Experiment: Lomefloxacin 0.012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01015 and HSERO_RS01020 are separated by 22 nucleotides HSERO_RS01020 and HSERO_RS01025 are separated by 29 nucleotides HSERO_RS01025 and HSERO_RS01030 are separated by 10 nucleotides HSERO_RS01030 and HSERO_RS01035 overlap by 4 nucleotides
HSERO_RS01015: HSERO_RS01015 - hypothetical protein, at 217,462 to 218,649
_RS01015
HSERO_RS01020: HSERO_RS01020 - hypothetical protein, at 218,672 to 219,103
_RS01020
HSERO_RS01025: HSERO_RS01025 - hypothetical protein, at 219,133 to 220,320
_RS01025
HSERO_RS01030: HSERO_RS01030 - tail-like protein, at 220,331 to 220,822
_RS01030
HSERO_RS01035: HSERO_RS01035 - phage-related tail protein, at 220,819 to 221,499
_RS01035
Position (kb) 219
220
221 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 218.198 kb on + strand, within HSERO_RS01015 at 218.206 kb on - strand, within HSERO_RS01015 at 218.206 kb on - strand, within HSERO_RS01015 at 218.206 kb on - strand, within HSERO_RS01015 at 218.282 kb on + strand, within HSERO_RS01015 at 218.381 kb on + strand, within HSERO_RS01015 at 218.669 kb on + strand at 218.807 kb on + strand, within HSERO_RS01020 at 218.807 kb on + strand, within HSERO_RS01020 at 218.984 kb on + strand, within HSERO_RS01020 at 218.992 kb on - strand, within HSERO_RS01020 at 219.253 kb on + strand, within HSERO_RS01025 at 219.261 kb on - strand, within HSERO_RS01025 at 219.261 kb on - strand, within HSERO_RS01025 at 219.273 kb on + strand, within HSERO_RS01025 at 219.526 kb on + strand, within HSERO_RS01025 at 219.526 kb on + strand, within HSERO_RS01025 at 219.661 kb on + strand, within HSERO_RS01025 at 219.832 kb on - strand, within HSERO_RS01025 at 219.924 kb on + strand, within HSERO_RS01025 at 219.925 kb on + strand, within HSERO_RS01025 at 219.934 kb on + strand, within HSERO_RS01025 at 220.128 kb on + strand, within HSERO_RS01025 at 220.414 kb on + strand, within HSERO_RS01030 at 220.420 kb on + strand, within HSERO_RS01030 at 220.447 kb on - strand, within HSERO_RS01030 at 220.485 kb on - strand, within HSERO_RS01030 at 220.485 kb on - strand, within HSERO_RS01030 at 220.529 kb on + strand, within HSERO_RS01030 at 220.553 kb on - strand, within HSERO_RS01030 at 220.592 kb on + strand, within HSERO_RS01030 at 220.596 kb on - strand, within HSERO_RS01030 at 220.596 kb on - strand, within HSERO_RS01030 at 220.828 kb on + strand at 220.828 kb on + strand at 220.847 kb on - strand at 220.871 kb on - strand at 221.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM remove 218,198 + HSERO_RS01015 0.62 +0.6 218,206 - HSERO_RS01015 0.63 +0.3 218,206 - HSERO_RS01015 0.63 +0.4 218,206 - HSERO_RS01015 0.63 +0.6 218,282 + HSERO_RS01015 0.69 -2.4 218,381 + HSERO_RS01015 0.77 -0.2 218,669 + -2.0 218,807 + HSERO_RS01020 0.31 +1.4 218,807 + HSERO_RS01020 0.31 -4.7 218,984 + HSERO_RS01020 0.72 -0.6 218,992 - HSERO_RS01020 0.74 +0.2 219,253 + HSERO_RS01025 0.10 +0.3 219,261 - HSERO_RS01025 0.11 -3.7 219,261 - HSERO_RS01025 0.11 +0.9 219,273 + HSERO_RS01025 0.12 -2.8 219,526 + HSERO_RS01025 0.33 -0.3 219,526 + HSERO_RS01025 0.33 -2.3 219,661 + HSERO_RS01025 0.44 -1.5 219,832 - HSERO_RS01025 0.59 -2.7 219,924 + HSERO_RS01025 0.67 +0.5 219,925 + HSERO_RS01025 0.67 +0.4 219,934 + HSERO_RS01025 0.67 +0.2 220,128 + HSERO_RS01025 0.84 -0.5 220,414 + HSERO_RS01030 0.17 -1.3 220,420 + HSERO_RS01030 0.18 -2.3 220,447 - HSERO_RS01030 0.24 +0.7 220,485 - HSERO_RS01030 0.31 +0.9 220,485 - HSERO_RS01030 0.31 -0.8 220,529 + HSERO_RS01030 0.40 -0.7 220,553 - HSERO_RS01030 0.45 +0.6 220,592 + HSERO_RS01030 0.53 -0.3 220,596 - HSERO_RS01030 0.54 -0.1 220,596 - HSERO_RS01030 0.54 +0.7 220,828 + +0.5 220,828 + +1.1 220,847 - -0.4 220,871 - -2.0 221,254 - +0.4
Or see this region's nucleotide sequence