Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06875

Experiment: Lomefloxacin 0.012 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS06870 and HSERO_RS06875 are separated by 113 nucleotidesHSERO_RS06875 and HSERO_RS06880 are separated by 78 nucleotidesHSERO_RS06880 and HSERO_RS06885 are separated by 43 nucleotides HSERO_RS06870: HSERO_RS06870 - L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) (from data), at 1,564,133 to 1,565,053 _RS06870 HSERO_RS06875: HSERO_RS06875 - LysR family transcriptional regulator, at 1,565,167 to 1,566,111 _RS06875 HSERO_RS06880: HSERO_RS06880 - transcriptional regulator, at 1,566,190 to 1,566,897 _RS06880 HSERO_RS06885: HSERO_RS06885 - transcriptional regulator, at 1,566,941 to 1,567,594 _RS06885 Position (kb) 1565 1566 1567Strain fitness (log2 ratio) -3 -2 -1 0 1at 1564.198 kb on + strandat 1564.216 kb on + strandat 1564.278 kb on - strand, within HSERO_RS06870at 1564.318 kb on - strand, within HSERO_RS06870at 1564.329 kb on + strand, within HSERO_RS06870at 1564.530 kb on - strandat 1564.530 kb on - strand, within HSERO_RS06870at 1564.790 kb on + strand, within HSERO_RS06870at 1564.793 kb on - strand, within HSERO_RS06870at 1564.839 kb on + strandat 1564.847 kb on + strand, within HSERO_RS06870at 1564.859 kb on + strand, within HSERO_RS06870at 1564.967 kb on + strandat 1565.089 kb on + strandat 1565.256 kb on + strandat 1565.297 kb on - strand, within HSERO_RS06875at 1565.330 kb on - strand, within HSERO_RS06875at 1565.469 kb on - strand, within HSERO_RS06875at 1565.469 kb on - strand, within HSERO_RS06875at 1565.572 kb on - strand, within HSERO_RS06875at 1565.572 kb on - strand, within HSERO_RS06875at 1565.618 kb on + strand, within HSERO_RS06875at 1565.623 kb on + strand, within HSERO_RS06875at 1565.707 kb on - strand, within HSERO_RS06875at 1565.894 kb on + strand, within HSERO_RS06875at 1566.168 kb on + strandat 1566.176 kb on - strandat 1566.310 kb on + strand, within HSERO_RS06880at 1566.310 kb on + strand, within HSERO_RS06880at 1566.493 kb on - strand, within HSERO_RS06880at 1566.625 kb on - strandat 1566.766 kb on + strand, within HSERO_RS06880

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM
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1,564,198 + -0.2
1,564,216 + -1.1
1,564,278 - HSERO_RS06870 0.16 +0.6
1,564,318 - HSERO_RS06870 0.20 -0.1
1,564,329 + HSERO_RS06870 0.21 +1.0
1,564,530 - +0.8
1,564,530 - HSERO_RS06870 0.43 -0.9
1,564,790 + HSERO_RS06870 0.71 -0.8
1,564,793 - HSERO_RS06870 0.72 -1.9
1,564,839 + +1.4
1,564,847 + HSERO_RS06870 0.78 -0.3
1,564,859 + HSERO_RS06870 0.79 -0.3
1,564,967 + -1.3
1,565,089 + +0.4
1,565,256 + +0.1
1,565,297 - HSERO_RS06875 0.14 -0.2
1,565,330 - HSERO_RS06875 0.17 +0.5
1,565,469 - HSERO_RS06875 0.32 -1.8
1,565,469 - HSERO_RS06875 0.32 -0.2
1,565,572 - HSERO_RS06875 0.43 -0.5
1,565,572 - HSERO_RS06875 0.43 -1.3
1,565,618 + HSERO_RS06875 0.48 +0.1
1,565,623 + HSERO_RS06875 0.48 -0.6
1,565,707 - HSERO_RS06875 0.57 -0.1
1,565,894 + HSERO_RS06875 0.77 -2.8
1,566,168 + -2.2
1,566,176 - -0.1
1,566,310 + HSERO_RS06880 0.17 -0.9
1,566,310 + HSERO_RS06880 0.17 -0.2
1,566,493 - HSERO_RS06880 0.43 +1.6
1,566,625 - -0.6
1,566,766 + HSERO_RS06880 0.81 -2.9

Or see this region's nucleotide sequence