Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14425

Experiment: Lomefloxacin 0.012 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt HSERO_RS14425: HSERO_RS14425 - hypothetical protein, at 3,267,166 to 3,267,726 _RS14425 Position (kb) 3267 3268Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3266.231 kb on - strandat 3266.231 kb on - strandat 3266.511 kb on - strandat 3266.697 kb on - strandat 3266.786 kb on + strandat 3266.791 kb on + strandat 3266.791 kb on + strandat 3266.799 kb on - strandat 3267.267 kb on + strand, within HSERO_RS14425at 3267.734 kb on + strandat 3267.766 kb on - strandat 3267.777 kb on + strandat 3267.895 kb on + strandat 3267.950 kb on - strandat 3267.985 kb on - strandat 3267.995 kb on + strandat 3268.012 kb on + strandat 3268.210 kb on - strandat 3268.317 kb on + strandat 3268.512 kb on + strandat 3268.557 kb on + strandat 3268.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM
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3,266,231 - -2.1
3,266,231 - +0.2
3,266,511 - -0.5
3,266,697 - -0.0
3,266,786 + +0.5
3,266,791 + +0.6
3,266,791 + +1.5
3,266,799 - -0.3
3,267,267 + HSERO_RS14425 0.18 -1.7
3,267,734 + -2.0
3,267,766 - -0.1
3,267,777 + -2.2
3,267,895 + -2.5
3,267,950 - +2.0
3,267,985 - -2.1
3,267,995 + -1.2
3,268,012 + -0.3
3,268,210 - +2.8
3,268,317 + -1.9
3,268,512 + -1.5
3,268,557 + +1.0
3,268,670 - -0.6

Or see this region's nucleotide sequence