Experiment: Lomefloxacin 0.012 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00905 and HSERO_RS00910 are separated by 198 nucleotides HSERO_RS00910 and HSERO_RS00915 are separated by 64 nucleotides
HSERO_RS00905: HSERO_RS00905 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) <small>(from data)</small>, at 188,203 to 191,895
_RS00905
HSERO_RS00910: HSERO_RS00910 - peptidase, at 192,094 to 192,630
_RS00910
HSERO_RS00915: HSERO_RS00915 - ATP-dependent protease, at 192,695 to 194,041
_RS00915
Position (kb) 192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 191.116 kb on - strand, within HSERO_RS00905 at 191.363 kb on - strand, within HSERO_RS00905 at 191.365 kb on + strand, within HSERO_RS00905 at 191.410 kb on - strand, within HSERO_RS00905 at 191.618 kb on - strand at 191.844 kb on - strand at 191.862 kb on + strand at 192.153 kb on + strand, within HSERO_RS00910 at 192.293 kb on + strand, within HSERO_RS00910 at 192.381 kb on + strand, within HSERO_RS00910 at 192.404 kb on - strand, within HSERO_RS00910 at 192.537 kb on + strand, within HSERO_RS00910 at 192.588 kb on + strand at 192.624 kb on + strand at 192.882 kb on - strand, within HSERO_RS00915 at 193.054 kb on - strand, within HSERO_RS00915 at 193.272 kb on - strand, within HSERO_RS00915 at 193.303 kb on + strand, within HSERO_RS00915 at 193.303 kb on + strand, within HSERO_RS00915 at 193.311 kb on - strand, within HSERO_RS00915 at 193.322 kb on + strand, within HSERO_RS00915 at 193.330 kb on - strand, within HSERO_RS00915 at 193.478 kb on - strand, within HSERO_RS00915 at 193.518 kb on - strand, within HSERO_RS00915 at 193.597 kb on + strand, within HSERO_RS00915 at 193.605 kb on - strand, within HSERO_RS00915
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM remove 191,116 - HSERO_RS00905 0.79 +0.8 191,363 - HSERO_RS00905 0.86 +1.0 191,365 + HSERO_RS00905 0.86 -1.7 191,410 - HSERO_RS00905 0.87 +1.1 191,618 - -2.4 191,844 - -0.0 191,862 + -0.6 192,153 + HSERO_RS00910 0.11 -0.5 192,293 + HSERO_RS00910 0.37 -0.9 192,381 + HSERO_RS00910 0.53 -2.7 192,404 - HSERO_RS00910 0.58 -0.1 192,537 + HSERO_RS00910 0.82 -2.3 192,588 + +0.5 192,624 + +0.7 192,882 - HSERO_RS00915 0.14 -2.3 193,054 - HSERO_RS00915 0.27 -1.0 193,272 - HSERO_RS00915 0.43 -1.7 193,303 + HSERO_RS00915 0.45 -3.6 193,303 + HSERO_RS00915 0.45 +0.6 193,311 - HSERO_RS00915 0.46 -0.7 193,322 + HSERO_RS00915 0.47 +2.5 193,330 - HSERO_RS00915 0.47 -0.4 193,478 - HSERO_RS00915 0.58 -2.2 193,518 - HSERO_RS00915 0.61 -1.3 193,597 + HSERO_RS00915 0.67 -0.3 193,605 - HSERO_RS00915 0.68 -0.0
Or see this region's nucleotide sequence