Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07570

Experiment: Lomefloxacin 0.012 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS07565 and HSERO_RS07570 are separated by 89 nucleotidesHSERO_RS07570 and HSERO_RS07575 are separated by 313 nucleotidesHSERO_RS07575 and HSERO_RS07580 are separated by 71 nucleotides HSERO_RS07565: HSERO_RS07565 - acyl-CoA dehydrogenase, at 1,726,969 to 1,728,753 _RS07565 HSERO_RS07570: HSERO_RS07570 - membrane protein, at 1,728,843 to 1,729,265 _RS07570 HSERO_RS07575: HSERO_RS07575 - 30S ribosomal protein S16, at 1,729,579 to 1,729,833 _RS07575 HSERO_RS07580: HSERO_RS07580 - ribosome maturation factor RimM, at 1,729,905 to 1,730,519 _RS07580 Position (kb) 1728 1729 1730Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1727.912 kb on - strand, within HSERO_RS07565at 1727.933 kb on + strand, within HSERO_RS07565at 1728.048 kb on + strand, within HSERO_RS07565at 1728.056 kb on - strand, within HSERO_RS07565at 1728.092 kb on - strand, within HSERO_RS07565at 1728.210 kb on - strand, within HSERO_RS07565at 1728.605 kb on - strandat 1728.798 kb on + strandat 1728.810 kb on + strandat 1729.201 kb on - strand, within HSERO_RS07570

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM
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1,727,912 - HSERO_RS07565 0.53 -1.7
1,727,933 + HSERO_RS07565 0.54 +0.7
1,728,048 + HSERO_RS07565 0.60 +0.3
1,728,056 - HSERO_RS07565 0.61 -0.8
1,728,092 - HSERO_RS07565 0.63 -2.8
1,728,210 - HSERO_RS07565 0.70 +0.1
1,728,605 - -1.0
1,728,798 + +2.7
1,728,810 + -3.4
1,729,201 - HSERO_RS07570 0.85 -2.2

Or see this region's nucleotide sequence