Strain Fitness in Rahnella sp. WP5 around EX31_RS25640

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22960 and EX31_RS25640 are separated by 301 nucleotidesEX31_RS25640 and EX31_RS22965 are separated by 242 nucleotides EX31_RS22960: EX31_RS22960 - ArpA protein, at 354,513 to 355,292 _RS22960 EX31_RS25640: EX31_RS25640 - DUF2767 family protein, at 355,594 to 355,791 _RS25640 EX31_RS22965: EX31_RS22965 - DUF2461 domain-containing protein, at 356,034 to 356,747 _RS22965 Position (kb) 355 356Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 354.632 kb on + strand, within EX31_RS22960at 354.690 kb on + strand, within EX31_RS22960at 354.690 kb on + strand, within EX31_RS22960at 354.690 kb on + strand, within EX31_RS22960at 354.691 kb on - strand, within EX31_RS22960at 354.693 kb on + strand, within EX31_RS22960at 354.693 kb on + strand, within EX31_RS22960at 354.693 kb on + strand, within EX31_RS22960at 354.694 kb on - strand, within EX31_RS22960at 354.694 kb on - strand, within EX31_RS22960at 354.694 kb on - strand, within EX31_RS22960at 354.694 kb on - strand, within EX31_RS22960at 354.694 kb on - strand, within EX31_RS22960at 354.694 kb on - strand, within EX31_RS22960at 354.694 kb on - strand, within EX31_RS22960at 354.694 kb on - strand, within EX31_RS22960at 354.704 kb on + strand, within EX31_RS22960at 354.717 kb on + strand, within EX31_RS22960at 354.717 kb on + strand, within EX31_RS22960at 354.717 kb on + strand, within EX31_RS22960at 354.717 kb on + strand, within EX31_RS22960at 354.717 kb on + strand, within EX31_RS22960at 354.717 kb on + strand, within EX31_RS22960at 354.718 kb on - strand, within EX31_RS22960at 354.721 kb on + strand, within EX31_RS22960at 354.791 kb on + strand, within EX31_RS22960at 354.791 kb on + strand, within EX31_RS22960at 354.837 kb on + strand, within EX31_RS22960at 354.837 kb on + strand, within EX31_RS22960at 354.838 kb on - strand, within EX31_RS22960at 354.838 kb on - strand, within EX31_RS22960at 354.838 kb on - strand, within EX31_RS22960at 354.838 kb on - strand, within EX31_RS22960at 354.838 kb on - strand, within EX31_RS22960at 354.894 kb on + strand, within EX31_RS22960at 354.895 kb on - strand, within EX31_RS22960at 354.895 kb on - strand, within EX31_RS22960at 354.895 kb on - strand, within EX31_RS22960at 355.032 kb on + strand, within EX31_RS22960at 355.045 kb on + strand, within EX31_RS22960at 355.278 kb on + strandat 355.278 kb on + strandat 355.279 kb on - strandat 355.332 kb on + strandat 355.332 kb on + strandat 355.332 kb on + strandat 355.332 kb on + strandat 355.332 kb on + strandat 355.332 kb on + strandat 355.332 kb on + strandat 355.332 kb on + strandat 355.332 kb on + strandat 355.333 kb on - strandat 355.333 kb on - strandat 355.333 kb on - strandat 355.333 kb on - strandat 355.338 kb on + strandat 355.481 kb on + strandat 355.482 kb on - strandat 355.482 kb on - strandat 355.482 kb on - strandat 355.482 kb on - strandat 355.482 kb on - strandat 355.516 kb on + strandat 355.556 kb on + strandat 355.561 kb on + strandat 355.593 kb on + strandat 355.593 kb on + strandat 355.594 kb on - strandat 355.637 kb on + strand, within EX31_RS25640at 355.637 kb on + strand, within EX31_RS25640at 355.637 kb on + strand, within EX31_RS25640at 355.637 kb on + strand, within EX31_RS25640at 355.637 kb on + strand, within EX31_RS25640at 355.653 kb on + strand, within EX31_RS25640at 355.653 kb on + strand, within EX31_RS25640at 355.653 kb on + strand, within EX31_RS25640at 355.654 kb on - strand, within EX31_RS25640at 355.679 kb on + strand, within EX31_RS25640at 355.679 kb on + strand, within EX31_RS25640at 355.680 kb on - strand, within EX31_RS25640at 355.690 kb on - strand, within EX31_RS25640at 355.737 kb on - strand, within EX31_RS25640at 355.737 kb on - strand, within EX31_RS25640at 355.743 kb on + strand, within EX31_RS25640at 355.743 kb on + strand, within EX31_RS25640at 355.744 kb on - strand, within EX31_RS25640at 355.749 kb on + strand, within EX31_RS25640at 355.749 kb on + strand, within EX31_RS25640at 355.750 kb on - strand, within EX31_RS25640at 355.750 kb on - strand, within EX31_RS25640at 355.772 kb on + strandat 355.789 kb on + strandat 355.789 kb on + strandat 355.790 kb on - strandat 355.867 kb on + strandat 355.867 kb on + strandat 355.867 kb on + strandat 355.868 kb on - strandat 355.868 kb on - strandat 355.868 kb on - strandat 355.959 kb on - strandat 355.959 kb on - strandat 355.961 kb on - strandat 356.026 kb on + strandat 356.065 kb on + strandat 356.065 kb on + strandat 356.310 kb on - strand, within EX31_RS22965at 356.395 kb on + strand, within EX31_RS22965at 356.396 kb on - strand, within EX31_RS22965at 356.396 kb on - strand, within EX31_RS22965at 356.396 kb on - strand, within EX31_RS22965at 356.396 kb on - strand, within EX31_RS22965at 356.412 kb on + strand, within EX31_RS22965at 356.412 kb on + strand, within EX31_RS22965at 356.412 kb on + strand, within EX31_RS22965at 356.412 kb on + strand, within EX31_RS22965at 356.413 kb on - strand, within EX31_RS22965at 356.413 kb on - strand, within EX31_RS22965at 356.460 kb on - strand, within EX31_RS22965at 356.460 kb on - strand, within EX31_RS22965at 356.561 kb on + strand, within EX31_RS22965at 356.562 kb on - strand, within EX31_RS22965at 356.621 kb on - strand, within EX31_RS22965at 356.633 kb on + strand, within EX31_RS22965at 356.640 kb on - strand, within EX31_RS22965at 356.672 kb on + strand, within EX31_RS22965at 356.730 kb on - strandat 356.730 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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354,632 + EX31_RS22960 0.15 +0.8
354,690 + EX31_RS22960 0.23 +1.2
354,690 + EX31_RS22960 0.23 -1.7
354,690 + EX31_RS22960 0.23 -1.3
354,691 - EX31_RS22960 0.23 -0.4
354,693 + EX31_RS22960 0.23 +0.5
354,693 + EX31_RS22960 0.23 +0.6
354,693 + EX31_RS22960 0.23 +0.3
354,694 - EX31_RS22960 0.23 -1.6
354,694 - EX31_RS22960 0.23 -0.5
354,694 - EX31_RS22960 0.23 -0.4
354,694 - EX31_RS22960 0.23 -0.6
354,694 - EX31_RS22960 0.23 -0.1
354,694 - EX31_RS22960 0.23 -0.4
354,694 - EX31_RS22960 0.23 +0.5
354,694 - EX31_RS22960 0.23 -0.5
354,704 + EX31_RS22960 0.24 +1.2
354,717 + EX31_RS22960 0.26 -0.4
354,717 + EX31_RS22960 0.26 -0.1
354,717 + EX31_RS22960 0.26 -0.3
354,717 + EX31_RS22960 0.26 -2.0
354,717 + EX31_RS22960 0.26 +0.1
354,717 + EX31_RS22960 0.26 +0.2
354,718 - EX31_RS22960 0.26 +2.2
354,721 + EX31_RS22960 0.27 +1.1
354,791 + EX31_RS22960 0.36 -2.3
354,791 + EX31_RS22960 0.36 -0.2
354,837 + EX31_RS22960 0.42 -0.8
354,837 + EX31_RS22960 0.42 +0.2
354,838 - EX31_RS22960 0.42 -0.8
354,838 - EX31_RS22960 0.42 +1.0
354,838 - EX31_RS22960 0.42 +1.5
354,838 - EX31_RS22960 0.42 -0.1
354,838 - EX31_RS22960 0.42 +0.0
354,894 + EX31_RS22960 0.49 -0.9
354,895 - EX31_RS22960 0.49 -1.8
354,895 - EX31_RS22960 0.49 -1.8
354,895 - EX31_RS22960 0.49 -2.3
355,032 + EX31_RS22960 0.67 +1.2
355,045 + EX31_RS22960 0.68 -1.8
355,278 + +1.2
355,278 + +0.2
355,279 - -1.0
355,332 + -0.8
355,332 + -0.9
355,332 + -1.4
355,332 + +1.0
355,332 + +0.8
355,332 + +0.6
355,332 + +2.4
355,332 + -0.1
355,332 + +0.9
355,333 - +3.3
355,333 - -2.1
355,333 - -0.4
355,333 - +1.5
355,338 + +0.2
355,481 + +1.2
355,482 - +2.2
355,482 - +1.2
355,482 - -0.0
355,482 - -1.8
355,482 - +0.2
355,516 + +0.4
355,556 + +1.5
355,561 + +1.4
355,593 + -0.4
355,593 + +0.8
355,594 - -1.0
355,637 + EX31_RS25640 0.22 +1.4
355,637 + EX31_RS25640 0.22 +0.6
355,637 + EX31_RS25640 0.22 +4.2
355,637 + EX31_RS25640 0.22 +0.2
355,637 + EX31_RS25640 0.22 +0.5
355,653 + EX31_RS25640 0.30 +1.8
355,653 + EX31_RS25640 0.30 -0.6
355,653 + EX31_RS25640 0.30 +0.8
355,654 - EX31_RS25640 0.30 +0.2
355,679 + EX31_RS25640 0.43 -0.6
355,679 + EX31_RS25640 0.43 +0.2
355,680 - EX31_RS25640 0.43 +0.7
355,690 - EX31_RS25640 0.48 +0.5
355,737 - EX31_RS25640 0.72 +1.3
355,737 - EX31_RS25640 0.72 +1.2
355,743 + EX31_RS25640 0.75 -0.4
355,743 + EX31_RS25640 0.75 +1.0
355,744 - EX31_RS25640 0.76 +0.6
355,749 + EX31_RS25640 0.78 +0.3
355,749 + EX31_RS25640 0.78 -0.4
355,750 - EX31_RS25640 0.79 -0.4
355,750 - EX31_RS25640 0.79 -0.4
355,772 + -0.2
355,789 + -1.9
355,789 + +0.6
355,790 - +0.2
355,867 + -1.6
355,867 + +1.8
355,867 + -1.5
355,868 - -1.4
355,868 - +0.2
355,868 - -0.5
355,959 - +1.3
355,959 - -2.1
355,961 - +1.2
356,026 + +0.9
356,065 + -1.4
356,065 + +0.4
356,310 - EX31_RS22965 0.39 -0.8
356,395 + EX31_RS22965 0.51 -1.8
356,396 - EX31_RS22965 0.51 +0.3
356,396 - EX31_RS22965 0.51 +0.7
356,396 - EX31_RS22965 0.51 +1.0
356,396 - EX31_RS22965 0.51 +2.2
356,412 + EX31_RS22965 0.53 +0.0
356,412 + EX31_RS22965 0.53 +1.2
356,412 + EX31_RS22965 0.53 -1.8
356,412 + EX31_RS22965 0.53 +2.0
356,413 - EX31_RS22965 0.53 +0.9
356,413 - EX31_RS22965 0.53 +1.9
356,460 - EX31_RS22965 0.60 +0.5
356,460 - EX31_RS22965 0.60 +1.6
356,561 + EX31_RS22965 0.74 -0.1
356,562 - EX31_RS22965 0.74 +0.1
356,621 - EX31_RS22965 0.82 +0.6
356,633 + EX31_RS22965 0.84 +0.3
356,640 - EX31_RS22965 0.85 -0.1
356,672 + EX31_RS22965 0.89 +0.5
356,730 - +0.6
356,730 - -2.0

Or see this region's nucleotide sequence