Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0104

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
114,717	+		Psyr_0103	0.54	-0.9
114,717	+		Psyr_0103	0.54	+0.3
114,717	+		Psyr_0103	0.54	+0.2
114,718	-		Psyr_0103	0.54	-2.2
114,718	-		Psyr_0103	0.54	-0.7
114,718	-		Psyr_0103	0.54	+0.3
114,718	-		Psyr_0103	0.54	-1.2
114,718	-		Psyr_0103	0.54	+0.3
114,757	+		Psyr_0103	0.64	+0.2
114,774	-		Psyr_0103	0.69	+1.6
114,808	+		Psyr_0103	0.78	-0.1
114,808	+		Psyr_0103	0.78	+0.6
114,809	-		Psyr_0103	0.78	+0.8
114,909	-				-2.4
114,935	+				-0.2
114,992	+				-3.0
114,993	-				-1.7
114,996	-				-0.4
115,014	+				+1.1
115,015	-				+0.7
115,015	-				-1.6
115,015	-				+0.2
115,015	-				-0.0
115,015	-				-1.2
115,065	+				+1.2
115,066	-				+0.8
115,071	+				-2.8
115,071	+				-0.4
115,071	+				+0.3
115,072	-				-1.4
115,072	-				+0.6
115,072	-				+0.9
115,072	-				-2.2
115,072	-				-0.6
115,072	-				-0.2
115,072	-				+0.5
115,072	-				+0.6
115,072	-				+0.5
115,080	+				-0.7
115,081	-				+0.3
115,150	+				-1.8
115,168	+				-1.4
115,168	+				+0.8
115,169	-				+0.1
115,169	-				-0.8
115,204	+				+0.1
115,204	+				+0.2
115,240	+				-1.5
115,241	-				-1.1
115,241	-				+0.8
115,273	-				+0.3
115,321	+				+0.4
115,322	-				-1.8
115,322	-				-0.6
115,353	+				-0.2
115,353	+				-2.4
115,354	-				+1.8
115,354	-				+1.2
115,371	-				+0.8
115,382	+				+0.4
115,382	+				-1.6
115,383	-				+1.4
115,383	-				+0.1
115,383	-				+0.2
115,418	-				+0.8
115,418	-				+0.2
115,570	+				+0.5
115,570	+				+0.0
115,571	-				+0.8
115,585	+				+0.1
115,586	-				+1.2
115,622	+				+1.3
115,622	+				+1.3
115,622	+				+0.4
115,622	+				+0.3
115,622	+				-2.1
115,622	+				+0.3
115,622	+				+0.2
115,622	+				+0.2
115,623	-				-1.2
115,623	-				-2.3
115,623	-				-0.6
115,623	-				-0.8
115,623	-				-1.0
115,623	-				-1.2
115,623	-				+0.6
115,623	-				-1.7
115,654	-				-0.8
115,727	-				-0.2
115,737	+				+0.6
115,737	+				-0.0
115,770	+				-2.4
115,770	+				+0.3
115,771	-				+0.6
115,771	-				-0.4
115,771	-				-0.7
115,786	+				+1.0
115,786	+				+4.3
115,787	-				-0.6
115,787	-				-0.4
115,787	-				+2.2
115,787	-				+0.9
115,787	-				-0.7
115,787	-				-1.2
115,885	+		Psyr_0104	0.15	+1.2
115,886	-		Psyr_0104	0.15	+0.5
115,898	+		Psyr_0104	0.16	-0.2
115,904	+		Psyr_0104	0.16	-0.3
115,905	-		Psyr_0104	0.17	+1.6
115,954	+		Psyr_0104	0.21	+1.6
115,989	+		Psyr_0104	0.24	-1.8
115,989	+		Psyr_0104	0.24	+0.0
115,989	+		Psyr_0104	0.24	+0.2
115,989	+		Psyr_0104	0.24	+0.2
115,990	-		Psyr_0104	0.24	+0.9
115,990	-		Psyr_0104	0.24	+0.4
115,990	-		Psyr_0104	0.24	+0.1
116,003	-		Psyr_0104	0.25	-1.2
116,005	+		Psyr_0104	0.25	+0.2
116,027	+		Psyr_0104	0.27	+4.4
116,028	-		Psyr_0104	0.27	+0.5
116,033	+		Psyr_0104	0.28	-0.3
116,033	+		Psyr_0104	0.28	-1.8
116,036	-		Psyr_0104	0.28	-1.4
116,036	-		Psyr_0104	0.28	+1.4
116,053	-		Psyr_0104	0.29	+3.3
116,108	-		Psyr_0104	0.34	-0.2
116,108	-		Psyr_0104	0.34	-1.2
116,216	+		Psyr_0104	0.43	+1.2
116,219	+		Psyr_0104	0.44	+0.1
116,305	+		Psyr_0104	0.51	+1.0
116,306	-		Psyr_0104	0.51	+0.2
116,322	-		Psyr_0104	0.52	-2.0
116,354	-		Psyr_0104	0.55	-1.8
116,373	+		Psyr_0104	0.57	+0.7
116,373	+		Psyr_0104	0.57	-1.4
116,374	-		Psyr_0104	0.57	-1.0
116,377	+		Psyr_0104	0.57	-0.1
116,377	+		Psyr_0104	0.57	-0.1
116,377	+		Psyr_0104	0.57	+0.3
116,377	+		Psyr_0104	0.57	+3.6
116,377	+		Psyr_0104	0.57	-0.6
116,377	+		Psyr_0104	0.57	-1.2
116,377	+		Psyr_0104	0.57	-2.7
116,377	+		Psyr_0104	0.57	+0.2
116,377	+		Psyr_0104	0.57	-0.1
116,377	+		Psyr_0104	0.57	-0.2
116,377	+		Psyr_0104	0.57	-2.9
116,377	+		Psyr_0104	0.57	-0.8
116,378	-		Psyr_0104	0.57	+0.5
116,378	-		Psyr_0104	0.57	+1.5
116,378	-		Psyr_0104	0.57	+1.8
116,378	-		Psyr_0104	0.57	-1.2
116,378	-		Psyr_0104	0.57	+0.4
116,378	-		Psyr_0104	0.57	-2.1
116,384	-		Psyr_0104	0.58	-1.0
116,384	-		Psyr_0104	0.58	+2.0
116,413	+		Psyr_0104	0.60	+0.9
116,413	+		Psyr_0104	0.60	+0.4
116,414	-		Psyr_0104	0.60	+1.6
116,453	+		Psyr_0104	0.64	-1.4
116,453	+		Psyr_0104	0.64	-0.6
116,530	+		Psyr_0104	0.70	-0.4
116,575	+		Psyr_0104	0.74	+2.3
116,619	+		Psyr_0104	0.78	+0.1
116,620	-		Psyr_0104	0.78	+0.4
116,620	-		Psyr_0104	0.78	-0.3
116,620	-		Psyr_0104	0.78	+0.1
116,741	-		Psyr_0104	0.89	-0.6
116,752	-		Psyr_0104	0.89	+0.8
116,766	+				-0.6
116,767	-				+0.6
116,803	-				+0.6
116,803	-				+0.1
116,821	+				-0.4
116,844	+				+2.9
116,844	+				+0.5
116,844	+				+0.3
116,844	+				-0.9
116,845	-				+0.2
116,861	-				-0.8
116,871	+				+0.7
116,896	+				-0.2
116,896	+				+0.8
116,896	+				-0.2
116,896	+				-2.1
116,896	+				+0.2
116,897	-				-1.9
116,897	-				+0.4
116,897	-				+0.8
116,897	-				-0.6
116,897	-				-1.2
116,908	+				-1.0
116,908	+				-3.0
116,908	+				+0.5
116,908	+				-0.2
116,908	+				-0.6
116,908	+				+0.8
116,908	+				-0.2
116,908	+				-1.2
116,908	+				+1.5
116,908	+				+0.6
116,908	+				+0.5
116,908	+				-1.5
116,909	-				-0.1
116,909	-				+1.6
116,909	-				+0.4
116,909	-				+0.9
116,909	-				+0.8
116,909	-				+0.5
116,909	-				+0.3
116,909	-				-0.4
116,909	-				+0.6
116,909	-				+0.4
116,909	-				+0.8
116,909	-				+1.6
116,909	-				-2.6
116,909	-				-0.7
116,909	-				-1.3
116,909	-				-0.0
116,909	-				-0.5
116,909	-				-0.0
116,909	-				-0.6
116,909	-				+1.1
116,909	-				-0.3
116,909	-				+0.5
116,909	-				+2.9
116,909	-				-0.0
116,930	+				-2.2
116,930	+				+2.3
116,931	-				-1.6
116,931	-				-1.1
116,931	-				+0.2
116,932	+				-0.7
116,933	-				+0.2
116,933	-				+0.3
116,933	-				+1.1
116,933	-				-3.1
116,933	-				-2.5