Strain Fitness in Rahnella sp. WP5 around EX31_RS24385

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24375 and EX31_RS24380 are separated by 346 nucleotidesEX31_RS24380 and EX31_RS24385 are separated by 81 nucleotidesEX31_RS24385 and EX31_RS24390 are separated by 223 nucleotidesEX31_RS24390 and EX31_RS24395 are separated by 73 nucleotides EX31_RS24375: EX31_RS24375 - biofilm formation regulator BssS, at 643,349 to 643,603 _RS24375 EX31_RS24380: EX31_RS24380 - DNA damage-inducible protein I, at 643,950 to 644,204 _RS24380 EX31_RS24385: EX31_RS24385 - dihydroorotase, at 644,286 to 645,335 _RS24385 EX31_RS24390: EX31_RS24390 - antibiotic biosynthesis monooxygenase, at 645,559 to 645,846 _RS24390 EX31_RS24395: EX31_RS24395 - ribonuclease E, at 645,920 to 649,207 _RS24395 Position (kb) 644 645 646Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 643.343 kb on + strandat 643.351 kb on - strandat 643.372 kb on - strandat 643.372 kb on - strandat 643.372 kb on - strandat 643.372 kb on - strandat 643.378 kb on - strand, within EX31_RS24375at 643.378 kb on - strand, within EX31_RS24375at 643.385 kb on - strand, within EX31_RS24375at 643.421 kb on - strand, within EX31_RS24375at 643.445 kb on - strand, within EX31_RS24375at 643.448 kb on + strand, within EX31_RS24375at 643.506 kb on + strand, within EX31_RS24375at 643.506 kb on + strand, within EX31_RS24375at 643.507 kb on - strand, within EX31_RS24375at 643.517 kb on + strand, within EX31_RS24375at 643.582 kb on + strandat 643.605 kb on + strandat 643.605 kb on + strandat 643.605 kb on + strandat 643.605 kb on + strandat 643.606 kb on - strandat 643.606 kb on - strandat 643.606 kb on - strandat 643.614 kb on + strandat 643.615 kb on - strandat 643.615 kb on - strandat 643.616 kb on + strandat 643.616 kb on + strandat 643.616 kb on + strandat 643.616 kb on + strandat 643.616 kb on + strandat 643.617 kb on - strandat 643.617 kb on - strandat 643.617 kb on - strandat 643.621 kb on + strandat 643.621 kb on + strandat 643.622 kb on - strandat 643.665 kb on + strandat 643.695 kb on + strandat 643.737 kb on + strandat 643.905 kb on - strandat 643.908 kb on + strandat 643.909 kb on - strandat 643.909 kb on - strandat 644.060 kb on + strand, within EX31_RS24380at 644.061 kb on - strand, within EX31_RS24380at 644.118 kb on - strand, within EX31_RS24380at 644.126 kb on + strand, within EX31_RS24380at 644.181 kb on - strandat 644.204 kb on + strandat 644.204 kb on + strandat 644.205 kb on - strandat 644.205 kb on - strandat 644.287 kb on + strandat 644.288 kb on - strandat 644.288 kb on - strandat 644.384 kb on + strandat 644.500 kb on + strand, within EX31_RS24385at 644.756 kb on - strand, within EX31_RS24385at 644.776 kb on + strand, within EX31_RS24385at 644.776 kb on + strand, within EX31_RS24385at 644.777 kb on - strand, within EX31_RS24385at 644.948 kb on + strand, within EX31_RS24385at 644.948 kb on + strand, within EX31_RS24385at 644.948 kb on + strand, within EX31_RS24385at 644.948 kb on + strand, within EX31_RS24385at 644.949 kb on - strand, within EX31_RS24385at 645.023 kb on - strand, within EX31_RS24385at 645.098 kb on - strand, within EX31_RS24385at 645.098 kb on - strand, within EX31_RS24385at 645.098 kb on - strand, within EX31_RS24385at 645.098 kb on - strand, within EX31_RS24385at 645.122 kb on + strand, within EX31_RS24385at 645.122 kb on + strand, within EX31_RS24385at 645.147 kb on - strand, within EX31_RS24385at 645.228 kb on + strand, within EX31_RS24385at 645.284 kb on + strandat 645.285 kb on - strandat 645.416 kb on - strandat 645.421 kb on + strandat 645.448 kb on + strandat 645.458 kb on - strandat 645.501 kb on + strandat 645.529 kb on - strandat 645.635 kb on + strand, within EX31_RS24390at 645.636 kb on - strand, within EX31_RS24390at 645.659 kb on + strand, within EX31_RS24390at 645.659 kb on + strand, within EX31_RS24390at 645.659 kb on + strand, within EX31_RS24390at 645.660 kb on - strand, within EX31_RS24390at 645.673 kb on + strand, within EX31_RS24390at 645.674 kb on - strand, within EX31_RS24390at 645.696 kb on + strand, within EX31_RS24390at 645.997 kb on + strandat 646.057 kb on - strandat 646.057 kb on - strandat 646.057 kb on - strandat 646.057 kb on - strandat 646.057 kb on - strandat 646.057 kb on - strandat 646.178 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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643,343 + -0.9
643,351 - -0.4
643,372 - -1.7
643,372 - +0.8
643,372 - +1.1
643,372 - +0.5
643,378 - EX31_RS24375 0.11 -1.2
643,378 - EX31_RS24375 0.11 +3.1
643,385 - EX31_RS24375 0.14 -0.9
643,421 - EX31_RS24375 0.28 +1.1
643,445 - EX31_RS24375 0.38 -0.4
643,448 + EX31_RS24375 0.39 +1.1
643,506 + EX31_RS24375 0.62 -0.1
643,506 + EX31_RS24375 0.62 -2.2
643,507 - EX31_RS24375 0.62 +1.1
643,517 + EX31_RS24375 0.66 +2.7
643,582 + -0.9
643,605 + +0.4
643,605 + +0.7
643,605 + -0.9
643,605 + +0.6
643,606 - -1.9
643,606 - +1.1
643,606 - +3.0
643,614 + -0.2
643,615 - -0.4
643,615 - +0.4
643,616 + -1.9
643,616 + -0.4
643,616 + +1.1
643,616 + -1.2
643,616 + +0.1
643,617 - +0.4
643,617 - -1.3
643,617 - -0.4
643,621 + -0.2
643,621 + +0.6
643,622 - +1.1
643,665 + +1.4
643,695 + -0.9
643,737 + -0.4
643,905 - +0.1
643,908 + -1.4
643,909 - -1.0
643,909 - -2.4
644,060 + EX31_RS24380 0.43 +1.1
644,061 - EX31_RS24380 0.44 +0.3
644,118 - EX31_RS24380 0.66 -1.3
644,126 + EX31_RS24380 0.69 -0.6
644,181 - -1.7
644,204 + -1.9
644,204 + -0.4
644,205 - -0.2
644,205 - -1.9
644,287 + +2.6
644,288 - +1.0
644,288 - +1.7
644,384 + -0.9
644,500 + EX31_RS24385 0.20 -0.4
644,756 - EX31_RS24385 0.45 +1.1
644,776 + EX31_RS24385 0.47 -1.9
644,776 + EX31_RS24385 0.47 -1.9
644,777 - EX31_RS24385 0.47 -1.7
644,948 + EX31_RS24385 0.63 -0.9
644,948 + EX31_RS24385 0.63 -0.9
644,948 + EX31_RS24385 0.63 +0.1
644,948 + EX31_RS24385 0.63 -2.3
644,949 - EX31_RS24385 0.63 -1.7
645,023 - EX31_RS24385 0.70 +0.1
645,098 - EX31_RS24385 0.77 -2.8
645,098 - EX31_RS24385 0.77 -1.7
645,098 - EX31_RS24385 0.77 -1.2
645,098 - EX31_RS24385 0.77 -0.9
645,122 + EX31_RS24385 0.80 -1.7
645,122 + EX31_RS24385 0.80 -0.9
645,147 - EX31_RS24385 0.82 -1.2
645,228 + EX31_RS24385 0.90 +1.1
645,284 + -1.2
645,285 - -2.2
645,416 - +0.1
645,421 + +1.1
645,448 + -2.0
645,458 - +1.7
645,501 + -0.4
645,529 - -0.2
645,635 + EX31_RS24390 0.26 -1.4
645,636 - EX31_RS24390 0.27 +1.1
645,659 + EX31_RS24390 0.35 -0.1
645,659 + EX31_RS24390 0.35 +1.1
645,659 + EX31_RS24390 0.35 +0.1
645,660 - EX31_RS24390 0.35 -0.4
645,673 + EX31_RS24390 0.40 -0.9
645,674 - EX31_RS24390 0.40 +0.1
645,696 + EX31_RS24390 0.48 -0.9
645,997 + +0.1
646,057 - -1.2
646,057 - -0.9
646,057 - +1.7
646,057 - +1.1
646,057 - -0.4
646,057 - -0.9
646,178 - +0.1

Or see this region's nucleotide sequence