Experiment: Lomefloxacin 0.012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23705 and HSERO_RS23710 are separated by 243 nucleotides HSERO_RS23710 and HSERO_RS23715 are separated by 52 nucleotides HSERO_RS23715 and HSERO_RS23720 overlap by 11 nucleotides
HSERO_RS23705: HSERO_RS23705 - hydrogenase, at 5,434,091 to 5,434,429
_RS23705
HSERO_RS23710: HSERO_RS23710 - response regulator GlrR, at 5,434,673 to 5,436,055
_RS23710
HSERO_RS23715: HSERO_RS23715 - hypothetical protein, at 5,436,108 to 5,436,608
_RS23715
HSERO_RS23720: HSERO_RS23720 - histidine kinase, at 5,436,598 to 5,438,076
_RS23720
Position (kb) 5434
5435
5436
5437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5433.946 kb on + strand at 5434.023 kb on - strand at 5434.036 kb on - strand at 5434.079 kb on + strand at 5434.088 kb on + strand at 5434.092 kb on - strand at 5434.106 kb on - strand at 5434.107 kb on + strand at 5434.118 kb on + strand at 5434.203 kb on - strand, within HSERO_RS23705 at 5434.209 kb on + strand, within HSERO_RS23705 at 5434.272 kb on + strand, within HSERO_RS23705 at 5434.272 kb on + strand, within HSERO_RS23705 at 5434.272 kb on + strand at 5434.280 kb on - strand, within HSERO_RS23705 at 5434.466 kb on - strand at 5434.468 kb on + strand at 5434.470 kb on + strand at 5434.473 kb on - strand at 5434.479 kb on - strand at 5434.501 kb on - strand at 5434.873 kb on + strand, within HSERO_RS23710 at 5434.917 kb on - strand, within HSERO_RS23710 at 5434.956 kb on + strand, within HSERO_RS23710 at 5435.087 kb on - strand, within HSERO_RS23710 at 5435.268 kb on - strand at 5435.307 kb on + strand, within HSERO_RS23710 at 5435.315 kb on - strand, within HSERO_RS23710 at 5435.386 kb on - strand, within HSERO_RS23710 at 5435.386 kb on - strand, within HSERO_RS23710 at 5435.722 kb on + strand, within HSERO_RS23710 at 5435.753 kb on + strand, within HSERO_RS23710 at 5435.791 kb on + strand at 5436.062 kb on + strand at 5436.186 kb on - strand, within HSERO_RS23715 at 5436.193 kb on + strand, within HSERO_RS23715 at 5436.213 kb on + strand, within HSERO_RS23715 at 5436.285 kb on - strand, within HSERO_RS23715 at 5436.311 kb on - strand, within HSERO_RS23715 at 5436.339 kb on - strand, within HSERO_RS23715 at 5436.345 kb on - strand, within HSERO_RS23715 at 5436.363 kb on + strand, within HSERO_RS23715 at 5436.376 kb on + strand, within HSERO_RS23715 at 5436.385 kb on + strand, within HSERO_RS23715 at 5436.509 kb on + strand, within HSERO_RS23715 at 5436.546 kb on + strand, within HSERO_RS23715 at 5436.653 kb on + strand at 5436.723 kb on + strand at 5436.728 kb on + strand at 5436.736 kb on - strand at 5436.738 kb on + strand at 5436.746 kb on - strand, within HSERO_RS23720 at 5436.750 kb on + strand, within HSERO_RS23720 at 5436.759 kb on - strand, within HSERO_RS23720 at 5436.851 kb on + strand, within HSERO_RS23720 at 5436.873 kb on - strand, within HSERO_RS23720 at 5436.899 kb on + strand, within HSERO_RS23720
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM remove 5,433,946 + -0.4 5,434,023 - +0.3 5,434,036 - +0.4 5,434,079 + -0.5 5,434,088 + -1.0 5,434,092 - +0.9 5,434,106 - +0.2 5,434,107 + +0.8 5,434,118 + -0.7 5,434,203 - HSERO_RS23705 0.33 -1.0 5,434,209 + HSERO_RS23705 0.35 +0.3 5,434,272 + HSERO_RS23705 0.53 -1.5 5,434,272 + HSERO_RS23705 0.53 -0.7 5,434,272 + +3.0 5,434,280 - HSERO_RS23705 0.56 -0.6 5,434,466 - +0.5 5,434,468 + +0.8 5,434,470 + +0.2 5,434,473 - +0.6 5,434,479 - +1.2 5,434,501 - -1.0 5,434,873 + HSERO_RS23710 0.14 +0.4 5,434,917 - HSERO_RS23710 0.18 +0.7 5,434,956 + HSERO_RS23710 0.20 +0.3 5,435,087 - HSERO_RS23710 0.30 -0.6 5,435,268 - +0.2 5,435,307 + HSERO_RS23710 0.46 +0.4 5,435,315 - HSERO_RS23710 0.46 -0.2 5,435,386 - HSERO_RS23710 0.52 -1.8 5,435,386 - HSERO_RS23710 0.52 +0.4 5,435,722 + HSERO_RS23710 0.76 +0.5 5,435,753 + HSERO_RS23710 0.78 +0.5 5,435,791 + +2.2 5,436,062 + -0.6 5,436,186 - HSERO_RS23715 0.16 -0.6 5,436,193 + HSERO_RS23715 0.17 -2.0 5,436,213 + HSERO_RS23715 0.21 -1.1 5,436,285 - HSERO_RS23715 0.35 +0.2 5,436,311 - HSERO_RS23715 0.41 -3.2 5,436,339 - HSERO_RS23715 0.46 -1.9 5,436,345 - HSERO_RS23715 0.47 -1.8 5,436,363 + HSERO_RS23715 0.51 -0.9 5,436,376 + HSERO_RS23715 0.53 -0.7 5,436,385 + HSERO_RS23715 0.55 +0.7 5,436,509 + HSERO_RS23715 0.80 -1.4 5,436,546 + HSERO_RS23715 0.87 -0.9 5,436,653 + -1.3 5,436,723 + -0.6 5,436,728 + +0.3 5,436,736 - -2.3 5,436,738 + -0.8 5,436,746 - HSERO_RS23720 0.10 -0.7 5,436,750 + HSERO_RS23720 0.10 +0.0 5,436,759 - HSERO_RS23720 0.11 -0.8 5,436,851 + HSERO_RS23720 0.17 -2.3 5,436,873 - HSERO_RS23720 0.19 -0.6 5,436,899 + HSERO_RS23720 0.20 -1.6
Or see this region's nucleotide sequence