Strain Fitness in Pantoea sp. MT58 around IAI47_17875

Experiment: Defined media control, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Defined media control, anaerobic
3,795,504	+		IAI47_17870	0.57	+0.7
3,795,504	+		IAI47_17870	0.57	-0.8
3,795,504	+		IAI47_17870	0.57	+0.2
3,795,504	+		IAI47_17870	0.57	-0.3
3,795,512	-		IAI47_17870	0.57	+1.1
3,795,521	+		IAI47_17870	0.58	+0.2
3,795,521	+		IAI47_17870	0.58	+0.4
3,795,522	-		IAI47_17870	0.58	+0.1
3,795,522	-		IAI47_17870	0.58	+1.2
3,795,522	-		IAI47_17870	0.58	-1.9
3,795,522	-		IAI47_17870	0.58	-1.1
3,795,552	+		IAI47_17870	0.61	-0.7
3,795,565	+		IAI47_17870	0.62	+0.4
3,795,566	-		IAI47_17870	0.62	-1.6
3,795,566	-		IAI47_17870	0.62	+0.7
3,795,721	+		IAI47_17870	0.74	+1.2
3,795,727	+		IAI47_17870	0.75	-2.5
3,795,727	+		IAI47_17870	0.75	+0.2
3,795,727	+		IAI47_17870	0.75	-1.4
3,795,727	+		IAI47_17870	0.75	-0.1
3,795,727	+		IAI47_17870	0.75	-0.8
3,795,766	+		IAI47_17870	0.78	-1.1
3,795,766	+		IAI47_17870	0.78	-0.6
3,795,766	+		IAI47_17870	0.78	+1.1
3,795,767	-		IAI47_17870	0.78	+0.1
3,795,767	-		IAI47_17870	0.78	-1.4
3,795,778	+		IAI47_17870	0.79	-0.1
3,795,778	+		IAI47_17870	0.79	-2.2
3,795,778	+		IAI47_17870	0.79	+0.0
3,795,779	-		IAI47_17870	0.79	-0.2
3,795,790	+		IAI47_17870	0.80	-0.6
3,795,790	+		IAI47_17870	0.80	+0.0
3,795,791	-		IAI47_17870	0.80	+1.3
3,795,802	+		IAI47_17870	0.80	-0.2
3,795,812	-		IAI47_17870	0.81	-0.6
3,795,829	+		IAI47_17870	0.83	-2.1
3,795,829	+		IAI47_17870	0.83	-0.3
3,795,829	+		IAI47_17870	0.83	+0.1
3,795,829	+		IAI47_17870	0.83	-1.6
3,795,829	+		IAI47_17870	0.83	-0.3
3,795,829	+		IAI47_17870	0.83	-0.3
3,795,829	+		IAI47_17870	0.83	-0.7
3,795,829	+		IAI47_17870	0.83	-1.9
3,795,829	+		IAI47_17870	0.83	-2.6
3,795,830	-		IAI47_17870	0.83	-0.0
3,795,830	-		IAI47_17870	0.83	+0.0
3,795,830	-		IAI47_17870	0.83	-0.4
3,795,830	-		IAI47_17870	0.83	-0.6
3,795,830	-		IAI47_17870	0.83	-0.4
3,795,830	-		IAI47_17870	0.83	-2.2
3,795,830	-		IAI47_17870	0.83	+0.8
3,795,830	-		IAI47_17870	0.83	-1.0
3,795,841	+		IAI47_17870	0.84	+0.9
3,795,842	-		IAI47_17870	0.84	-4.1
3,795,853	+		IAI47_17870	0.85	-0.2
3,795,854	-		IAI47_17870	0.85	+2.5
3,795,854	-		IAI47_17870	0.85	-0.5
3,795,897	+		IAI47_17870	0.88	-1.7
3,795,898	-		IAI47_17870	0.88	+0.2
3,795,912	-		IAI47_17870	0.89	+0.8
3,795,937	+				-0.4
3,795,937	+				+0.2
3,795,937	+				-1.9
3,795,937	+				-0.5
3,795,938	-				-2.8
3,795,938	-				-0.1
3,795,948	+				+0.7
3,795,948	+				-0.2
3,795,948	+				-0.2
3,795,948	+				-1.2
3,795,948	+				+0.0
3,795,949	-				-0.7
3,795,949	-				-0.4
3,795,998	+				-3.0
3,795,999	-				+1.0
3,795,999	-				+1.4
3,796,008	+				+1.0
3,796,008	+				-0.7
3,796,009	-				-1.3
3,796,095	+				+0.3
3,796,096	-				+0.4
3,796,096	-				+1.1
3,796,103	+				+0.5
3,796,103	+				+1.4
3,796,109	+				-0.4
3,796,110	-				+1.2
3,796,110	-				+0.6
3,796,133	+				-0.8
3,796,164	+				-1.9
3,796,164	+				-0.1
3,796,164	+				+0.7
3,796,164	+				+1.5
3,796,165	-				+1.7
3,796,165	-				-0.8
3,796,165	-				+0.1
3,796,165	-				+0.1
3,796,165	-				-0.6
3,796,205	+				+0.9
3,796,205	+				-1.6
3,796,205	+				+0.9
3,796,205	+				+0.6
3,796,205	+				-0.2
3,796,205	+				-1.4
3,796,206	-				-1.4
3,796,206	-				-1.3
3,796,206	-				-0.2
3,796,206	-				+0.8
3,796,206	-				-1.1
3,796,206	-				-1.5
3,796,206	-				+1.0
3,796,206	-				+0.9
3,796,208	+				+0.3
3,796,208	+				+0.3
3,796,208	+				-1.0
3,796,208	+				-0.6
3,796,208	+				+0.4
3,796,209	-				+2.4
3,796,209	-				+0.4
3,796,209	-				+1.9
3,796,209	-				-1.7
3,796,271	+				+1.2
3,796,272	-				+0.4
3,796,272	-				-2.2
3,796,278	+				-0.6
3,796,279	-				+0.0
3,796,347	+				-1.6
3,796,347	+				-0.8
3,796,348	-				+0.0
3,796,355	+				+0.9
3,796,355	+				-1.5
3,796,355	+				+0.4
3,796,355	+				-0.0
3,796,356	-				-2.1
3,796,383	+				+0.0
3,796,383	+				+0.6
3,796,384	-				-0.2
3,796,387	+				-0.8
3,796,387	+				-1.8
3,796,387	+				-0.2
3,796,387	+				+0.6
3,796,387	+				+1.1
3,796,388	-				+1.5
3,796,388	-				+2.2
3,796,397	+				+0.4
3,796,398	-				-1.1
3,796,398	-				-1.8
3,796,408	+				+0.2
3,796,409	-				-0.8
3,796,409	-				+0.8
3,796,420	-				-1.7
3,796,453	+				-0.4
3,796,453	+				-0.2
3,796,453	+				+0.6
3,796,453	+				+0.9
3,796,453	+				-0.1
3,796,454	-				+1.5
3,796,454	-				+1.1
3,796,463	-				+0.0
3,796,463	-				-1.7
3,796,468	-				-1.5
3,796,618	+		IAI47_17875	0.23	-0.0
3,796,618	+		IAI47_17875	0.23	+0.6
3,796,618	+		IAI47_17875	0.23	+0.1
3,796,618	+		IAI47_17875	0.23	+0.1
3,796,619	-		IAI47_17875	0.24	+0.9
3,796,619	-		IAI47_17875	0.24	-0.4
3,796,628	+		IAI47_17875	0.25	-0.7
3,796,628	+		IAI47_17875	0.25	+2.6
3,796,629	-		IAI47_17875	0.25	+1.2
3,796,629	-		IAI47_17875	0.25	-1.4
3,796,685	+		IAI47_17875	0.36	-1.2
3,796,744	+		IAI47_17875	0.48	-1.4
3,796,744	+		IAI47_17875	0.48	+0.4
3,796,744	+		IAI47_17875	0.48	-1.6
3,796,744	+		IAI47_17875	0.48	-0.6
3,796,744	+		IAI47_17875	0.48	-0.0
3,796,744	+		IAI47_17875	0.48	-0.6
3,796,744	+		IAI47_17875	0.48	-1.0
3,796,745	-		IAI47_17875	0.48	+0.7
3,796,745	-		IAI47_17875	0.48	+0.5
3,796,745	-		IAI47_17875	0.48	-0.3
3,796,745	-		IAI47_17875	0.48	+1.7
3,796,745	-		IAI47_17875	0.48	+1.0
3,796,745	-		IAI47_17875	0.48	+1.1
3,796,745	-		IAI47_17875	0.48	-1.2
3,796,745	-		IAI47_17875	0.48	+1.9
3,796,745	-		IAI47_17875	0.48	+0.4
3,796,745	-		IAI47_17875	0.48	+0.2
3,796,745	-		IAI47_17875	0.48	-0.2
3,796,745	-		IAI47_17875	0.48	-0.1
3,796,745	-		IAI47_17875	0.48	-0.9
3,796,745	-		IAI47_17875	0.48	+1.3
3,796,745	-		IAI47_17875	0.48	-1.7
3,796,748	+		IAI47_17875	0.48	+0.3
3,796,748	+		IAI47_17875	0.48	+0.3
3,796,748	+		IAI47_17875	0.48	-2.7
3,796,748	+		IAI47_17875	0.48	+0.9
3,796,748	+		IAI47_17875	0.48	+1.7
3,796,749	-		IAI47_17875	0.48	+0.1
3,796,749	-		IAI47_17875	0.48	+0.4
3,796,749	-		IAI47_17875	0.48	-0.2
3,796,749	-		IAI47_17875	0.48	+1.4
3,796,749	-		IAI47_17875	0.48	+0.6
3,796,749	-		IAI47_17875	0.48	+0.0
3,796,749	-		IAI47_17875	0.48	+0.3
3,796,749	-		IAI47_17875	0.48	+1.0
3,796,749	-		IAI47_17875	0.48	+1.1
3,796,783	+		IAI47_17875	0.55	-2.3
3,796,783	+		IAI47_17875	0.55	+1.2
3,796,783	+		IAI47_17875	0.55	+1.3
3,796,783	+		IAI47_17875	0.55	+0.1
3,796,783	+		IAI47_17875	0.55	+0.4
3,796,783	+		IAI47_17875	0.55	-2.4
3,796,783	+		IAI47_17875	0.55	+0.0
3,796,783	+		IAI47_17875	0.55	+0.3
3,796,783	+		IAI47_17875	0.55	-0.8
3,796,783	+		IAI47_17875	0.55	-1.7
3,796,783	+		IAI47_17875	0.55	-0.7
3,796,783	+		IAI47_17875	0.55	-0.4
3,796,783	+		IAI47_17875	0.55	+0.6
3,796,784	-		IAI47_17875	0.55	-0.1
3,796,784	-		IAI47_17875	0.55	-0.8
3,796,784	-		IAI47_17875	0.55	+0.2
3,796,784	-		IAI47_17875	0.55	-0.8
3,796,784	-		IAI47_17875	0.55	+0.8
3,796,784	-		IAI47_17875	0.55	-1.0
3,796,784	-		IAI47_17875	0.55	+1.2
3,796,784	-		IAI47_17875	0.55	+1.5
3,796,784	-		IAI47_17875	0.55	+0.2
3,796,890	+		IAI47_17875	0.75	+1.2
3,796,890	+		IAI47_17875	0.75	+0.1
3,796,891	-		IAI47_17875	0.76	+3.8
3,796,891	-		IAI47_17875	0.76	-0.3
3,796,921	-		IAI47_17875	0.81	-1.5
3,796,921	-		IAI47_17875	0.81	-0.1
3,796,921	-		IAI47_17875	0.81	-0.3
3,796,921	-		IAI47_17875	0.81	+1.2
3,796,921	-				+2.2
3,796,921	-		IAI47_17875	0.81	-2.0
3,796,921	-		IAI47_17875	0.81	-1.7
3,796,975	+				+2.0
3,796,975	+				+0.2
3,796,975	+				-0.4
3,796,976	-				+1.6
3,796,976	-				-0.6
3,796,976	-				+1.8
3,796,993	+				+0.7
3,797,048	+				+0.5
3,797,048	+				-1.6
3,797,048	+				-1.7
3,797,048	+				-1.3
3,797,049	-				+1.2
3,797,049	-				+1.2
3,797,108	+				-0.2
3,797,108	+				-0.1
3,797,109	-				-1.8
3,797,146	+		IAI47_17880	0.18	+0.2
3,797,146	+		IAI47_17880	0.18	+2.3
3,797,175	-		IAI47_17880	0.32	+0.9
3,797,181	-		IAI47_17880	0.35	+1.6
3,797,197	-		IAI47_17880	0.42	+1.3
3,797,218	-		IAI47_17880	0.52	+1.1
3,797,218	-		IAI47_17880	0.52	+0.7
3,797,235	+		IAI47_17880	0.60	+0.6
3,797,235	+		IAI47_17880	0.60	+0.4
3,797,235	+		IAI47_17880	0.60	+1.3
3,797,235	+		IAI47_17880	0.60	-0.5
3,797,235	+		IAI47_17880	0.60	-0.1
3,797,235	+		IAI47_17880	0.60	-1.8
3,797,235	+		IAI47_17880	0.60	+0.5
3,797,236	-		IAI47_17880	0.61	-1.5
3,797,236	-		IAI47_17880	0.61	+0.8
3,797,236	-		IAI47_17880	0.61	-0.2
3,797,236	-		IAI47_17880	0.61	+0.6
3,797,296	-		IAI47_17880	0.89	+0.9
3,797,346	+				-2.8
3,797,346	+				+0.5
3,797,347	-				+1.5
3,797,347	-				-0.2
3,797,351	-				+1.2
3,797,376	+				+1.0
3,797,391	-				+1.0
3,797,404	-				+1.2
3,797,404	-				+0.8
3,797,404	-				+1.6
3,797,409	+				-0.8
3,797,409	+				-0.4
3,797,409	+				-0.1
3,797,409	+				+3.2
3,797,409	+				+0.5
3,797,415	+				+1.7
3,797,419	-				+0.8
3,797,419	-				+0.6
3,797,441	+				+0.3
3,797,442	-				+0.1
3,797,442	-				-0.6
3,797,444	+				-0.6
3,797,445	-				+1.4
3,797,445	-				+1.2
3,797,451	+				+1.6
3,797,452	-				+1.6
3,797,452	-				+0.0
3,797,452	-				+1.5
3,797,452	-				-0.4
3,797,452	-				+0.8
3,797,520	-				+1.4
3,797,562	+				+1.5
3,797,562	+				-1.6
3,797,563	-				+0.2
3,797,626	+		IAI47_17885	0.11	+1.5
3,797,648	+		IAI47_17885	0.12	+0.5
3,797,648	+		IAI47_17885	0.12	-0.3
3,797,648	+		IAI47_17885	0.12	+1.2
3,797,648	+		IAI47_17885	0.12	-1.0
3,797,648	+		IAI47_17885	0.12	+1.3
3,797,648	+		IAI47_17885	0.12	-1.9
3,797,649	-		IAI47_17885	0.12	+1.1
3,797,649	-		IAI47_17885	0.12	-0.6
3,797,649	-		IAI47_17885	0.12	-1.1
3,797,654	+		IAI47_17885	0.13	-0.3
3,797,655	-		IAI47_17885	0.13	-0.1
3,797,655	-		IAI47_17885	0.13	-2.2
3,797,704	+		IAI47_17885	0.17	-0.1
3,797,704	+		IAI47_17885	0.17	-1.0
3,797,704	+		IAI47_17885	0.17	+1.8
3,797,705	-		IAI47_17885	0.17	-0.6
3,797,705	-		IAI47_17885	0.17	+0.2
3,797,705	-		IAI47_17885	0.17	-0.6
3,797,733	+		IAI47_17885	0.19	+1.2
3,797,733	+		IAI47_17885	0.19	+1.7
3,797,733	+		IAI47_17885	0.19	+0.3
3,797,733	+		IAI47_17885	0.19	+0.7
3,797,733	+		IAI47_17885	0.19	-1.8
3,797,733	+		IAI47_17885	0.19	+0.9
3,797,733	+		IAI47_17885	0.19	-1.6
3,797,733	+		IAI47_17885	0.19	+0.1
3,797,734	-		IAI47_17885	0.19	-0.3
3,797,734	-		IAI47_17885	0.19	-2.2
3,797,734	-		IAI47_17885	0.19	+0.0
3,797,750	-		IAI47_17885	0.20	+1.3
3,797,750	-		IAI47_17885	0.20	-1.2
3,797,750	-		IAI47_17885	0.20	+0.2
3,797,795	+		IAI47_17885	0.24	+0.6
3,797,796	-		IAI47_17885	0.24	-0.4
3,797,821	+		IAI47_17885	0.25	-0.3
3,797,822	-		IAI47_17885	0.26	-0.0
3,797,848	-		IAI47_17885	0.28	+0.6
3,797,891	+		IAI47_17885	0.31	+2.4
3,797,891	+		IAI47_17885	0.31	-0.8
3,797,942	-		IAI47_17885	0.35	-2.5
3,797,963	-		IAI47_17885	0.36	-0.1
3,797,963	-		IAI47_17885	0.36	-0.1
3,797,969	+		IAI47_17885	0.37	-0.7
3,797,969	+		IAI47_17885	0.37	-0.7
3,797,970	-		IAI47_17885	0.37	-1.5
3,797,975	+		IAI47_17885	0.37	-0.6
3,797,975	+		IAI47_17885	0.37	+1.6
3,797,975	+		IAI47_17885	0.37	-1.6
3,797,975	+		IAI47_17885	0.37	-0.1
3,797,976	-		IAI47_17885	0.37	+2.2
3,797,976	-		IAI47_17885	0.37	+1.6
3,797,976	-		IAI47_17885	0.37	+0.3
3,797,976	-		IAI47_17885	0.37	+0.7
3,797,976	-		IAI47_17885	0.37	+0.8
3,797,988	+		IAI47_17885	0.38	-1.0
3,797,988	+		IAI47_17885	0.38	+0.2
3,797,988	+		IAI47_17885	0.38	+0.1
3,797,989	-		IAI47_17885	0.38	+1.1
3,797,989	-		IAI47_17885	0.38	-0.7
3,797,989	-		IAI47_17885	0.38	+1.2
3,797,989	-		IAI47_17885	0.38	-1.9
3,797,989	-		IAI47_17885	0.38	-0.9
3,797,989	-		IAI47_17885	0.38	-0.3
3,797,989	-		IAI47_17885	0.38	+0.1
3,797,991	+		IAI47_17885	0.38	+0.3
3,797,992	-		IAI47_17885	0.38	+0.3