Experiment: Lomefloxacin 0.012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22210 and HSERO_RS22215 are separated by 5 nucleotides HSERO_RS22215 and HSERO_RS22220 are separated by 134 nucleotides
HSERO_RS22210: HSERO_RS22210 - branched-chain amino acid ABC transporter permease, at 5,078,501 to 5,079,520
_RS22210
HSERO_RS22215: HSERO_RS22215 - branched-chain amino acid ABC transporter permease, at 5,079,526 to 5,080,497
_RS22215
HSERO_RS22220: HSERO_RS22220 - D-ribose transporter ATP-binding protein, at 5,080,632 to 5,082,146
_RS22220
Position (kb) 5079
5080
5081 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5078.612 kb on - strand, within HSERO_RS22210 at 5078.614 kb on + strand, within HSERO_RS22210 at 5078.624 kb on - strand, within HSERO_RS22210 at 5078.631 kb on + strand, within HSERO_RS22210 at 5078.837 kb on + strand, within HSERO_RS22210 at 5078.928 kb on + strand, within HSERO_RS22210 at 5078.990 kb on + strand, within HSERO_RS22210 at 5079.003 kb on - strand, within HSERO_RS22210 at 5079.046 kb on + strand, within HSERO_RS22210 at 5079.084 kb on - strand, within HSERO_RS22210 at 5079.224 kb on - strand, within HSERO_RS22210 at 5079.505 kb on + strand at 5079.818 kb on + strand, within HSERO_RS22215 at 5079.825 kb on + strand, within HSERO_RS22215 at 5079.826 kb on - strand, within HSERO_RS22215 at 5080.019 kb on - strand, within HSERO_RS22215 at 5080.441 kb on - strand at 5080.478 kb on + strand at 5080.481 kb on - strand at 5080.685 kb on - strand at 5080.698 kb on + strand at 5080.712 kb on - strand at 5080.769 kb on + strand at 5080.771 kb on + strand at 5080.895 kb on + strand, within HSERO_RS22220 at 5080.900 kb on + strand, within HSERO_RS22220 at 5081.029 kb on - strand, within HSERO_RS22220 at 5081.250 kb on - strand, within HSERO_RS22220 at 5081.475 kb on + strand, within HSERO_RS22220 at 5081.483 kb on + strand, within HSERO_RS22220
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM remove 5,078,612 - HSERO_RS22210 0.11 -0.2 5,078,614 + HSERO_RS22210 0.11 -5.0 5,078,624 - HSERO_RS22210 0.12 +0.3 5,078,631 + HSERO_RS22210 0.13 -1.1 5,078,837 + HSERO_RS22210 0.33 -0.5 5,078,928 + HSERO_RS22210 0.42 -3.4 5,078,990 + HSERO_RS22210 0.48 -2.1 5,079,003 - HSERO_RS22210 0.49 -2.4 5,079,046 + HSERO_RS22210 0.53 -4.3 5,079,084 - HSERO_RS22210 0.57 -2.0 5,079,224 - HSERO_RS22210 0.71 -0.2 5,079,505 + -1.8 5,079,818 + HSERO_RS22215 0.30 -1.1 5,079,825 + HSERO_RS22215 0.31 -1.9 5,079,826 - HSERO_RS22215 0.31 -0.9 5,080,019 - HSERO_RS22215 0.51 -2.9 5,080,441 - -0.4 5,080,478 + -1.9 5,080,481 - -1.1 5,080,685 - -1.2 5,080,698 + -1.7 5,080,712 - -2.1 5,080,769 + +0.6 5,080,771 + -1.1 5,080,895 + HSERO_RS22220 0.17 -0.3 5,080,900 + HSERO_RS22220 0.18 -2.0 5,081,029 - HSERO_RS22220 0.26 +0.2 5,081,250 - HSERO_RS22220 0.41 +0.4 5,081,475 + HSERO_RS22220 0.56 -0.0 5,081,483 + HSERO_RS22220 0.56 -1.6
Or see this region's nucleotide sequence