.6
305,570 - Psyr_0287 0.44 +0.5
305,682 - Psyr_0287 0.51 -0.8
306,044 + Psyr_0287 0.75 -0.5
306,078 + Psyr_0287 0.77 +1.4
306,166 + Psyr_0287 0.83 +0.0
306,166 + Psyr_0287 0.83 -1.0
306,197 + Psyr_0287 0.85 -0.5
306,215 + Psyr_0287 0.86 +1.1
306,216 - Psyr_0287 0.86 -0.1
306,421 + -2.7
306,421 + +0.7
306,421 + -0.4
306,422 - +0.7
306,422 - +0.5
306,422 - +1.2
306,422 - -0.5
306,422 - -0.0
306,424 + +0.9
306,425 - -1.7
306,623 + Psyr_0288 0.12 -0.9
306,624 - Psyr_0288 0.12 +0.4
306,624 - Psyr_0288 0.12 -2.0
306,624 - Psyr_0288 0.12 -0.2
306,653 + Psyr_0288 0.16 -1.6
306,653 + Psyr_0288 0.16 +0.3
306,653 + Psyr_0288 0.16 -0.5
306,844 + Psyr_0288 0.42 +0.7
306,845 - Psyr_0288 0.42 +0.5
306,850 - Psyr_0288 0.43 +0.2
306,850 - Psyr_0288 0.43 -0.4
306,953 + Psyr_0288 0.56 +1.0
306,953 + Psyr_0288 0.56 -1.5
307,017 + Psyr_0288 0.65 -0.7
307,164 + Psyr_0288 0.85 -1.0
307,174 + Psyr_0288 0.86 +2.0
307,174 + Psyr_0288 0.86 +0.1
307,174 + Psyr_0288 0.86 -0.2
307,174 + Psyr_0288 0.86 +0.1
307,174 + Psyr_0288 0.86 -0.9
307,175 - Psyr_0288 0.86 +0.5
307,175 - Psyr_0288 0.86 +0.6
307,175 - Psyr_0288 0.86 -1.2
307,191 + Psyr_0288 0.89 +0.1
307,191 + Psyr_0288 0.89 -0.5
307,192 - Psyr_0288 0.89 +1.1
307,205 - +0.4
307,410 + +0.1
307,411 - +1.5
307,424 + -0.2
307,425 - +0.7

Or see this region's nucleotide sequence