Experiment: Lomefloxacin 0.012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01570 and HSERO_RS01575 are separated by 306 nucleotides HSERO_RS01575 and HSERO_RS01580 are separated by 299 nucleotides
HSERO_RS01570: HSERO_RS01570 - esterase, at 348,600 to 349,598
_RS01570
HSERO_RS01575: HSERO_RS01575 - transcriptional regulator, at 349,905 to 350,918
_RS01575
HSERO_RS01580: HSERO_RS01580 - AraC family transcriptional regulator, at 351,218 to 352,234
_RS01580
Position (kb) 349
350
351 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 348.958 kb on + strand, within HSERO_RS01570 at 348.959 kb on - strand, within HSERO_RS01570 at 349.148 kb on + strand, within HSERO_RS01570 at 349.151 kb on - strand, within HSERO_RS01570 at 349.156 kb on - strand, within HSERO_RS01570 at 349.743 kb on - strand at 349.753 kb on + strand at 349.807 kb on - strand at 349.888 kb on + strand at 349.890 kb on + strand at 349.978 kb on + strand at 350.020 kb on - strand, within HSERO_RS01575 at 350.170 kb on + strand, within HSERO_RS01575 at 350.175 kb on + strand, within HSERO_RS01575 at 350.279 kb on + strand, within HSERO_RS01575 at 350.343 kb on - strand, within HSERO_RS01575 at 350.406 kb on + strand, within HSERO_RS01575 at 350.432 kb on - strand, within HSERO_RS01575 at 350.454 kb on - strand, within HSERO_RS01575 at 350.470 kb on - strand, within HSERO_RS01575 at 350.470 kb on - strand, within HSERO_RS01575 at 350.470 kb on - strand at 350.470 kb on - strand, within HSERO_RS01575 at 350.637 kb on - strand, within HSERO_RS01575 at 350.759 kb on - strand, within HSERO_RS01575 at 350.831 kb on + strand at 350.869 kb on - strand at 350.956 kb on - strand at 351.124 kb on + strand at 351.305 kb on - strand at 351.364 kb on + strand, within HSERO_RS01580 at 351.452 kb on - strand, within HSERO_RS01580 at 351.458 kb on - strand, within HSERO_RS01580 at 351.500 kb on - strand, within HSERO_RS01580 at 351.541 kb on + strand, within HSERO_RS01580 at 351.555 kb on + strand, within HSERO_RS01580 at 351.582 kb on + strand, within HSERO_RS01580 at 351.597 kb on + strand, within HSERO_RS01580 at 351.597 kb on + strand, within HSERO_RS01580 at 351.868 kb on + strand, within HSERO_RS01580 at 351.907 kb on + strand, within HSERO_RS01580
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM remove 348,958 + HSERO_RS01570 0.36 +0.3 348,959 - HSERO_RS01570 0.36 -0.1 349,148 + HSERO_RS01570 0.55 +0.2 349,151 - HSERO_RS01570 0.55 +0.8 349,156 - HSERO_RS01570 0.56 +0.9 349,743 - +0.4 349,753 + -1.6 349,807 - -0.4 349,888 + +0.1 349,890 + -0.2 349,978 + -1.2 350,020 - HSERO_RS01575 0.11 +0.2 350,170 + HSERO_RS01575 0.26 -0.0 350,175 + HSERO_RS01575 0.27 -0.4 350,279 + HSERO_RS01575 0.37 -0.6 350,343 - HSERO_RS01575 0.43 +0.0 350,406 + HSERO_RS01575 0.49 -0.2 350,432 - HSERO_RS01575 0.52 -2.0 350,454 - HSERO_RS01575 0.54 +0.2 350,470 - HSERO_RS01575 0.56 +0.8 350,470 - HSERO_RS01575 0.56 -0.3 350,470 - +1.4 350,470 - HSERO_RS01575 0.56 +0.7 350,637 - HSERO_RS01575 0.72 -0.4 350,759 - HSERO_RS01575 0.84 +0.3 350,831 + +4.6 350,869 - +1.1 350,956 - +0.2 351,124 + -0.4 351,305 - +1.7 351,364 + HSERO_RS01580 0.14 -0.9 351,452 - HSERO_RS01580 0.23 -1.5 351,458 - HSERO_RS01580 0.24 +1.2 351,500 - HSERO_RS01580 0.28 +1.0 351,541 + HSERO_RS01580 0.32 -0.5 351,555 + HSERO_RS01580 0.33 -0.7 351,582 + HSERO_RS01580 0.36 -0.2 351,597 + HSERO_RS01580 0.37 +1.3 351,597 + HSERO_RS01580 0.37 +1.2 351,868 + HSERO_RS01580 0.64 -2.2 351,907 + HSERO_RS01580 0.68 +0.4
Or see this region's nucleotide sequence