Experiment: Lomefloxacin 0.012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01860 and HSERO_RS01865 are separated by 1 nucleotides HSERO_RS01865 and HSERO_RS01870 are separated by 133 nucleotides HSERO_RS01870 and HSERO_RS01875 overlap by 4 nucleotides HSERO_RS01875 and HSERO_RS01880 are separated by 3 nucleotides
HSERO_RS01860: HSERO_RS01860 - sulfonate ABC transporter permease, at 408,898 to 409,719
_RS01860
HSERO_RS01865: HSERO_RS01865 - sulfonate ABC transporter ATP-binding protein, at 409,721 to 410,530
_RS01865
HSERO_RS01870: HSERO_RS01870 - ABC transporter permease, at 410,664 to 411,476
_RS01870
HSERO_RS01875: HSERO_RS01875 - hypothetical protein, at 411,473 to 411,757
_RS01875
HSERO_RS01880: HSERO_RS01880 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 411,761 to 412,384
_RS01880
Position (kb) 410
411
412 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 409.749 kb on + strand at 409.749 kb on + strand at 409.757 kb on - strand at 409.915 kb on - strand, within HSERO_RS01865 at 410.090 kb on + strand, within HSERO_RS01865 at 410.483 kb on - strand at 410.489 kb on + strand at 410.514 kb on - strand at 410.540 kb on + strand at 410.638 kb on + strand at 410.649 kb on + strand at 410.657 kb on - strand at 410.696 kb on + strand at 410.789 kb on + strand, within HSERO_RS01870 at 411.213 kb on - strand, within HSERO_RS01870 at 411.253 kb on + strand, within HSERO_RS01870 at 411.385 kb on + strand, within HSERO_RS01870 at 411.385 kb on + strand, within HSERO_RS01870 at 411.687 kb on + strand, within HSERO_RS01875 at 411.713 kb on + strand, within HSERO_RS01875 at 411.949 kb on - strand, within HSERO_RS01880 at 412.163 kb on + strand, within HSERO_RS01880 at 412.257 kb on + strand, within HSERO_RS01880 at 412.267 kb on + strand, within HSERO_RS01880 at 412.356 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM remove 409,749 + -0.8 409,749 + -1.1 409,757 - -0.2 409,915 - HSERO_RS01865 0.24 +0.6 410,090 + HSERO_RS01865 0.46 -1.9 410,483 - +0.3 410,489 + +0.4 410,514 - -0.9 410,540 + -3.2 410,638 + -0.7 410,649 + -1.2 410,657 - +0.3 410,696 + -3.0 410,789 + HSERO_RS01870 0.15 -1.2 411,213 - HSERO_RS01870 0.68 -2.6 411,253 + HSERO_RS01870 0.72 -1.2 411,385 + HSERO_RS01870 0.89 -2.0 411,385 + HSERO_RS01870 0.89 +0.6 411,687 + HSERO_RS01875 0.75 +0.1 411,713 + HSERO_RS01875 0.84 -0.8 411,949 - HSERO_RS01880 0.30 +0.2 412,163 + HSERO_RS01880 0.64 +0.8 412,257 + HSERO_RS01880 0.79 +0.2 412,267 + HSERO_RS01880 0.81 -0.2 412,356 + +1.4
Or see this region's nucleotide sequence