Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03275

Experiment: Lomefloxacin 0.012 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03270 and HSERO_RS03275 are separated by 359 nucleotidesHSERO_RS03275 and HSERO_RS03280 are separated by 535 nucleotides HSERO_RS03270: HSERO_RS03270 - protein RecA, at 719,977 to 721,032 _RS03270 HSERO_RS03275: HSERO_RS03275 - regulatory protein RecX, at 721,392 to 721,856 _RS03275 HSERO_RS03280: HSERO_RS03280 - malate--CoA ligase subunit beta, at 722,392 to 723,552 _RS03280 Position (kb) 721 722Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 720.669 kb on - strand, within HSERO_RS03270at 720.773 kb on + strand, within HSERO_RS03270at 720.844 kb on - strand, within HSERO_RS03270at 720.905 kb on - strand, within HSERO_RS03270at 720.972 kb on + strandat 721.088 kb on + strandat 721.110 kb on + strandat 721.209 kb on - strandat 721.219 kb on + strandat 721.338 kb on - strandat 721.367 kb on + strandat 721.477 kb on + strand, within HSERO_RS03275at 721.528 kb on + strand, within HSERO_RS03275at 721.528 kb on + strand, within HSERO_RS03275at 721.536 kb on - strand, within HSERO_RS03275at 721.761 kb on + strand, within HSERO_RS03275at 721.761 kb on + strand, within HSERO_RS03275at 721.779 kb on - strand, within HSERO_RS03275at 721.825 kb on + strandat 722.025 kb on - strandat 722.062 kb on + strandat 722.065 kb on - strandat 722.164 kb on - strandat 722.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM
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720,669 - HSERO_RS03270 0.66 -3.7
720,773 + HSERO_RS03270 0.75 -0.4
720,844 - HSERO_RS03270 0.82 -3.2
720,905 - HSERO_RS03270 0.88 -3.9
720,972 + +4.2
721,088 + -1.6
721,110 + -0.5
721,209 - -4.0
721,219 + -0.2
721,338 - +0.9
721,367 + +0.9
721,477 + HSERO_RS03275 0.18 -3.1
721,528 + HSERO_RS03275 0.29 -4.9
721,528 + HSERO_RS03275 0.29 -3.6
721,536 - HSERO_RS03275 0.31 -3.4
721,761 + HSERO_RS03275 0.79 -2.4
721,761 + HSERO_RS03275 0.79 -3.0
721,779 - HSERO_RS03275 0.83 -2.7
721,825 + -0.4
722,025 - +1.5
722,062 + -0.3
722,065 - +0.2
722,164 - +1.8
722,332 - +2.1

Or see this region's nucleotide sequence