Experiment: Defined media control, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03105 and IAI47_03110 are separated by 43 nucleotides IAI47_03110 and IAI47_03115 are separated by 438 nucleotides IAI47_03115 and IAI47_03120 are separated by 235 nucleotides
IAI47_03105: IAI47_03105 - bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE, at 643,415 to 644,839
_03105
IAI47_03110: IAI47_03110 - accessory factor UbiK family protein, at 644,883 to 645,269
_03110
IAI47_03115: IAI47_03115 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 645,708 to 646,364
_03115
IAI47_03120: IAI47_03120 - 4,5-DOPA dioxygenase extradiol, at 646,600 to 647,385
_03120
Position (kb) 645
646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 644.850 kb on + strand at 644.850 kb on + strand at 644.850 kb on + strand at 644.851 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.892 kb on - strand at 644.892 kb on - strand at 644.892 kb on - strand at 645.285 kb on - strand at 645.307 kb on + strand at 645.308 kb on - strand at 645.308 kb on - strand at 645.308 kb on - strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.353 kb on - strand at 645.396 kb on + strand at 645.428 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 646.362 kb on + strand at 646.362 kb on + strand at 646.362 kb on + strand at 646.380 kb on + strand at 646.381 kb on - strand at 646.435 kb on + strand at 646.435 kb on + strand at 646.436 kb on - strand at 646.436 kb on - strand at 646.466 kb on + strand at 646.466 kb on + strand at 646.467 kb on - strand at 646.467 kb on - strand at 646.467 kb on - strand at 646.467 kb on - strand at 646.470 kb on + strand at 646.470 kb on + strand at 646.470 kb on + strand at 646.470 kb on + strand at 646.486 kb on + strand at 646.486 kb on + strand at 646.487 kb on - strand at 646.530 kb on + strand at 646.530 kb on + strand at 646.531 kb on - strand at 646.531 kb on - strand at 646.531 kb on - strand at 646.541 kb on + strand at 646.560 kb on - strand at 646.564 kb on + strand at 646.564 kb on + strand at 646.610 kb on + strand at 646.610 kb on + strand at 646.610 kb on + strand at 646.610 kb on + strand at 646.611 kb on - strand at 646.611 kb on - strand at 646.611 kb on - strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.672 kb on + strand at 646.672 kb on + strand at 646.672 kb on + strand at 646.672 kb on + strand at 646.672 kb on + strand at 646.673 kb on - strand at 646.675 kb on - strand at 646.725 kb on + strand, within IAI47_03120 at 646.747 kb on + strand, within IAI47_03120 at 646.747 kb on + strand, within IAI47_03120 at 646.747 kb on + strand, within IAI47_03120 at 646.747 kb on + strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.750 kb on - strand, within IAI47_03120 at 646.750 kb on - strand, within IAI47_03120 at 646.785 kb on + strand, within IAI47_03120 at 646.786 kb on - strand, within IAI47_03120 at 646.786 kb on - strand, within IAI47_03120 at 646.838 kb on - strand, within IAI47_03120 at 646.886 kb on + strand, within IAI47_03120 at 646.886 kb on + strand, within IAI47_03120 at 646.886 kb on + strand, within IAI47_03120 at 646.887 kb on - strand, within IAI47_03120 at 646.887 kb on - strand, within IAI47_03120 at 646.901 kb on + strand, within IAI47_03120 at 646.901 kb on + strand, within IAI47_03120 at 646.901 kb on + strand, within IAI47_03120 at 646.901 kb on + strand, within IAI47_03120 at 646.902 kb on - strand, within IAI47_03120 at 646.902 kb on - strand, within IAI47_03120 at 646.902 kb on - strand, within IAI47_03120 at 646.960 kb on + strand, within IAI47_03120 at 646.960 kb on + strand, within IAI47_03120 at 646.960 kb on + strand, within IAI47_03120 at 646.961 kb on - strand, within IAI47_03120 at 646.961 kb on - strand, within IAI47_03120 at 646.961 kb on - strand, within IAI47_03120 at 646.991 kb on + strand, within IAI47_03120 at 646.991 kb on + strand, within IAI47_03120 at 646.991 kb on + strand, within IAI47_03120 at 646.991 kb on + strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 647.007 kb on + strand, within IAI47_03120 at 647.100 kb on + strand, within IAI47_03120 at 647.100 kb on + strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.109 kb on + strand, within IAI47_03120 at 647.140 kb on + strand, within IAI47_03120 at 647.140 kb on + strand, within IAI47_03120 at 647.141 kb on - strand, within IAI47_03120 at 647.226 kb on + strand, within IAI47_03120 at 647.226 kb on + strand, within IAI47_03120 at 647.226 kb on + strand, within IAI47_03120 at 647.227 kb on - strand, within IAI47_03120 at 647.253 kb on + strand, within IAI47_03120 at 647.253 kb on + strand, within IAI47_03120 at 647.272 kb on + strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.287 kb on + strand, within IAI47_03120 at 647.287 kb on + strand, within IAI47_03120 at 647.287 kb on + strand, within IAI47_03120 at 647.287 kb on + strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120
Per-strain Table
Position Strand Gene LocusTag Fraction Defined media control, anaerobic remove 644,850 + +0.4 644,850 + -0.5 644,850 + +0.5 644,851 - +0.3 644,882 - -0.2 644,882 - +0.4 644,882 - +1.7 644,882 - +1.5 644,882 - -0.1 644,882 - -1.0 644,882 - -1.4 644,884 + +1.4 644,884 + +0.9 644,884 + +1.5 644,884 + -1.3 644,884 + -0.7 644,885 - +0.3 644,885 - +1.6 644,885 - +1.5 644,885 - -0.5 644,885 - +1.8 644,885 - -1.9 644,885 - -0.1 644,891 + -3.0 644,891 + -0.3 644,891 + -0.4 644,891 + +1.3 644,892 - -2.5 644,892 - -0.9 644,892 - +0.6 645,285 - -0.8 645,307 + +1.1 645,308 - -2.2 645,308 - -1.7 645,308 - -0.8 645,315 + +0.1 645,315 + -2.6 645,315 + +1.4 645,315 + +0.6 645,315 + -1.8 645,315 + -0.3 645,316 - +0.1 645,316 - +0.2 645,316 - -0.2 645,316 - -0.7 645,316 - -1.2 645,318 + -0.6 645,318 + +1.7 645,318 + +0.1 645,318 + +0.7 645,318 + -0.8 645,319 - -0.7 645,319 - +1.0 645,319 - -1.8 645,319 - +0.1 645,325 + +0.8 645,325 + +0.5 645,325 + +0.9 645,325 + -0.9 645,326 - +1.6 645,326 - -0.1 645,326 - +0.0 645,326 - -0.9 645,331 + +2.1 645,331 + -0.2 645,331 + +0.7 645,331 + -0.9 645,331 + +0.4 645,331 + -0.4 645,331 + -1.1 645,332 - +0.3 645,332 - -3.0 645,332 - +0.8 645,332 - +0.3 645,353 - +0.1 645,396 + -0.8 645,428 + +0.9 645,430 + -0.3 645,430 + +0.7 645,430 + -0.4 645,430 + +0.5 645,430 + -1.2 645,658 + -1.7 645,658 + -0.2 645,658 + +1.5 645,658 + -3.2 646,362 + +0.3 646,362 + +0.4 646,362 + +1.7 646,380 + -0.2 646,381 - -1.1 646,435 + +0.5 646,435 + -1.0 646,436 - -0.8 646,436 - +0.4 646,466 + -1.6 646,466 + +1.2 646,467 - +1.3 646,467 - -1.1 646,467 - -0.9 646,467 - -1.1 646,470 + +0.5 646,470 + -0.1 646,470 + -0.3 646,470 + +0.7 646,486 + +0.3 646,486 + -0.0 646,487 - -0.5 646,530 + +2.3 646,530 + -1.6 646,531 - -0.0 646,531 - +0.4 646,531 - -1.5 646,541 + +0.3 646,560 - +0.5 646,564 + +0.3 646,564 + +0.8 646,610 + +0.7 646,610 + +1.0 646,610 + -0.3 646,610 + -0.1 646,611 - -0.1 646,611 - -0.6 646,611 - -1.7 646,614 + +0.1 646,614 + +1.3 646,614 + +1.2 646,614 + -0.7 646,614 + -0.0 646,614 + -1.3 646,615 - -1.2 646,615 - +0.9 646,615 - +0.7 646,615 - -0.7 646,615 - -0.6 646,615 - -1.2 646,672 + -0.2 646,672 + +2.2 646,672 + +0.4 646,672 + +1.1 646,672 + +0.4 646,673 - -1.2 646,675 - -0.9 646,725 + IAI47_03120 0.16 +0.6 646,747 + IAI47_03120 0.19 +0.4 646,747 + IAI47_03120 0.19 -0.5 646,747 + IAI47_03120 0.19 -1.2 646,747 + IAI47_03120 0.19 -0.8 646,748 - IAI47_03120 0.19 +0.7 646,748 - IAI47_03120 0.19 +2.0 646,748 - IAI47_03120 0.19 -0.2 646,748 - IAI47_03120 0.19 +0.2 646,748 - IAI47_03120 0.19 +3.3 646,749 + IAI47_03120 0.19 +1.0 646,749 + IAI47_03120 0.19 -0.9 646,749 + IAI47_03120 0.19 +0.4 646,749 + IAI47_03120 0.19 +0.2 646,749 + IAI47_03120 0.19 +0.8 646,750 - IAI47_03120 0.19 +1.9 646,750 - IAI47_03120 0.19 -1.0 646,785 + IAI47_03120 0.24 +2.1 646,786 - IAI47_03120 0.24 +1.3 646,786 - IAI47_03120 0.24 -0.9 646,838 - IAI47_03120 0.30 -1.9 646,886 + IAI47_03120 0.36 -0.9 646,886 + IAI47_03120 0.36 -2.1 646,886 + IAI47_03120 0.36 -1.1 646,887 - IAI47_03120 0.37 -1.5 646,887 - IAI47_03120 0.37 +1.1 646,901 + IAI47_03120 0.38 +2.6 646,901 + IAI47_03120 0.38 -2.4 646,901 + IAI47_03120 0.38 +1.5 646,901 + IAI47_03120 0.38 -1.1 646,902 - IAI47_03120 0.38 +1.2 646,902 - IAI47_03120 0.38 -0.7 646,902 - IAI47_03120 0.38 -0.1 646,960 + IAI47_03120 0.46 +1.2 646,960 + IAI47_03120 0.46 -0.9 646,960 + IAI47_03120 0.46 -0.6 646,961 - IAI47_03120 0.46 -2.3 646,961 - IAI47_03120 0.46 +0.1 646,961 - IAI47_03120 0.46 +1.4 646,991 + IAI47_03120 0.50 +1.7 646,991 + IAI47_03120 0.50 -1.2 646,991 + IAI47_03120 0.50 -0.1 646,991 + IAI47_03120 0.50 -1.5 646,992 - IAI47_03120 0.50 -0.5 646,992 - IAI47_03120 0.50 -2.7 646,992 - IAI47_03120 0.50 +0.3 646,992 - IAI47_03120 0.50 +0.9 646,992 - IAI47_03120 0.50 +1.3 647,007 + IAI47_03120 0.52 -0.2 647,100 + IAI47_03120 0.64 -0.5 647,100 + IAI47_03120 0.64 -1.2 647,101 - IAI47_03120 0.64 -0.8 647,101 - IAI47_03120 0.64 +0.5 647,101 - IAI47_03120 0.64 -0.4 647,101 - IAI47_03120 0.64 +1.8 647,101 - IAI47_03120 0.64 -0.6 647,109 + IAI47_03120 0.65 +1.5 647,140 + IAI47_03120 0.69 +0.5 647,140 + IAI47_03120 0.69 +1.1 647,141 - IAI47_03120 0.69 +3.2 647,226 + IAI47_03120 0.80 -0.4 647,226 + IAI47_03120 0.80 -0.1 647,226 + IAI47_03120 0.80 +1.1 647,227 - IAI47_03120 0.80 -0.3 647,253 + IAI47_03120 0.83 -2.1 647,253 + IAI47_03120 0.83 -3.1 647,272 + IAI47_03120 0.85 -1.7 647,273 - IAI47_03120 0.86 +0.8 647,273 - IAI47_03120 0.86 -1.8 647,273 - IAI47_03120 0.86 +1.6 647,273 - IAI47_03120 0.86 +0.7 647,273 - IAI47_03120 0.86 +1.5 647,287 + IAI47_03120 0.87 +1.4 647,287 + IAI47_03120 0.87 -1.0 647,287 + IAI47_03120 0.87 +0.3 647,287 + IAI47_03120 0.87 -0.9 647,288 - IAI47_03120 0.88 -0.5 647,288 - IAI47_03120 0.88 +0.6 647,288 - IAI47_03120 0.88 +1.4 647,288 - IAI47_03120 0.88 -0.2 647,288 - IAI47_03120 0.88 -2.0 647,288 - IAI47_03120 0.88 +0.4 647,288 - IAI47_03120 0.88 +0.6
Or see this region's nucleotide sequence