Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00825

Experiment: Lomefloxacin 0.012 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS00815 and HSERO_RS00820 are separated by 150 nucleotidesHSERO_RS00820 and HSERO_RS00825 are separated by 92 nucleotidesHSERO_RS00825 and HSERO_RS00830 are separated by 3 nucleotides HSERO_RS00815: HSERO_RS00815 - sulfurtransferase, at 169,055 to 169,468 _RS00815 HSERO_RS00820: HSERO_RS00820 - phosphoglyceromutase, at 169,619 to 170,365 _RS00820 HSERO_RS00825: HSERO_RS00825 - protease, at 170,458 to 171,870 _RS00825 HSERO_RS00830: HSERO_RS00830 - peptidase S41, at 171,874 to 173,370 _RS00830 Position (kb) 170 171 172Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 169.535 kb on - strandat 169.535 kb on - strandat 169.537 kb on + strandat 169.537 kb on + strandat 169.545 kb on - strandat 170.374 kb on + strandat 170.382 kb on - strandat 170.529 kb on - strandat 170.646 kb on - strand, within HSERO_RS00825at 170.656 kb on - strand, within HSERO_RS00825at 170.763 kb on - strand, within HSERO_RS00825at 170.795 kb on - strand, within HSERO_RS00825at 170.795 kb on - strand, within HSERO_RS00825at 170.850 kb on + strand, within HSERO_RS00825at 170.905 kb on + strand, within HSERO_RS00825at 171.298 kb on - strand, within HSERO_RS00825at 171.310 kb on + strand, within HSERO_RS00825at 171.369 kb on - strand, within HSERO_RS00825at 171.596 kb on + strand, within HSERO_RS00825at 171.644 kb on + strand, within HSERO_RS00825at 171.721 kb on + strand, within HSERO_RS00825at 171.721 kb on + strand, within HSERO_RS00825at 171.729 kb on - strandat 171.744 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.012 mM
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169,535 - +0.7
169,535 - +0.4
169,537 + -0.2
169,537 + -0.3
169,545 - +1.7
170,374 + -0.7
170,382 - -0.1
170,529 - -0.2
170,646 - HSERO_RS00825 0.13 -3.4
170,656 - HSERO_RS00825 0.14 -0.7
170,763 - HSERO_RS00825 0.22 -0.7
170,795 - HSERO_RS00825 0.24 -3.8
170,795 - HSERO_RS00825 0.24 -1.5
170,850 + HSERO_RS00825 0.28 -0.7
170,905 + HSERO_RS00825 0.32 -0.0
171,298 - HSERO_RS00825 0.59 -1.0
171,310 + HSERO_RS00825 0.60 +0.4
171,369 - HSERO_RS00825 0.64 +0.3
171,596 + HSERO_RS00825 0.81 -3.1
171,644 + HSERO_RS00825 0.84 -0.8
171,721 + HSERO_RS00825 0.89 -0.4
171,721 + HSERO_RS00825 0.89 -0.2
171,729 - +0.0
171,744 + -1.4

Or see this region's nucleotide sequence