Experiment: Lomefloxacin 0.012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03265 and HSERO_RS03270 are separated by 420 nucleotides HSERO_RS03270 and HSERO_RS03275 are separated by 359 nucleotides
HSERO_RS03265: HSERO_RS03265 - transcription regulator protein, at 717,928 to 719,556
_RS03265
HSERO_RS03270: HSERO_RS03270 - protein RecA, at 719,977 to 721,032
_RS03270
HSERO_RS03275: HSERO_RS03275 - regulatory protein RecX, at 721,392 to 721,856
_RS03275
Position (kb) 719
720
721
722 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 719.390 kb on - strand, within HSERO_RS03265 at 719.390 kb on - strand, within HSERO_RS03265 at 719.516 kb on - strand at 719.626 kb on + strand at 719.651 kb on - strand at 719.670 kb on + strand at 719.727 kb on + strand at 719.842 kb on + strand at 720.002 kb on + strand at 720.328 kb on - strand, within HSERO_RS03270 at 720.669 kb on - strand, within HSERO_RS03270 at 720.773 kb on + strand, within HSERO_RS03270 at 720.844 kb on - strand, within HSERO_RS03270 at 720.905 kb on - strand, within HSERO_RS03270 at 720.972 kb on + strand at 721.088 kb on + strand at 721.110 kb on + strand at 721.209 kb on - strand at 721.219 kb on + strand at 721.338 kb on - strand at 721.367 kb on + strand at 721.477 kb on + strand, within HSERO_RS03275 at 721.528 kb on + strand, within HSERO_RS03275 at 721.528 kb on + strand, within HSERO_RS03275 at 721.536 kb on - strand, within HSERO_RS03275 at 721.761 kb on + strand, within HSERO_RS03275 at 721.761 kb on + strand, within HSERO_RS03275 at 721.779 kb on - strand, within HSERO_RS03275 at 721.825 kb on + strand at 722.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM remove 719,390 - HSERO_RS03265 0.90 +1.2 719,390 - HSERO_RS03265 0.90 +0.3 719,516 - +1.1 719,626 + +1.0 719,651 - -1.0 719,670 + +1.0 719,727 + +0.9 719,842 + -1.6 720,002 + -4.7 720,328 - HSERO_RS03270 0.33 -5.9 720,669 - HSERO_RS03270 0.66 -3.7 720,773 + HSERO_RS03270 0.75 -0.4 720,844 - HSERO_RS03270 0.82 -3.2 720,905 - HSERO_RS03270 0.88 -3.9 720,972 + +4.2 721,088 + -1.6 721,110 + -0.5 721,209 - -4.0 721,219 + -0.2 721,338 - +0.9 721,367 + +0.9 721,477 + HSERO_RS03275 0.18 -3.1 721,528 + HSERO_RS03275 0.29 -4.9 721,528 + HSERO_RS03275 0.29 -3.6 721,536 - HSERO_RS03275 0.31 -3.4 721,761 + HSERO_RS03275 0.79 -2.4 721,761 + HSERO_RS03275 0.79 -3.0 721,779 - HSERO_RS03275 0.83 -2.7 721,825 + -0.4 722,025 - +1.5
Or see this region's nucleotide sequence