Experiment: Lomefloxacin 0.012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01545 and HSERO_RS01550 are separated by 107 nucleotides HSERO_RS01550 and HSERO_RS01555 are separated by 78 nucleotides HSERO_RS01555 and HSERO_RS01560 are separated by 33 nucleotides
HSERO_RS01545: HSERO_RS01545 - sulfate transporter, at 340,347 to 341,837
_RS01545
HSERO_RS01550: HSERO_RS01550 - hypothetical protein, at 341,945 to 342,448
_RS01550
HSERO_RS01555: HSERO_RS01555 - RND transporter, at 342,527 to 344,041
_RS01555
HSERO_RS01560: HSERO_RS01560 - transporter, at 344,075 to 347,290
_RS01560
Position (kb) 342
343
344
345 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 341.678 kb on + strand, within HSERO_RS01545 at 341.724 kb on + strand at 341.724 kb on + strand at 341.746 kb on + strand at 342.015 kb on - strand, within HSERO_RS01550 at 342.056 kb on + strand, within HSERO_RS01550 at 342.239 kb on - strand, within HSERO_RS01550 at 342.296 kb on + strand, within HSERO_RS01550 at 342.523 kb on + strand at 342.531 kb on - strand at 342.597 kb on - strand at 342.755 kb on - strand, within HSERO_RS01555 at 342.755 kb on - strand, within HSERO_RS01555 at 342.821 kb on + strand, within HSERO_RS01555 at 342.829 kb on - strand, within HSERO_RS01555 at 342.886 kb on - strand, within HSERO_RS01555 at 342.928 kb on - strand, within HSERO_RS01555 at 342.979 kb on - strand, within HSERO_RS01555 at 343.380 kb on - strand, within HSERO_RS01555 at 343.422 kb on + strand at 343.440 kb on + strand, within HSERO_RS01555 at 343.467 kb on + strand, within HSERO_RS01555 at 343.472 kb on + strand, within HSERO_RS01555 at 343.477 kb on + strand, within HSERO_RS01555 at 343.565 kb on - strand, within HSERO_RS01555 at 343.705 kb on - strand, within HSERO_RS01555 at 343.742 kb on - strand, within HSERO_RS01555 at 343.776 kb on - strand, within HSERO_RS01555 at 343.834 kb on - strand, within HSERO_RS01555 at 343.845 kb on + strand, within HSERO_RS01555 at 343.942 kb on - strand at 344.178 kb on + strand at 344.212 kb on - strand at 344.246 kb on - strand at 344.316 kb on + strand at 344.347 kb on - strand at 344.478 kb on - strand, within HSERO_RS01560 at 344.485 kb on + strand, within HSERO_RS01560 at 344.526 kb on - strand, within HSERO_RS01560 at 344.625 kb on + strand, within HSERO_RS01560 at 344.678 kb on + strand, within HSERO_RS01560 at 344.678 kb on + strand, within HSERO_RS01560 at 345.024 kb on + strand, within HSERO_RS01560 at 345.032 kb on - strand, within HSERO_RS01560
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM remove 341,678 + HSERO_RS01545 0.89 +0.8 341,724 + +0.2 341,724 + +0.1 341,746 + -0.2 342,015 - HSERO_RS01550 0.14 -0.3 342,056 + HSERO_RS01550 0.22 -2.5 342,239 - HSERO_RS01550 0.58 -0.9 342,296 + HSERO_RS01550 0.70 -2.5 342,523 + -0.6 342,531 - +0.0 342,597 - +0.4 342,755 - HSERO_RS01555 0.15 -0.0 342,755 - HSERO_RS01555 0.15 +0.2 342,821 + HSERO_RS01555 0.19 -0.1 342,829 - HSERO_RS01555 0.20 +0.5 342,886 - HSERO_RS01555 0.24 -1.9 342,928 - HSERO_RS01555 0.26 -0.6 342,979 - HSERO_RS01555 0.30 +0.2 343,380 - HSERO_RS01555 0.56 -0.1 343,422 + +2.3 343,440 + HSERO_RS01555 0.60 +0.8 343,467 + HSERO_RS01555 0.62 +1.1 343,472 + HSERO_RS01555 0.62 -2.7 343,477 + HSERO_RS01555 0.63 +0.3 343,565 - HSERO_RS01555 0.69 +1.0 343,705 - HSERO_RS01555 0.78 +0.6 343,742 - HSERO_RS01555 0.80 +0.7 343,776 - HSERO_RS01555 0.82 +0.9 343,834 - HSERO_RS01555 0.86 -0.3 343,845 + HSERO_RS01555 0.87 -0.7 343,942 - -0.6 344,178 + -4.2 344,212 - -3.7 344,246 - +0.2 344,316 + -2.2 344,347 - -0.1 344,478 - HSERO_RS01560 0.13 +0.6 344,485 + HSERO_RS01560 0.13 +0.2 344,526 - HSERO_RS01560 0.14 +0.2 344,625 + HSERO_RS01560 0.17 -0.4 344,678 + HSERO_RS01560 0.19 +0.8 344,678 + HSERO_RS01560 0.19 -1.4 345,024 + HSERO_RS01560 0.30 +1.5 345,032 - HSERO_RS01560 0.30 +0.5
Or see this region's nucleotide sequence