Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0158

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0157 and Psyr_0158 are separated by 93 nucleotidesPsyr_0158 and Psyr_0159 are separated by 45 nucleotides Psyr_0157: Psyr_0157 - Twin-arginine translocation pathway signal, at 170,483 to 172,120 _0157 Psyr_0158: Psyr_0158 - FAD dependent oxidoreductase, at 172,214 to 173,509 _0158 Psyr_0159: Psyr_0159 - HAD-superfamily hydrolase, subfamily IA, variant 2, at 173,555 to 174,223 _0159 Position (kb) 172 173 174Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on + strand, within Psyr_0157at 171.293 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.294 kb on - strand, within Psyr_0157at 171.387 kb on + strand, within Psyr_0157at 171.387 kb on + strand, within Psyr_0157at 171.388 kb on - strand, within Psyr_0157at 171.810 kb on + strand, within Psyr_0157at 171.810 kb on + strand, within Psyr_0157at 171.810 kb on + strand, within Psyr_0157at 171.811 kb on - strand, within Psyr_0157at 171.811 kb on - strand, within Psyr_0157at 171.811 kb on - strand, within Psyr_0157at 171.811 kb on - strand, within Psyr_0157at 171.811 kb on - strand, within Psyr_0157at 172.023 kb on - strandat 172.129 kb on + strandat 172.129 kb on + strandat 172.129 kb on + strandat 172.129 kb on + strandat 172.129 kb on + strandat 172.130 kb on - strandat 172.130 kb on - strandat 172.130 kb on - strandat 172.130 kb on - strandat 172.234 kb on - strandat 172.240 kb on - strandat 172.382 kb on + strand, within Psyr_0158at 172.382 kb on + strand, within Psyr_0158at 172.383 kb on - strand, within Psyr_0158at 172.383 kb on - strand, within Psyr_0158at 172.383 kb on - strand, within Psyr_0158at 172.383 kb on - strand, within Psyr_0158at 172.410 kb on + strand, within Psyr_0158at 172.410 kb on + strand, within Psyr_0158at 172.411 kb on - strand, within Psyr_0158at 172.482 kb on + strand, within Psyr_0158at 172.483 kb on - strand, within Psyr_0158at 172.632 kb on + strand, within Psyr_0158at 172.632 kb on + strand, within Psyr_0158at 172.632 kb on + strand, within Psyr_0158at 172.633 kb on - strand, within Psyr_0158at 172.633 kb on - strand, within Psyr_0158at 172.633 kb on - strand, within Psyr_0158at 172.633 kb on - strand, within Psyr_0158at 172.659 kb on + strand, within Psyr_0158at 172.659 kb on + strand, within Psyr_0158at 172.659 kb on + strand, within Psyr_0158at 172.659 kb on + strand, within Psyr_0158at 172.660 kb on - strand, within Psyr_0158at 172.660 kb on - strand, within Psyr_0158at 172.660 kb on - strand, within Psyr_0158at 172.660 kb on - strand, within Psyr_0158at 172.887 kb on + strand, within Psyr_0158at 172.887 kb on + strand, within Psyr_0158at 172.887 kb on + strand, within Psyr_0158at 172.888 kb on - strand, within Psyr_0158at 172.888 kb on - strand, within Psyr_0158at 172.956 kb on - strand, within Psyr_0158at 173.092 kb on - strand, within Psyr_0158at 173.196 kb on + strand, within Psyr_0158at 173.205 kb on + strand, within Psyr_0158at 173.205 kb on + strand, within Psyr_0158at 173.205 kb on + strand, within Psyr_0158at 173.205 kb on + strand, within Psyr_0158at 173.205 kb on + strand, within Psyr_0158at 173.205 kb on + strand, within Psyr_0158at 173.205 kb on + strand, within Psyr_0158at 173.205 kb on + strand, within Psyr_0158at 173.205 kb on + strand, within Psyr_0158at 173.205 kb on + strand, within Psyr_0158at 173.205 kb on + strand, within Psyr_0158at 173.205 kb on + strand, within Psyr_0158at 173.206 kb on - strand, within Psyr_0158at 173.206 kb on - strand, within Psyr_0158at 173.206 kb on - strand, within Psyr_0158at 173.206 kb on - strand, within Psyr_0158at 173.206 kb on - strand, within Psyr_0158at 173.206 kb on - strand, within Psyr_0158at 173.253 kb on + strand, within Psyr_0158at 173.253 kb on + strand, within Psyr_0158at 173.253 kb on + strand, within Psyr_0158at 173.253 kb on + strand, within Psyr_0158at 173.253 kb on + strand, within Psyr_0158at 173.253 kb on + strand, within Psyr_0158at 173.254 kb on - strand, within Psyr_0158at 173.254 kb on - strand, within Psyr_0158at 173.254 kb on - strand, within Psyr_0158at 173.273 kb on - strand, within Psyr_0158at 173.472 kb on + strandat 173.473 kb on - strandat 173.556 kb on + strandat 173.782 kb on + strand, within Psyr_0159at 173.782 kb on + strand, within Psyr_0159at 173.784 kb on + strand, within Psyr_0159at 173.784 kb on + strand, within Psyr_0159at 173.784 kb on + strand, within Psyr_0159at 173.785 kb on - strand, within Psyr_0159at 173.785 kb on - strand, within Psyr_0159at 173.961 kb on + strand, within Psyr_0159at 173.962 kb on - strand, within Psyr_0159at 173.964 kb on + strand, within Psyr_0159at 173.964 kb on + strand, within Psyr_0159at 173.964 kb on + strand, within Psyr_0159at 173.964 kb on + strand, within Psyr_0159at 173.964 kb on + strand, within Psyr_0159at 173.964 kb on + strand, within Psyr_0159at 173.964 kb on + strand, within Psyr_0159at 173.964 kb on + strand, within Psyr_0159at 173.964 kb on + strand, within Psyr_0159at 173.964 kb on + strand, within Psyr_0159at 173.965 kb on - strand, within Psyr_0159at 173.965 kb on - strand, within Psyr_0159at 173.965 kb on - strand, within Psyr_0159at 173.965 kb on - strand, within Psyr_0159at 173.965 kb on - strand, within Psyr_0159at 173.965 kb on - strand, within Psyr_0159at 173.965 kb on - strand, within Psyr_0159at 173.965 kb on - strand, within Psyr_0159at 174.042 kb on + strand, within Psyr_0159at 174.043 kb on - strand, within Psyr_0159at 174.078 kb on + strand, within Psyr_0159at 174.079 kb on - strand, within Psyr_0159at 174.183 kb on + strandat 174.196 kb on + strandat 174.197 kb on - strandat 174.197 kb on - strandat 174.319 kb on + strandat 174.319 kb on + strandat 174.320 kb on - strandat 174.320 kb on - strandat 174.320 kb on - strandat 174.348 kb on + strandat 174.349 kb on - strandat 174.452 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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171,293 + Psyr_0157 0.49 -0.4
171,293 + Psyr_0157 0.49 +1.8
171,293 + Psyr_0157 0.49 -1.8
171,293 + Psyr_0157 0.49 +0.8
171,293 + Psyr_0157 0.49 +0.5
171,293 + Psyr_0157 0.49 +0.5
171,293 + Psyr_0157 0.49 +0.7
171,293 + Psyr_0157 0.49 +2.8
171,293 + Psyr_0157 0.49 +0.1
171,293 - Psyr_0157 0.49 +0.5
171,294 - Psyr_0157 0.50 -0.1
171,294 - Psyr_0157 0.50 +0.2
171,294 - Psyr_0157 0.50 +1.3
171,294 - Psyr_0157 0.50 -0.4
171,294 - Psyr_0157 0.50 -0.1
171,294 - Psyr_0157 0.50 -0.7
171,294 - Psyr_0157 0.50 -2.6
171,294 - Psyr_0157 0.50 -1.2
171,294 - Psyr_0157 0.50 +2.2
171,294 - Psyr_0157 0.50 -1.1
171,294 - Psyr_0157 0.50 +0.5
171,294 - Psyr_0157 0.50 -3.1
171,294 - Psyr_0157 0.50 -0.8
171,294 - Psyr_0157 0.50 +0.1
171,294 - Psyr_0157 0.50 +0.2
171,294 - Psyr_0157 0.50 +1.3
171,294 - Psyr_0157 0.50 -0.4
171,387 + Psyr_0157 0.55 +0.6
171,387 + Psyr_0157 0.55 -0.6
171,388 - Psyr_0157 0.55 +0.6
171,810 + Psyr_0157 0.81 +0.4
171,810 + Psyr_0157 0.81 -0.6
171,810 + Psyr_0157 0.81 -0.7
171,811 - Psyr_0157 0.81 -1.5
171,811 - Psyr_0157 0.81 -1.9
171,811 - Psyr_0157 0.81 -1.4
171,811 - Psyr_0157 0.81 -0.2
171,811 - Psyr_0157 0.81 -0.9
172,023 - -1.6
172,129 + +0.6
172,129 + -0.0
172,129 + +2.3
172,129 + -1.8
172,129 + +1.2
172,130 - +0.9
172,130 - +0.8
172,130 - -0.1
172,130 - +1.4
172,234 - -0.4
172,240 - +0.6
172,382 + Psyr_0158 0.13 -0.7
172,382 + Psyr_0158 0.13 -1.1
172,383 - Psyr_0158 0.13 -1.4
172,383 - Psyr_0158 0.13 +1.3
172,383 - Psyr_0158 0.13 -0.9
172,383 - Psyr_0158 0.13 +0.5
172,410 + Psyr_0158 0.15 +0.5
172,410 + Psyr_0158 0.15 -0.1
172,411 - Psyr_0158 0.15 +1.9
172,482 + Psyr_0158 0.21 -1.4
172,483 - Psyr_0158 0.21 -0.9
172,632 + Psyr_0158 0.32 +0.4
172,632 + Psyr_0158 0.32 +1.7
172,632 + Psyr_0158 0.32 +0.8
172,633 - Psyr_0158 0.32 +1.4
172,633 - Psyr_0158 0.32 +0.1
172,633 - Psyr_0158 0.32 -1.5
172,633 - Psyr_0158 0.32 -1.5
172,659 + Psyr_0158 0.34 +4.0
172,659 + Psyr_0158 0.34 +0.3
172,659 + Psyr_0158 0.34 -0.3
172,659 + Psyr_0158 0.34 -0.2
172,660 - Psyr_0158 0.34 -1.4
172,660 - Psyr_0158 0.34 -0.7
172,660 - Psyr_0158 0.34 +1.4
172,660 - Psyr_0158 0.34 -1.1
172,887 + Psyr_0158 0.52 -1.2
172,887 + Psyr_0158 0.52 +0.0
172,887 + Psyr_0158 0.52 -1.2
172,888 - Psyr_0158 0.52 -1.4
172,888 - Psyr_0158 0.52 +2.8
172,956 - Psyr_0158 0.57 +1.9
173,092 - Psyr_0158 0.68 +1.5
173,196 + Psyr_0158 0.76 +1.5
173,205 + Psyr_0158 0.76 -1.2
173,205 + Psyr_0158 0.76 +0.4
173,205 + Psyr_0158 0.76 -0.1
173,205 + Psyr_0158 0.76 -0.5
173,205 + Psyr_0158 0.76 -1.2
173,205 + Psyr_0158 0.76 -0.0
173,205 + Psyr_0158 0.76 +0.4
173,205 + Psyr_0158 0.76 +0.6
173,205 + Psyr_0158 0.76 -0.1
173,205 + Psyr_0158 0.76 +0.5
173,205 + Psyr_0158 0.76 +1.6
173,205 + Psyr_0158 0.76 +0.7
173,206 - Psyr_0158 0.77 +1.0
173,206 - Psyr_0158 0.77 +1.8
173,206 - Psyr_0158 0.77 +0.8
173,206 - Psyr_0158 0.77 -0.3
173,206 - Psyr_0158 0.77 -1.2
173,206 - Psyr_0158 0.77 -0.3
173,253 + Psyr_0158 0.80 -0.2
173,253 + Psyr_0158 0.80 -0.8
173,253 + Psyr_0158 0.80 +0.2
173,253 + Psyr_0158 0.80 +0.3
173,253 + Psyr_0158 0.80 +1.0
173,253 + Psyr_0158 0.80 +2.2
173,254 - Psyr_0158 0.80 +0.4
173,254 - Psyr_0158 0.80 -0.3
173,254 - Psyr_0158 0.80 +3.9
173,273 - Psyr_0158 0.82 +0.6
173,472 + -2.3
173,473 - -1.4
173,556 + +0.1
173,782 + Psyr_0159 0.34 -0.2
173,782 + Psyr_0159 0.34 -1.2
173,784 + Psyr_0159 0.34 +0.8
173,784 + Psyr_0159 0.34 -0.3
173,784 + Psyr_0159 0.34 +0.2
173,785 - Psyr_0159 0.34 -1.1
173,785 - Psyr_0159 0.34 -1.0
173,961 + Psyr_0159 0.61 -1.7
173,962 - Psyr_0159 0.61 -0.4
173,964 + Psyr_0159 0.61 -0.2
173,964 + Psyr_0159 0.61 -1.1
173,964 + Psyr_0159 0.61 -2.2
173,964 + Psyr_0159 0.61 -0.0
173,964 + Psyr_0159 0.61 +0.8
173,964 + Psyr_0159 0.61 -1.4
173,964 + Psyr_0159 0.61 +0.4
173,964 + Psyr_0159 0.61 +0.3
173,964 + Psyr_0159 0.61 +0.8
173,964 + Psyr_0159 0.61 -1.3
173,965 - Psyr_0159 0.61 +0.7
173,965 - Psyr_0159 0.61 -0.5
173,965 - Psyr_0159 0.61 +2.2
173,965 - Psyr_0159 0.61 -0.1
173,965 - Psyr_0159 0.61 -2.1
173,965 - Psyr_0159 0.61 +0.4
173,965 - Psyr_0159 0.61 +1.8
173,965 - Psyr_0159 0.61 +0.5
174,042 + Psyr_0159 0.73 +0.5
174,043 - Psyr_0159 0.73 +1.3
174,078 + Psyr_0159 0.78 +0.8
174,079 - Psyr_0159 0.78 -1.6
174,183 + +1.8
174,196 + +0.4
174,197 - -0.3
174,197 - -1.2
174,319 + +1.1
174,319 + -2.4
174,320 - -0.3
174,320 - -0.1
174,320 - -0.2
174,348 + +0.4
174,349 - -2.1
174,452 - +0.5

Or see this region's nucleotide sequence