Experiment: Lomefloxacin 0.012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01325 and HSERO_RS01330 overlap by 1 nucleotides HSERO_RS01330 and HSERO_RS01335 are separated by 60 nucleotides HSERO_RS01335 and HSERO_RS01340 are separated by 26 nucleotides
HSERO_RS01325: HSERO_RS01325 - cation/multidrug efflux protein, at 281,334 to 284,477
_RS01325
HSERO_RS01330: HSERO_RS01330 - RND transporter, at 284,477 to 285,958
_RS01330
HSERO_RS01335: HSERO_RS01335 - sugar ABC transporter permease, at 286,019 to 286,870
_RS01335
HSERO_RS01340: HSERO_RS01340 - sugar ABC transporter permease, at 286,897 to 287,832
_RS01340
Position (kb) 284
285
286 Strain fitness (log2 ratio) -1
0
1
2 at 283.706 kb on + strand, within HSERO_RS01325 at 283.714 kb on - strand, within HSERO_RS01325 at 284.106 kb on + strand, within HSERO_RS01325 at 284.718 kb on - strand, within HSERO_RS01330 at 285.880 kb on + strand at 285.880 kb on + strand at 285.901 kb on - strand at 285.971 kb on + strand at 286.076 kb on + strand at 286.084 kb on - strand at 286.177 kb on - strand, within HSERO_RS01335 at 286.363 kb on - strand, within HSERO_RS01335 at 286.448 kb on - strand, within HSERO_RS01335 at 286.537 kb on + strand, within HSERO_RS01335 at 286.560 kb on - strand, within HSERO_RS01335 at 286.664 kb on + strand, within HSERO_RS01335 at 286.721 kb on - strand, within HSERO_RS01335 at 286.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM remove 283,706 + HSERO_RS01325 0.75 +2.5 283,714 - HSERO_RS01325 0.76 +0.3 284,106 + HSERO_RS01325 0.88 +1.8 284,718 - HSERO_RS01330 0.16 -1.1 285,880 + +0.3 285,880 + +0.1 285,901 - +0.5 285,971 + -0.8 286,076 + -0.2 286,084 - +0.1 286,177 - HSERO_RS01335 0.19 +0.3 286,363 - HSERO_RS01335 0.40 -0.1 286,448 - HSERO_RS01335 0.50 +0.1 286,537 + HSERO_RS01335 0.61 +0.8 286,560 - HSERO_RS01335 0.63 +0.1 286,664 + HSERO_RS01335 0.76 -0.9 286,721 - HSERO_RS01335 0.82 -0.7 286,914 + -0.4
Or see this region's nucleotide sequence