Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18540

Experiment: Lomefloxacin 0.012 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS18530 and HSERO_RS18535 overlap by 4 nucleotidesHSERO_RS18535 and HSERO_RS18540 overlap by 4 nucleotidesHSERO_RS18540 and HSERO_RS18545 overlap by 4 nucleotides HSERO_RS18530: HSERO_RS18530 - 3-oxoacyl-ACP synthase, at 4,252,019 to 4,253,218 _RS18530 HSERO_RS18535: HSERO_RS18535 - 3-hydroxylacyl-ACP dehydratase, at 4,253,215 to 4,253,688 _RS18535 HSERO_RS18540: HSERO_RS18540 - 3-ketoacyl-ACP reductase, at 4,253,685 to 4,254,422 _RS18540 HSERO_RS18545: HSERO_RS18545 - 3-oxoacyl-ACP synthase, at 4,254,419 to 4,255,663 _RS18545 Position (kb) 4253 4254 4255Strain fitness (log2 ratio) -2 -1 0 1 2at 4252.707 kb on - strand, within HSERO_RS18530at 4252.962 kb on - strand, within HSERO_RS18530at 4252.971 kb on + strand, within HSERO_RS18530at 4253.072 kb on + strand, within HSERO_RS18530at 4253.350 kb on + strand, within HSERO_RS18535at 4253.395 kb on - strand, within HSERO_RS18535at 4253.409 kb on - strand, within HSERO_RS18535at 4253.409 kb on - strand, within HSERO_RS18535at 4253.508 kb on - strand, within HSERO_RS18535at 4253.508 kb on - strand, within HSERO_RS18535at 4253.591 kb on + strand, within HSERO_RS18535at 4254.100 kb on + strand, within HSERO_RS18540at 4254.199 kb on + strand, within HSERO_RS18540at 4254.241 kb on + strand, within HSERO_RS18540at 4254.256 kb on + strand, within HSERO_RS18540at 4254.344 kb on + strand, within HSERO_RS18540at 4254.729 kb on - strand, within HSERO_RS18545at 4254.852 kb on - strand, within HSERO_RS18545at 4255.008 kb on + strand, within HSERO_RS18545at 4255.079 kb on + strand, within HSERO_RS18545at 4255.084 kb on + strand, within HSERO_RS18545at 4255.087 kb on - strand, within HSERO_RS18545at 4255.092 kb on - strand, within HSERO_RS18545at 4255.185 kb on - strand, within HSERO_RS18545at 4255.352 kb on + strand, within HSERO_RS18545at 4255.402 kb on + strand, within HSERO_RS18545

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM
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4,252,707 - HSERO_RS18530 0.57 -1.8
4,252,962 - HSERO_RS18530 0.79 +0.4
4,252,971 + HSERO_RS18530 0.79 +1.8
4,253,072 + HSERO_RS18530 0.88 +1.6
4,253,350 + HSERO_RS18535 0.28 +0.9
4,253,395 - HSERO_RS18535 0.38 +1.2
4,253,409 - HSERO_RS18535 0.41 +2.2
4,253,409 - HSERO_RS18535 0.41 +1.4
4,253,508 - HSERO_RS18535 0.62 -2.7
4,253,508 - HSERO_RS18535 0.62 +1.2
4,253,591 + HSERO_RS18535 0.79 -0.9
4,254,100 + HSERO_RS18540 0.56 +1.2
4,254,199 + HSERO_RS18540 0.70 +0.9
4,254,241 + HSERO_RS18540 0.75 +1.2
4,254,256 + HSERO_RS18540 0.77 +0.9
4,254,344 + HSERO_RS18540 0.89 +0.9
4,254,729 - HSERO_RS18545 0.25 +1.0
4,254,852 - HSERO_RS18545 0.35 +1.3
4,255,008 + HSERO_RS18545 0.47 +0.6
4,255,079 + HSERO_RS18545 0.53 -0.3
4,255,084 + HSERO_RS18545 0.53 -0.1
4,255,087 - HSERO_RS18545 0.54 -1.0
4,255,092 - HSERO_RS18545 0.54 -0.3
4,255,185 - HSERO_RS18545 0.62 +1.7
4,255,352 + HSERO_RS18545 0.75 -0.4
4,255,402 + HSERO_RS18545 0.79 -0.5

Or see this region's nucleotide sequence