Experiment: Defined media control, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03475 and IAI47_03480 are separated by 1 nucleotides IAI47_03480 and IAI47_03485 are separated by 218 nucleotides IAI47_03485 and IAI47_03490 are separated by 218 nucleotides IAI47_03490 and IAI47_03495 are separated by 320 nucleotides
IAI47_03475: IAI47_03475 - cytochrome d ubiquinol oxidase subunit II, at 726,496 to 727,500
_03475
IAI47_03480: IAI47_03480 - DUF2474 domain-containing protein, at 727,502 to 727,675
_03480
IAI47_03485: IAI47_03485 - helix-turn-helix domain-containing protein, at 727,894 to 728,763
_03485
IAI47_03490: IAI47_03490 - hypothetical protein, at 728,982 to 729,176
_03490
IAI47_03495: IAI47_03495 - siderophore-interacting protein, at 729,497 to 730,279
_03495
Position (kb) 727
728
729 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 727.003 kb on + strand, within IAI47_03475 at 727.004 kb on - strand, within IAI47_03475 at 727.029 kb on + strand, within IAI47_03475 at 727.029 kb on + strand, within IAI47_03475 at 727.029 kb on + strand, within IAI47_03475 at 727.030 kb on - strand, within IAI47_03475 at 727.030 kb on - strand, within IAI47_03475 at 727.030 kb on - strand, within IAI47_03475 at 727.030 kb on - strand, within IAI47_03475 at 727.030 kb on - strand, within IAI47_03475 at 727.032 kb on + strand, within IAI47_03475 at 727.032 kb on + strand, within IAI47_03475 at 727.032 kb on + strand, within IAI47_03475 at 727.032 kb on + strand, within IAI47_03475 at 727.032 kb on + strand, within IAI47_03475 at 727.032 kb on + strand, within IAI47_03475 at 727.033 kb on - strand, within IAI47_03475 at 727.059 kb on + strand, within IAI47_03475 at 727.059 kb on + strand, within IAI47_03475 at 727.059 kb on + strand, within IAI47_03475 at 727.059 kb on + strand, within IAI47_03475 at 727.059 kb on + strand, within IAI47_03475 at 727.059 kb on + strand, within IAI47_03475 at 727.060 kb on - strand, within IAI47_03475 at 727.060 kb on - strand, within IAI47_03475 at 727.101 kb on - strand, within IAI47_03475 at 727.101 kb on - strand, within IAI47_03475 at 727.101 kb on - strand, within IAI47_03475 at 727.107 kb on + strand, within IAI47_03475 at 727.108 kb on - strand, within IAI47_03475 at 727.108 kb on - strand, within IAI47_03475 at 727.108 kb on - strand, within IAI47_03475 at 727.113 kb on + strand, within IAI47_03475 at 727.113 kb on + strand, within IAI47_03475 at 727.137 kb on + strand, within IAI47_03475 at 727.137 kb on + strand, within IAI47_03475 at 727.138 kb on - strand, within IAI47_03475 at 727.138 kb on - strand, within IAI47_03475 at 727.245 kb on + strand, within IAI47_03475 at 727.245 kb on + strand, within IAI47_03475 at 727.246 kb on - strand, within IAI47_03475 at 727.246 kb on - strand, within IAI47_03475 at 727.262 kb on - strand, within IAI47_03475 at 727.262 kb on - strand, within IAI47_03475 at 727.262 kb on - strand, within IAI47_03475 at 727.262 kb on - strand, within IAI47_03475 at 727.262 kb on - strand, within IAI47_03475 at 727.338 kb on + strand, within IAI47_03475 at 727.338 kb on + strand, within IAI47_03475 at 727.352 kb on + strand, within IAI47_03475 at 727.395 kb on + strand, within IAI47_03475 at 727.396 kb on - strand, within IAI47_03475 at 727.396 kb on - strand, within IAI47_03475 at 727.408 kb on - strand at 727.420 kb on - strand at 727.438 kb on + strand at 727.438 kb on + strand at 727.439 kb on - strand at 727.453 kb on + strand at 727.454 kb on - strand at 727.454 kb on - strand at 727.454 kb on - strand at 727.454 kb on - strand at 727.456 kb on + strand at 727.456 kb on + strand at 727.456 kb on + strand at 727.456 kb on + strand at 727.456 kb on + strand at 727.456 kb on + strand at 727.456 kb on + strand at 727.457 kb on - strand at 727.457 kb on - strand at 727.457 kb on - strand at 727.457 kb on - strand at 727.457 kb on - strand at 727.492 kb on + strand at 727.493 kb on - strand at 727.493 kb on - strand at 727.493 kb on - strand at 727.493 kb on - strand at 727.493 kb on - strand at 727.498 kb on - strand at 727.501 kb on + strand at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.589 kb on - strand, within IAI47_03480 at 727.589 kb on - strand, within IAI47_03480 at 727.589 kb on - strand, within IAI47_03480 at 727.589 kb on - strand, within IAI47_03480 at 727.592 kb on + strand, within IAI47_03480 at 727.592 kb on + strand, within IAI47_03480 at 727.592 kb on + strand, within IAI47_03480 at 727.593 kb on - strand, within IAI47_03480 at 727.661 kb on - strand at 727.666 kb on + strand at 727.667 kb on - strand at 727.667 kb on - strand at 727.667 kb on - strand at 727.673 kb on + strand at 727.673 kb on + strand at 727.673 kb on + strand at 727.673 kb on + strand at 727.673 kb on + strand at 727.674 kb on - strand at 727.674 kb on - strand at 727.674 kb on - strand at 727.674 kb on - strand at 727.674 kb on - strand at 727.674 kb on - strand at 727.754 kb on + strand at 727.761 kb on + strand at 727.810 kb on - strand at 727.810 kb on - strand at 727.820 kb on + strand at 727.821 kb on - strand at 727.821 kb on - strand at 727.835 kb on + strand at 727.835 kb on + strand at 727.835 kb on + strand at 727.836 kb on - strand at 727.842 kb on + strand at 727.852 kb on + strand at 727.856 kb on + strand at 727.856 kb on + strand at 727.871 kb on - strand at 727.883 kb on - strand at 727.883 kb on - strand at 727.911 kb on + strand at 727.969 kb on - strand at 727.969 kb on - strand at 727.969 kb on - strand at 727.971 kb on - strand at 727.975 kb on - strand at 727.975 kb on - strand at 728.002 kb on + strand, within IAI47_03485 at 728.062 kb on + strand, within IAI47_03485 at 728.062 kb on + strand, within IAI47_03485 at 728.062 kb on + strand, within IAI47_03485 at 728.062 kb on + strand, within IAI47_03485 at 728.063 kb on - strand, within IAI47_03485 at 728.063 kb on - strand, within IAI47_03485 at 728.063 kb on - strand, within IAI47_03485 at 728.129 kb on - strand, within IAI47_03485 at 728.154 kb on + strand, within IAI47_03485 at 728.154 kb on + strand, within IAI47_03485 at 728.220 kb on + strand, within IAI47_03485 at 728.221 kb on - strand, within IAI47_03485 at 728.221 kb on - strand, within IAI47_03485 at 728.346 kb on + strand, within IAI47_03485 at 728.346 kb on + strand, within IAI47_03485 at 728.347 kb on - strand, within IAI47_03485 at 728.347 kb on - strand, within IAI47_03485 at 728.359 kb on + strand, within IAI47_03485 at 728.359 kb on + strand, within IAI47_03485 at 728.359 kb on + strand, within IAI47_03485 at 728.360 kb on - strand, within IAI47_03485 at 728.360 kb on - strand, within IAI47_03485 at 728.444 kb on + strand, within IAI47_03485 at 728.445 kb on - strand, within IAI47_03485 at 728.445 kb on - strand, within IAI47_03485 at 728.456 kb on - strand, within IAI47_03485 at 728.521 kb on + strand, within IAI47_03485 at 728.522 kb on - strand, within IAI47_03485 at 728.575 kb on + strand, within IAI47_03485 at 728.576 kb on - strand, within IAI47_03485 at 728.622 kb on + strand, within IAI47_03485 at 728.631 kb on + strand, within IAI47_03485 at 728.631 kb on + strand, within IAI47_03485 at 728.632 kb on - strand, within IAI47_03485 at 728.635 kb on + strand, within IAI47_03485 at 728.635 kb on + strand, within IAI47_03485 at 728.635 kb on + strand, within IAI47_03485 at 728.635 kb on + strand, within IAI47_03485 at 728.636 kb on - strand, within IAI47_03485 at 728.636 kb on - strand, within IAI47_03485 at 728.636 kb on - strand, within IAI47_03485 at 728.636 kb on - strand, within IAI47_03485 at 728.636 kb on - strand, within IAI47_03485 at 728.636 kb on - strand, within IAI47_03485 at 728.636 kb on - strand, within IAI47_03485 at 728.638 kb on + strand, within IAI47_03485 at 728.638 kb on + strand, within IAI47_03485 at 728.663 kb on + strand, within IAI47_03485 at 728.761 kb on + strand at 728.798 kb on + strand at 728.798 kb on + strand at 728.805 kb on + strand at 728.805 kb on + strand at 728.805 kb on + strand at 728.806 kb on - strand at 728.850 kb on - strand at 728.850 kb on - strand at 728.850 kb on - strand at 728.850 kb on - strand at 728.868 kb on - strand at 728.894 kb on - strand at 728.894 kb on - strand at 728.977 kb on + strand at 728.977 kb on + strand at 728.977 kb on + strand at 728.977 kb on + strand at 728.977 kb on + strand at 728.977 kb on + strand at 728.978 kb on - strand at 728.978 kb on - strand at 728.978 kb on - strand at 728.981 kb on + strand at 728.982 kb on - strand at 728.982 kb on - strand at 728.982 kb on - strand at 728.982 kb on - strand at 728.982 kb on - strand at 728.992 kb on + strand at 729.023 kb on + strand, within IAI47_03490 at 729.023 kb on + strand, within IAI47_03490 at 729.024 kb on - strand, within IAI47_03490 at 729.024 kb on - strand, within IAI47_03490 at 729.024 kb on - strand, within IAI47_03490 at 729.140 kb on + strand, within IAI47_03490 at 729.141 kb on - strand, within IAI47_03490 at 729.174 kb on + strand at 729.175 kb on - strand at 729.175 kb on - strand at 729.175 kb on - strand at 729.175 kb on - strand at 729.184 kb on + strand at 729.185 kb on - strand at 729.240 kb on + strand at 729.241 kb on - strand at 729.241 kb on - strand at 729.241 kb on - strand at 729.241 kb on - strand at 729.241 kb on - strand at 729.241 kb on - strand at 729.259 kb on + strand at 729.273 kb on + strand at 729.273 kb on + strand at 729.273 kb on + strand at 729.273 kb on + strand at 729.273 kb on + strand at 729.273 kb on + strand at 729.273 kb on + strand at 729.273 kb on + strand at 729.273 kb on + strand at 729.273 kb on + strand at 729.273 kb on + strand at 729.273 kb on + strand at 729.274 kb on - strand at 729.274 kb on - strand at 729.274 kb on - strand at 729.274 kb on - strand at 729.274 kb on - strand at 729.316 kb on + strand at 729.316 kb on + strand at 729.342 kb on - strand at 729.343 kb on + strand at 729.348 kb on + strand at 729.348 kb on + strand at 729.349 kb on - strand at 729.389 kb on + strand at 729.390 kb on - strand at 729.390 kb on - strand at 729.478 kb on + strand at 729.478 kb on + strand at 729.479 kb on - strand at 729.479 kb on - strand at 729.479 kb on - strand at 729.479 kb on - strand at 729.479 kb on - strand at 729.479 kb on - strand at 729.479 kb on - strand at 729.479 kb on - strand at 729.479 kb on - strand at 729.493 kb on + strand at 729.493 kb on + strand at 729.493 kb on + strand at 729.494 kb on - strand at 729.494 kb on - strand at 729.494 kb on - strand at 729.511 kb on + strand at 729.511 kb on + strand at 729.512 kb on - strand at 729.512 kb on - strand at 729.512 kb on - strand at 729.512 kb on - strand at 729.559 kb on + strand at 729.559 kb on + strand at 729.574 kb on + strand at 729.574 kb on + strand at 729.574 kb on + strand at 729.580 kb on + strand, within IAI47_03495 at 729.580 kb on + strand, within IAI47_03495 at 729.606 kb on + strand, within IAI47_03495 at 729.606 kb on + strand, within IAI47_03495 at 729.606 kb on + strand, within IAI47_03495 at 729.606 kb on + strand, within IAI47_03495 at 729.607 kb on - strand, within IAI47_03495 at 729.607 kb on - strand, within IAI47_03495 at 729.607 kb on - strand, within IAI47_03495 at 729.607 kb on - strand, within IAI47_03495 at 729.607 kb on - strand, within IAI47_03495 at 729.637 kb on + strand, within IAI47_03495 at 729.637 kb on + strand, within IAI47_03495 at 729.637 kb on + strand, within IAI47_03495 at 729.637 kb on + strand, within IAI47_03495 at 729.637 kb on + strand, within IAI47_03495 at 729.637 kb on + strand, within IAI47_03495 at 729.637 kb on + strand, within IAI47_03495 at 729.637 kb on + strand, within IAI47_03495 at 729.638 kb on - strand, within IAI47_03495 at 729.670 kb on - strand, within IAI47_03495 at 729.670 kb on - strand, within IAI47_03495 at 729.670 kb on - strand, within IAI47_03495
Per-strain Table
Position Strand Gene LocusTag Fraction Defined media control, anaerobic remove 727,003 + IAI47_03475 0.50 -1.3 727,004 - IAI47_03475 0.51 +0.8 727,029 + IAI47_03475 0.53 +0.0 727,029 + IAI47_03475 0.53 -1.6 727,029 + IAI47_03475 0.53 +0.5 727,030 - IAI47_03475 0.53 -0.6 727,030 - IAI47_03475 0.53 +1.3 727,030 - IAI47_03475 0.53 +1.1 727,030 - IAI47_03475 0.53 -1.6 727,030 - IAI47_03475 0.53 +0.0 727,032 + IAI47_03475 0.53 +0.6 727,032 + IAI47_03475 0.53 -0.4 727,032 + IAI47_03475 0.53 -1.8 727,032 + IAI47_03475 0.53 -0.3 727,032 + IAI47_03475 0.53 -1.0 727,032 + IAI47_03475 0.53 +1.4 727,033 - IAI47_03475 0.53 +2.3 727,059 + IAI47_03475 0.56 +0.1 727,059 + IAI47_03475 0.56 -0.2 727,059 + IAI47_03475 0.56 +0.4 727,059 + IAI47_03475 0.56 -0.1 727,059 + IAI47_03475 0.56 +1.4 727,059 + IAI47_03475 0.56 +0.0 727,060 - IAI47_03475 0.56 +0.9 727,060 - IAI47_03475 0.56 -1.2 727,101 - IAI47_03475 0.60 -1.6 727,101 - IAI47_03475 0.60 -1.8 727,101 - IAI47_03475 0.60 +4.1 727,107 + IAI47_03475 0.61 +1.2 727,108 - IAI47_03475 0.61 -0.6 727,108 - IAI47_03475 0.61 -0.4 727,108 - IAI47_03475 0.61 -0.1 727,113 + IAI47_03475 0.61 -0.4 727,113 + IAI47_03475 0.61 -1.8 727,137 + IAI47_03475 0.64 -1.4 727,137 + IAI47_03475 0.64 -4.2 727,138 - IAI47_03475 0.64 -0.2 727,138 - IAI47_03475 0.64 +0.2 727,245 + IAI47_03475 0.75 -0.9 727,245 + IAI47_03475 0.75 +1.3 727,246 - IAI47_03475 0.75 +0.0 727,246 - IAI47_03475 0.75 -1.0 727,262 - IAI47_03475 0.76 -2.0 727,262 - IAI47_03475 0.76 -2.0 727,262 - IAI47_03475 0.76 +1.8 727,262 - IAI47_03475 0.76 -1.3 727,262 - IAI47_03475 0.76 -2.4 727,338 + IAI47_03475 0.84 +1.2 727,338 + IAI47_03475 0.84 -0.1 727,352 + IAI47_03475 0.85 +1.1 727,395 + IAI47_03475 0.89 +2.0 727,396 - IAI47_03475 0.90 -0.1 727,396 - IAI47_03475 0.90 -1.0 727,408 - +3.6 727,420 - -3.3 727,438 + -1.3 727,438 + +0.4 727,439 - -1.6 727,453 + +0.5 727,454 - -0.4 727,454 - -0.3 727,454 - -0.0 727,454 - -0.8 727,456 + -0.4 727,456 + -1.3 727,456 + +1.3 727,456 + -0.9 727,456 + +0.5 727,456 + +0.8 727,456 + +0.8 727,457 - +0.8 727,457 - +0.1 727,457 - +1.4 727,457 - +0.5 727,457 - -0.3 727,492 + +0.3 727,493 - +0.7 727,493 - +1.8 727,493 - +1.7 727,493 - +0.2 727,493 - -1.4 727,498 - -0.1 727,501 + +0.3 727,588 + IAI47_03480 0.49 +1.4 727,588 + IAI47_03480 0.49 +1.7 727,588 + IAI47_03480 0.49 +0.5 727,588 + IAI47_03480 0.49 -0.1 727,588 + IAI47_03480 0.49 -1.1 727,588 + IAI47_03480 0.49 -0.4 727,588 + IAI47_03480 0.49 +0.8 727,588 + IAI47_03480 0.49 +1.0 727,589 - IAI47_03480 0.50 -0.2 727,589 - IAI47_03480 0.50 +1.0 727,589 - IAI47_03480 0.50 +2.3 727,589 - IAI47_03480 0.50 -0.0 727,592 + IAI47_03480 0.52 +1.1 727,592 + IAI47_03480 0.52 -0.9 727,592 + IAI47_03480 0.52 +2.2 727,593 - IAI47_03480 0.52 +0.6 727,661 - -1.6 727,666 + -1.5 727,667 - -0.9 727,667 - +0.3 727,667 - +0.4 727,673 + +0.7 727,673 + +0.7 727,673 + -0.4 727,673 + +0.4 727,673 + +2.6 727,674 - +1.2 727,674 - +1.6 727,674 - +0.2 727,674 - +0.4 727,674 - +0.5 727,674 - -0.2 727,754 + -2.3 727,761 + -0.3 727,810 - -1.3 727,810 - +0.5 727,820 + +1.4 727,821 - -1.4 727,821 - +0.7 727,835 + -0.9 727,835 + +1.6 727,835 + -0.2 727,836 - -2.4 727,842 + -0.4 727,852 + -1.8 727,856 + +1.3 727,856 + -0.2 727,871 - -0.8 727,883 - -1.0 727,883 - -2.3 727,911 + -1.7 727,969 - -1.7 727,969 - +0.1 727,969 - -0.6 727,971 - -0.2 727,975 - +0.9 727,975 - -0.5 728,002 + IAI47_03485 0.12 +0.5 728,062 + IAI47_03485 0.19 -1.4 728,062 + IAI47_03485 0.19 +3.2 728,062 + IAI47_03485 0.19 -0.2 728,062 + IAI47_03485 0.19 +1.0 728,063 - IAI47_03485 0.19 -0.4 728,063 - IAI47_03485 0.19 -1.3 728,063 - IAI47_03485 0.19 +0.3 728,129 - IAI47_03485 0.27 +0.6 728,154 + IAI47_03485 0.30 +0.6 728,154 + IAI47_03485 0.30 -0.7 728,220 + IAI47_03485 0.37 +0.3 728,221 - IAI47_03485 0.38 +1.5 728,221 - IAI47_03485 0.38 +1.4 728,346 + IAI47_03485 0.52 +1.1 728,346 + IAI47_03485 0.52 +0.4 728,347 - IAI47_03485 0.52 -1.1 728,347 - IAI47_03485 0.52 -1.2 728,359 + IAI47_03485 0.53 -0.4 728,359 + IAI47_03485 0.53 +1.0 728,359 + IAI47_03485 0.53 +1.4 728,360 - IAI47_03485 0.54 -0.5 728,360 - IAI47_03485 0.54 +1.2 728,444 + IAI47_03485 0.63 +0.9 728,445 - IAI47_03485 0.63 +1.8 728,445 - IAI47_03485 0.63 +1.9 728,456 - IAI47_03485 0.65 +1.7 728,521 + IAI47_03485 0.72 +1.0 728,522 - IAI47_03485 0.72 -0.8 728,575 + IAI47_03485 0.78 +1.1 728,576 - IAI47_03485 0.78 +0.1 728,622 + IAI47_03485 0.84 +1.2 728,631 + IAI47_03485 0.85 +0.6 728,631 + IAI47_03485 0.85 +2.0 728,632 - IAI47_03485 0.85 +0.8 728,635 + IAI47_03485 0.85 -0.2 728,635 + IAI47_03485 0.85 +0.8 728,635 + IAI47_03485 0.85 -0.3 728,635 + IAI47_03485 0.85 -1.2 728,636 - IAI47_03485 0.85 -0.5 728,636 - IAI47_03485 0.85 +0.2 728,636 - IAI47_03485 0.85 +1.6 728,636 - IAI47_03485 0.85 -0.1 728,636 - IAI47_03485 0.85 +0.3 728,636 - IAI47_03485 0.85 -0.9 728,636 - IAI47_03485 0.85 +1.0 728,638 + IAI47_03485 0.86 +1.0 728,638 + IAI47_03485 0.86 -0.8 728,663 + IAI47_03485 0.88 +0.1 728,761 + -0.5 728,798 + -0.4 728,798 + +0.9 728,805 + -0.2 728,805 + -1.5 728,805 + -1.3 728,806 - -0.3 728,850 - +0.2 728,850 - -0.2 728,850 - -0.1 728,850 - +0.3 728,868 - +1.5 728,894 - -1.0 728,894 - -0.4 728,977 + -0.6 728,977 + -1.1 728,977 + -0.3 728,977 + -0.3 728,977 + +0.6 728,977 + -0.1 728,978 - -1.2 728,978 - -1.4 728,978 - +0.7 728,981 + -1.2 728,982 - -0.6 728,982 - +1.9 728,982 - -0.5 728,982 - -0.6 728,982 - -0.2 728,992 + +0.1 729,023 + IAI47_03490 0.21 -0.1 729,023 + IAI47_03490 0.21 -0.4 729,024 - IAI47_03490 0.22 +0.4 729,024 - IAI47_03490 0.22 +0.5 729,024 - IAI47_03490 0.22 -1.3 729,140 + IAI47_03490 0.81 -0.8 729,141 - IAI47_03490 0.82 -1.8 729,174 + +2.0 729,175 - +0.1 729,175 - -0.7 729,175 - -0.9 729,175 - +0.3 729,184 + -2.8 729,185 - +1.0 729,240 + +0.3 729,241 - +0.3 729,241 - +0.2 729,241 - +0.8 729,241 - -1.2 729,241 - -0.2 729,241 - -0.3 729,259 + +4.4 729,273 + +1.4 729,273 + -0.9 729,273 + -0.2 729,273 + -0.2 729,273 + +0.0 729,273 + +0.6 729,273 + +4.0 729,273 + -0.4 729,273 + -0.2 729,273 + -0.6 729,273 + +0.6 729,273 + +0.3 729,274 - +0.5 729,274 - -0.8 729,274 - -2.1 729,274 - -1.1 729,274 - +0.9 729,316 + +0.8 729,316 + -0.7 729,342 - 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IAI47_03495 0.18 -0.5 729,670 - IAI47_03495 0.22 +0.5 729,670 - IAI47_03495 0.22 -3.5 729,670 - IAI47_03495 0.22 +2.2
Or see this region's nucleotide sequence