Experiment: Lomefloxacin 0.012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22900 and HSERO_RS22905 are separated by 45 nucleotides HSERO_RS22905 and HSERO_RS22910 are separated by 65 nucleotides HSERO_RS22910 and HSERO_RS22915 are separated by 300 nucleotides
HSERO_RS22900: HSERO_RS22900 - meta-pathway of phenol degradation protein, at 5,254,188 to 5,255,138
_RS22900
HSERO_RS22905: HSERO_RS22905 - 3-alpha-hydroxysteroid dehydrogenase, at 5,255,184 to 5,255,951
_RS22905
HSERO_RS22910: HSERO_RS22910 - benzaldehyde dehydrogenase, at 5,256,017 to 5,257,480
_RS22910
HSERO_RS22915: HSERO_RS22915 - Fis family transcriptional regulator, at 5,257,781 to 5,259,616
_RS22915
Position (kb) 5256
5257
5258 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5255.074 kb on + strand at 5255.102 kb on + strand at 5255.244 kb on + strand at 5255.251 kb on + strand at 5255.302 kb on + strand, within HSERO_RS22905 at 5255.340 kb on + strand, within HSERO_RS22905 at 5255.436 kb on + strand, within HSERO_RS22905 at 5255.557 kb on + strand, within HSERO_RS22905 at 5255.557 kb on + strand, within HSERO_RS22905 at 5255.557 kb on + strand, within HSERO_RS22905 at 5255.669 kb on + strand, within HSERO_RS22905 at 5255.677 kb on - strand, within HSERO_RS22905 at 5255.682 kb on - strand, within HSERO_RS22905 at 5255.736 kb on - strand, within HSERO_RS22905 at 5255.788 kb on + strand, within HSERO_RS22905 at 5255.815 kb on - strand, within HSERO_RS22905 at 5255.945 kb on + strand at 5256.023 kb on - strand at 5256.272 kb on + strand, within HSERO_RS22910 at 5256.285 kb on - strand, within HSERO_RS22910 at 5256.659 kb on + strand, within HSERO_RS22910 at 5256.678 kb on - strand, within HSERO_RS22910 at 5256.826 kb on + strand, within HSERO_RS22910 at 5256.937 kb on + strand, within HSERO_RS22910 at 5256.942 kb on + strand, within HSERO_RS22910 at 5256.950 kb on - strand, within HSERO_RS22910 at 5257.139 kb on + strand, within HSERO_RS22910 at 5257.164 kb on - strand, within HSERO_RS22910 at 5257.167 kb on + strand, within HSERO_RS22910 at 5257.175 kb on - strand, within HSERO_RS22910 at 5257.183 kb on - strand, within HSERO_RS22910 at 5257.358 kb on - strand at 5257.403 kb on - strand at 5257.491 kb on + strand at 5258.161 kb on + strand, within HSERO_RS22915 at 5258.169 kb on - strand, within HSERO_RS22915 at 5258.341 kb on - strand, within HSERO_RS22915 at 5258.387 kb on + strand, within HSERO_RS22915 at 5258.459 kb on + strand, within HSERO_RS22915 at 5258.472 kb on - strand, within HSERO_RS22915
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM remove 5,255,074 + -0.1 5,255,102 + -1.4 5,255,244 + +0.4 5,255,251 + +0.1 5,255,302 + HSERO_RS22905 0.15 +0.2 5,255,340 + HSERO_RS22905 0.20 -1.1 5,255,436 + HSERO_RS22905 0.33 -0.5 5,255,557 + HSERO_RS22905 0.49 +0.2 5,255,557 + HSERO_RS22905 0.49 +0.5 5,255,557 + HSERO_RS22905 0.49 +0.6 5,255,669 + HSERO_RS22905 0.63 -4.1 5,255,677 - HSERO_RS22905 0.64 -0.6 5,255,682 - HSERO_RS22905 0.65 -3.0 5,255,736 - HSERO_RS22905 0.72 +0.4 5,255,788 + HSERO_RS22905 0.79 -1.1 5,255,815 - HSERO_RS22905 0.82 -2.2 5,255,945 + -0.8 5,256,023 - +0.0 5,256,272 + HSERO_RS22910 0.17 -2.3 5,256,285 - HSERO_RS22910 0.18 +0.9 5,256,659 + HSERO_RS22910 0.44 -0.3 5,256,678 - HSERO_RS22910 0.45 -0.6 5,256,826 + HSERO_RS22910 0.55 -2.0 5,256,937 + HSERO_RS22910 0.63 -2.6 5,256,942 + HSERO_RS22910 0.63 -0.6 5,256,950 - HSERO_RS22910 0.64 -0.4 5,257,139 + HSERO_RS22910 0.77 -0.4 5,257,164 - HSERO_RS22910 0.78 +0.5 5,257,167 + HSERO_RS22910 0.79 +0.6 5,257,175 - HSERO_RS22910 0.79 -0.3 5,257,183 - HSERO_RS22910 0.80 +1.0 5,257,358 - -0.3 5,257,403 - +0.4 5,257,491 + -0.3 5,258,161 + HSERO_RS22915 0.21 +1.9 5,258,169 - HSERO_RS22915 0.21 +1.0 5,258,341 - HSERO_RS22915 0.31 -0.1 5,258,387 + HSERO_RS22915 0.33 +0.1 5,258,459 + HSERO_RS22915 0.37 +0.2 5,258,472 - HSERO_RS22915 0.38 -0.3
Or see this region's nucleotide sequence