Experiment: Lomefloxacin 0.012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23050 and HSERO_RS23055 are separated by 47 nucleotides HSERO_RS23055 and HSERO_RS23060 are separated by 11 nucleotides
HSERO_RS23050: HSERO_RS23050 - transporter, at 5,287,330 to 5,288,775
_RS23050
HSERO_RS23055: HSERO_RS23055 - multidrug transporter, at 5,288,823 to 5,291,978
_RS23055
HSERO_RS23060: HSERO_RS23060 - hemolysin D, at 5,291,990 to 5,293,216
_RS23060
Position (kb) 5288
5289
5290
5291
5292 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5288.035 kb on - strand, within HSERO_RS23050 at 5288.083 kb on + strand, within HSERO_RS23050 at 5288.154 kb on + strand, within HSERO_RS23050 at 5288.162 kb on - strand, within HSERO_RS23050 at 5288.380 kb on + strand, within HSERO_RS23050 at 5288.875 kb on - strand at 5289.274 kb on + strand, within HSERO_RS23055 at 5289.274 kb on + strand, within HSERO_RS23055 at 5289.373 kb on - strand, within HSERO_RS23055 at 5289.521 kb on - strand, within HSERO_RS23055 at 5289.590 kb on + strand, within HSERO_RS23055 at 5289.614 kb on + strand, within HSERO_RS23055 at 5289.812 kb on - strand, within HSERO_RS23055 at 5289.851 kb on + strand, within HSERO_RS23055 at 5289.889 kb on + strand, within HSERO_RS23055 at 5289.897 kb on - strand, within HSERO_RS23055 at 5290.003 kb on + strand, within HSERO_RS23055 at 5290.084 kb on - strand, within HSERO_RS23055 at 5290.201 kb on + strand, within HSERO_RS23055 at 5290.201 kb on + strand, within HSERO_RS23055 at 5290.209 kb on - strand, within HSERO_RS23055 at 5290.209 kb on - strand, within HSERO_RS23055 at 5290.209 kb on - strand, within HSERO_RS23055 at 5290.240 kb on - strand, within HSERO_RS23055 at 5290.294 kb on + strand, within HSERO_RS23055 at 5290.306 kb on + strand, within HSERO_RS23055 at 5290.415 kb on + strand, within HSERO_RS23055 at 5290.495 kb on - strand, within HSERO_RS23055 at 5290.770 kb on + strand, within HSERO_RS23055 at 5290.837 kb on + strand, within HSERO_RS23055 at 5290.945 kb on + strand, within HSERO_RS23055 at 5290.988 kb on - strand, within HSERO_RS23055 at 5291.079 kb on - strand, within HSERO_RS23055 at 5291.228 kb on - strand, within HSERO_RS23055 at 5291.228 kb on - strand, within HSERO_RS23055 at 5291.411 kb on + strand, within HSERO_RS23055 at 5291.503 kb on - strand, within HSERO_RS23055 at 5291.708 kb on - strand at 5291.775 kb on - strand at 5291.836 kb on - strand at 5291.926 kb on - strand at 5292.009 kb on - strand at 5292.253 kb on - strand, within HSERO_RS23060 at 5292.298 kb on + strand, within HSERO_RS23060 at 5292.510 kb on + strand, within HSERO_RS23060 at 5292.681 kb on - strand, within HSERO_RS23060 at 5292.819 kb on + strand, within HSERO_RS23060 at 5292.829 kb on + strand, within HSERO_RS23060 at 5292.940 kb on - strand, within HSERO_RS23060 at 5292.940 kb on - strand, within HSERO_RS23060
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM remove 5,288,035 - HSERO_RS23050 0.49 -1.9 5,288,083 + HSERO_RS23050 0.52 -2.0 5,288,154 + HSERO_RS23050 0.57 -0.6 5,288,162 - HSERO_RS23050 0.58 -0.2 5,288,380 + HSERO_RS23050 0.73 -1.4 5,288,875 - +0.4 5,289,274 + HSERO_RS23055 0.14 -0.2 5,289,274 + HSERO_RS23055 0.14 -1.4 5,289,373 - HSERO_RS23055 0.17 +0.1 5,289,521 - HSERO_RS23055 0.22 +0.2 5,289,590 + HSERO_RS23055 0.24 +0.1 5,289,614 + HSERO_RS23055 0.25 -0.8 5,289,812 - HSERO_RS23055 0.31 +1.0 5,289,851 + HSERO_RS23055 0.33 -1.6 5,289,889 + HSERO_RS23055 0.34 -0.5 5,289,897 - HSERO_RS23055 0.34 +0.1 5,290,003 + HSERO_RS23055 0.37 -0.4 5,290,084 - HSERO_RS23055 0.40 -3.5 5,290,201 + HSERO_RS23055 0.44 +0.3 5,290,201 + HSERO_RS23055 0.44 -0.1 5,290,209 - HSERO_RS23055 0.44 -1.7 5,290,209 - HSERO_RS23055 0.44 -1.1 5,290,209 - HSERO_RS23055 0.44 -1.1 5,290,240 - HSERO_RS23055 0.45 -2.1 5,290,294 + HSERO_RS23055 0.47 -1.0 5,290,306 + HSERO_RS23055 0.47 +0.8 5,290,415 + HSERO_RS23055 0.50 +0.7 5,290,495 - HSERO_RS23055 0.53 -0.7 5,290,770 + HSERO_RS23055 0.62 +0.2 5,290,837 + HSERO_RS23055 0.64 -0.5 5,290,945 + HSERO_RS23055 0.67 +0.3 5,290,988 - HSERO_RS23055 0.69 -0.8 5,291,079 - HSERO_RS23055 0.71 -0.8 5,291,228 - HSERO_RS23055 0.76 -1.4 5,291,228 - HSERO_RS23055 0.76 -2.5 5,291,411 + HSERO_RS23055 0.82 +0.0 5,291,503 - HSERO_RS23055 0.85 +0.7 5,291,708 - -2.1 5,291,775 - +2.1 5,291,836 - +0.2 5,291,926 - -1.8 5,292,009 - +0.3 5,292,253 - HSERO_RS23060 0.21 -1.3 5,292,298 + HSERO_RS23060 0.25 -1.1 5,292,510 + HSERO_RS23060 0.42 -0.7 5,292,681 - HSERO_RS23060 0.56 +0.3 5,292,819 + HSERO_RS23060 0.68 -0.6 5,292,829 + HSERO_RS23060 0.68 -0.4 5,292,940 - HSERO_RS23060 0.77 -0.2 5,292,940 - HSERO_RS23060 0.77 -0.0
Or see this region's nucleotide sequence