Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0024 and Psyr_0025 overlap by 1 nucleotides Psyr_0025 and Psyr_0026 are separated by 184 nucleotides
Psyr_0024: Psyr_0024 - coproporphyrinogen oxidase, at 27,721 to 28,635
_0024
Psyr_0025: Psyr_0025 - shikimate dehydrogenase, at 28,635 to 29,459
_0025
Psyr_0026: Psyr_0026 - Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter, at 29,644 to 31,212
_0026
Position (kb) 28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 27.644 kb on + strand at 27.644 kb on + strand at 27.644 kb on + strand at 27.644 kb on + strand at 27.644 kb on + strand at 27.645 kb on - strand at 27.645 kb on - strand at 27.645 kb on - strand at 27.645 kb on - strand at 29.088 kb on - strand, within Psyr_0025 at 29.088 kb on - strand, within Psyr_0025 at 29.140 kb on + strand, within Psyr_0025 at 29.269 kb on - strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.281 kb on - strand, within Psyr_0025 at 29.281 kb on - strand, within Psyr_0025 at 29.466 kb on - strand at 29.497 kb on + strand at 29.497 kb on + strand at 29.497 kb on + strand at 29.497 kb on + strand at 29.497 kb on + strand at 29.498 kb on - strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.610 kb on + strand at 29.610 kb on + strand at 29.610 kb on + strand at 29.611 kb on - strand at 29.611 kb on - strand at 29.611 kb on - strand at 29.638 kb on + strand at 29.638 kb on + strand at 29.638 kb on + strand at 29.638 kb on + strand at 29.639 kb on - strand at 29.639 kb on - strand at 29.639 kb on - strand at 29.639 kb on - strand at 29.639 kb on - strand at 29.792 kb on + strand at 29.792 kb on + strand at 29.845 kb on - strand, within Psyr_0026 at 29.868 kb on - strand, within Psyr_0026 at 29.868 kb on - strand, within Psyr_0026 at 29.966 kb on + strand, within Psyr_0026 at 29.967 kb on - strand, within Psyr_0026 at 29.986 kb on + strand, within Psyr_0026 at 29.986 kb on + strand, within Psyr_0026 at 29.986 kb on + strand, within Psyr_0026 at 29.987 kb on - strand, within Psyr_0026 at 29.996 kb on + strand, within Psyr_0026 at 29.996 kb on + strand, within Psyr_0026 at 29.997 kb on - strand, within Psyr_0026 at 29.997 kb on - strand, within Psyr_0026 at 30.248 kb on + strand, within Psyr_0026 at 30.248 kb on + strand, within Psyr_0026 at 30.248 kb on + strand, within Psyr_0026
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 27,644 + +0.3 27,644 + -0.0 27,644 + +3.2 27,644 + +0.8 27,644 + -0.4 27,645 - +0.1 27,645 - +0.2 27,645 - -0.4 27,645 - +1.2 29,088 - Psyr_0025 0.55 -0.8 29,088 - Psyr_0025 0.55 -0.9 29,140 + Psyr_0025 0.61 -2.3 29,269 - Psyr_0025 0.77 -0.0 29,280 + Psyr_0025 0.78 +0.6 29,280 + Psyr_0025 0.78 -1.9 29,280 + Psyr_0025 0.78 -1.1 29,280 + Psyr_0025 0.78 -1.2 29,280 + Psyr_0025 0.78 -0.5 29,281 - Psyr_0025 0.78 -0.2 29,281 - Psyr_0025 0.78 -1.8 29,466 - -2.7 29,497 + +0.4 29,497 + +1.8 29,497 + +0.5 29,497 + -0.9 29,497 + -1.2 29,498 - -1.7 29,499 + -0.8 29,499 + +0.8 29,499 + +0.4 29,499 + +0.2 29,499 + +0.6 29,499 + -0.8 29,499 + -0.4 29,499 + +1.0 29,499 + +1.7 29,499 + -1.1 29,499 + -0.2 29,499 + -0.2 29,499 + -0.4 29,499 + +1.7 29,499 + -2.1 29,499 + -0.3 29,499 + +1.8 29,500 - +2.2 29,500 - -1.7 29,500 - -0.2 29,500 - -0.4 29,500 - -1.1 29,500 - +0.5 29,500 - +0.1 29,500 - +0.8 29,500 - +0.3 29,500 - -0.4 29,500 - +0.0 29,500 - +0.1 29,500 - +0.4 29,503 + -0.2 29,503 + +0.5 29,503 + -1.6 29,503 + +3.9 29,503 + +2.8 29,503 + -1.4 29,503 + +0.5 29,503 + +0.6 29,503 + +0.2 29,503 + -3.3 29,503 + -1.0 29,503 + -0.5 29,503 + -0.5 29,503 + -0.3 29,503 + +0.4 29,503 + +0.4 29,503 + -1.2 29,503 + +0.2 29,503 + -0.8 29,503 + +0.9 29,503 + +0.5 29,503 + +0.1 29,504 - -0.2 29,504 - +0.9 29,504 - -1.0 29,504 - -0.1 29,504 - -1.6 29,504 - +3.1 29,504 - +1.0 29,504 - -0.5 29,504 - -1.6 29,504 - +0.5 29,504 - -1.9 29,504 - -0.9 29,504 - +0.6 29,610 + -0.5 29,610 + -0.8 29,610 + +2.4 29,611 - +1.4 29,611 - +1.0 29,611 - -1.0 29,638 + +0.3 29,638 + -0.4 29,638 + -0.2 29,638 + -0.5 29,639 - +0.8 29,639 - +0.2 29,639 - -1.1 29,639 - -0.0 29,639 - -1.0 29,792 + +1.2 29,792 + +0.8 29,845 - Psyr_0026 0.13 +2.0 29,868 - Psyr_0026 0.14 +0.8 29,868 - Psyr_0026 0.14 -0.1 29,966 + Psyr_0026 0.21 -1.4 29,967 - Psyr_0026 0.21 -1.6 29,986 + Psyr_0026 0.22 -1.0 29,986 + Psyr_0026 0.22 -0.5 29,986 + Psyr_0026 0.22 -1.8 29,987 - Psyr_0026 0.22 -0.7 29,996 + Psyr_0026 0.22 +0.3 29,996 + Psyr_0026 0.22 -0.6 29,997 - Psyr_0026 0.22 -2.2 29,997 - Psyr_0026 0.22 -2.5 30,248 + Psyr_0026 0.38 +1.3 30,248 + Psyr_0026 0.38 +0.6 30,248 + Psyr_0026 0.38 +2.1
Or see this region's nucleotide sequence