Strain Fitness in Pantoea sp. MT58 around IAI47_19020

Experiment: Defined media control, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Defined media control, anaerobic
34,209	-				+1.1
34,209	-				+0.2
34,209	-				-1.9
34,219	+				+1.2
34,240	+				+0.7
34,240	+				+2.4
34,240	+				-1.3
34,240	+				-1.1
34,240	+				+0.2
34,240	+				-2.1
34,240	+				-1.2
34,240	+				-0.9
34,241	-				+0.7
34,241	-				-1.2
34,241	-				+0.7
34,241	-				+2.0
34,241	-				+0.9
34,254	+				+1.1
34,255	-				-2.6
34,256	+				+2.2
34,256	+				-0.4
34,256	+				+0.5
34,256	+				+0.7
34,262	+				-1.7
34,263	-				+0.5
34,263	-				-1.4
34,300	-				+0.9
34,304	+				+0.2
34,304	+				+0.4
34,304	+				-0.3
34,304	+				+0.7
34,304	+				-0.8
34,305	-				-1.5
34,305	-				-0.1
34,305	-				+1.4
34,439	+		IAI47_19015	0.15	-0.0
34,439	+		IAI47_19015	0.15	-0.2
34,439	+		IAI47_19015	0.15	+1.0
34,439	+		IAI47_19015	0.15	+1.7
34,440	-		IAI47_19015	0.15	+0.5
34,440	-		IAI47_19015	0.15	-1.7
34,440	-		IAI47_19015	0.15	+0.1
34,440	-		IAI47_19015	0.15	-1.2
34,440	-		IAI47_19015	0.15	-0.4
34,442	+		IAI47_19015	0.15	+0.5
34,443	-		IAI47_19015	0.16	+1.2
34,443	-		IAI47_19015	0.16	+0.3
34,443	-		IAI47_19015	0.16	+3.0
34,445	+		IAI47_19015	0.16	-0.9
34,445	+		IAI47_19015	0.16	+0.9
34,446	-		IAI47_19015	0.16	+1.2
34,446	-		IAI47_19015	0.16	+0.0
34,446	-		IAI47_19015	0.16	+1.2
34,446	-		IAI47_19015	0.16	+1.2
34,503	+		IAI47_19015	0.22	+0.7
34,504	-		IAI47_19015	0.22	-2.6
34,536	-		IAI47_19015	0.26	-0.4
34,649	+		IAI47_19015	0.39	-1.3
34,659	+		IAI47_19015	0.40	+0.2
34,678	-		IAI47_19015	0.42	-0.7
34,722	+		IAI47_19015	0.47	+0.7
34,722	+		IAI47_19015	0.47	-0.6
34,735	+		IAI47_19015	0.49	+0.7
34,736	-		IAI47_19015	0.49	-2.3
34,736	-		IAI47_19015	0.49	+1.4
34,736	-		IAI47_19015	0.49	-2.1
34,736	-		IAI47_19015	0.49	-0.4
34,764	-		IAI47_19015	0.52	-0.1
34,764	-		IAI47_19015	0.52	+0.6
34,764	-		IAI47_19015	0.52	-0.0
34,822	-		IAI47_19015	0.58	-0.8
34,822	-		IAI47_19015	0.58	-0.2
34,879	+		IAI47_19015	0.65	+2.6
34,879	+		IAI47_19015	0.65	+0.7
34,879	+		IAI47_19015	0.65	-1.9
34,879	+		IAI47_19015	0.65	-2.0
34,879	+		IAI47_19015	0.65	-1.7
34,879	+		IAI47_19015	0.65	+0.1
34,880	-		IAI47_19015	0.65	+1.8
34,880	-		IAI47_19015	0.65	-2.2
34,880	-		IAI47_19015	0.65	-0.2
34,880	-		IAI47_19015	0.65	-0.3
34,880	-		IAI47_19015	0.65	-0.6
34,911	+		IAI47_19015	0.68	+2.3
34,941	-		IAI47_19015	0.72	-1.5
34,941	-		IAI47_19015	0.72	+1.7
34,941	-		IAI47_19015	0.72	+0.8
35,055	+		IAI47_19015	0.85	+1.1
35,055	+		IAI47_19015	0.85	-1.1
35,055	+		IAI47_19015	0.85	+1.6
35,056	-		IAI47_19015	0.85	-1.7
35,056	-		IAI47_19015	0.85	-1.6
35,056	-		IAI47_19015	0.85	+0.7
35,056	-		IAI47_19015	0.85	-0.8
35,078	+		IAI47_19015	0.87	-0.7
35,078	+		IAI47_19015	0.87	-1.1
35,078	+		IAI47_19015	0.87	+0.9
35,078	+		IAI47_19015	0.87	+0.3
35,078	+		IAI47_19015	0.87	+0.2
35,079	-		IAI47_19015	0.87	-0.3
35,079	-		IAI47_19015	0.87	-1.5
35,079	-		IAI47_19015	0.87	-0.3
35,079	-		IAI47_19015	0.87	+1.3
35,081	+		IAI47_19015	0.88	-0.3
35,081	+		IAI47_19015	0.88	+0.5
35,082	-		IAI47_19015	0.88	-2.2
35,082	-		IAI47_19015	0.88	-1.2
35,118	+				+0.7
35,118	+				+0.3
35,118	+				+2.3
35,119	-				-1.0
35,119	-				-0.1
35,119	-				-0.3
35,119	-				+1.5
35,119	-				-1.3
35,119	-				-0.6
35,124	+				-0.8
35,124	+				-0.3
35,167	+				-1.5
35,168	-				-0.7
35,210	+				+0.4
35,211	-				+0.3
35,211	-				-0.3
35,222	+				+1.9
35,222	+				-0.6
35,222	+				+3.2
35,223	-				-1.2
35,223	-				-1.1
35,289	+		IAI47_19020	0.20	+0.1
35,289	+		IAI47_19020	0.20	-1.3
35,289	+		IAI47_19020	0.20	-0.2
35,290	-		IAI47_19020	0.20	-0.9
35,290	-		IAI47_19020	0.20	-0.2
35,290	-		IAI47_19020	0.20	-0.4
35,290	-		IAI47_19020	0.20	-0.1
35,290	-		IAI47_19020	0.20	+0.4
35,290	-		IAI47_19020	0.20	+1.5
35,290	-		IAI47_19020	0.20	-1.8
35,290	-		IAI47_19020	0.20	-0.4
35,290	-		IAI47_19020	0.20	+0.2
35,355	+		IAI47_19020	0.37	-0.2
35,355	+		IAI47_19020	0.37	+0.3
35,356	-		IAI47_19020	0.37	-2.1
35,356	-		IAI47_19020	0.37	+1.3
35,379	+		IAI47_19020	0.43	-0.1
35,380	-		IAI47_19020	0.43	-0.7
35,380	-		IAI47_19020	0.43	+1.0
35,380	-		IAI47_19020	0.43	-1.6
35,421	+		IAI47_19020	0.53	-2.3
35,421	+		IAI47_19020	0.53	-1.0
35,422	-		IAI47_19020	0.53	+1.7
35,448	+		IAI47_19020	0.60	-1.6
35,449	-		IAI47_19020	0.60	+0.2
35,449	-		IAI47_19020	0.60	+1.2
35,449	-		IAI47_19020	0.60	+0.3
35,449	-		IAI47_19020	0.60	+0.7
35,449	-		IAI47_19020	0.60	-0.3
35,535	+		IAI47_19020	0.82	-0.7
35,535	+		IAI47_19020	0.82	-0.2
35,535	+		IAI47_19020	0.82	-0.6
35,536	-		IAI47_19020	0.82	+0.5
35,536	-		IAI47_19020	0.82	-1.6
35,536	-		IAI47_19020	0.82	+1.5
35,622	-				+1.7
35,622	-				-2.6
35,625	-				+0.3
35,625	-				-0.1
35,636	+				-0.6
35,636	+				+0.1
35,636	+				-0.1
35,637	-				+0.5
35,637	-				+0.2
35,642	+				-1.6
35,681	+				-0.7
35,681	+				-2.3
35,681	+				+0.6
35,681	+				+3.2
35,682	-				+1.1
35,682	-				-1.5
35,682	-				+1.3
35,682	-				-0.9
35,682	-				-0.5
35,682	-				-0.0
35,682	-				-0.1
35,682	-				+0.3
35,682	-				+1.6
35,689	+				+0.1
35,691	+				-0.2
35,702	+				+0.2
35,703	-				+1.0
35,703	-				-1.3
35,705	+				+0.9
35,705	+				+0.8
35,705	+				-0.6
35,706	-				-0.4
35,706	-				+1.7
35,706	-				+0.7
35,706	-				+0.8
35,706	-				+1.8
35,708	+				+1.1
35,709	-				+1.0
35,737	+				+1.2
35,737	+				+0.2
35,737	+				-0.2
35,737	+				-0.6
35,737	+				-0.7
35,737	+				-1.8
35,737	+				+1.1
35,737	+				-0.6
35,737	+				-1.4
35,737	+				-2.8
35,738	-				+0.5
35,738	-				+0.6
35,738	-				-1.3
35,738	-				+0.2
35,738	-				-0.6
35,738	-				+0.3
35,739	+				+1.5
35,739	+				+0.9
35,740	-				+0.1
35,740	-				+2.2
35,749	+				+0.2
35,749	+				-1.7
35,750	-				-1.5
35,750	-				-0.3
35,750	-				-0.7
35,750	-				+1.7
35,750	-				-0.7
35,752	+				+0.2
35,766	+				+0.2
35,793	-				-0.6
35,793	-				-1.2
35,794	+				+1.2
35,794	+				+0.3
35,794	+				+1.3
35,795	-				+0.7
35,795	-				+0.8
35,795	-				+1.0
35,795	-				+1.5
35,795	-				+1.8
35,846	+		IAI47_19025	0.12	+0.1
35,846	+		IAI47_19025	0.12	+0.0
35,847	-		IAI47_19025	0.12	+1.7
35,847	-		IAI47_19025	0.12	+1.0
35,851	+		IAI47_19025	0.13	+0.5
35,851	+		IAI47_19025	0.13	+0.5
35,852	-		IAI47_19025	0.13	-0.3
35,876	-		IAI47_19025	0.15	-2.9
35,933	+		IAI47_19025	0.21	+0.6
35,966	+		IAI47_19025	0.24	-1.0
35,966	+		IAI47_19025	0.24	-0.4
35,966	+		IAI47_19025	0.24	+0.1
35,994	+		IAI47_19025	0.27	+1.4
36,035	+		IAI47_19025	0.31	+1.2
36,061	+		IAI47_19025	0.33	-0.7
36,061	+		IAI47_19025	0.33	+1.3
36,062	-		IAI47_19025	0.33	-0.3
36,062	-		IAI47_19025	0.33	-1.6
36,062	-		IAI47_19025	0.33	+1.3
36,062	-		IAI47_19025	0.33	+1.7
36,062	-		IAI47_19025	0.33	-0.2
36,185	-		IAI47_19025	0.45	-0.7
36,264	+		IAI47_19025	0.53	+1.4
36,265	-		IAI47_19025	0.53	-0.7
36,265	-		IAI47_19025	0.53	+0.9
36,287	+		IAI47_19025	0.55	-0.6
36,287	+		IAI47_19025	0.55	+0.2
36,288	-		IAI47_19025	0.56	+2.1
36,288	-		IAI47_19025	0.56	-0.7
36,316	+		IAI47_19025	0.58	-1.8
36,316	+		IAI47_19025	0.58	-2.5
36,316	+		IAI47_19025	0.58	-0.3
36,340	+		IAI47_19025	0.61	+1.5
36,350	-		IAI47_19025	0.62	+0.4
36,350	-		IAI47_19025	0.62	+0.4
36,350	-		IAI47_19025	0.62	-1.0
36,350	-		IAI47_19025	0.62	-0.0
36,350	-		IAI47_19025	0.62	+2.0
36,393	+		IAI47_19025	0.66	+3.4
36,394	-		IAI47_19025	0.66	-1.3
36,406	+		IAI47_19025	0.67	+1.7
36,436	+		IAI47_19025	0.70	-0.3
36,437	-		IAI47_19025	0.70	-1.1
36,515	+		IAI47_19025	0.78	-0.6
36,515	+		IAI47_19025	0.78	-0.8
36,541	+		IAI47_19025	0.80	+1.1
36,541	+		IAI47_19025	0.80	-0.9
36,542	-		IAI47_19025	0.81	-2.0
36,542	-		IAI47_19025	0.81	+0.3