Strain Fitness in Rahnella sp. WP5 around EX31_RS23125

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23120 and EX31_RS23125 are separated by 38 nucleotidesEX31_RS23125 and EX31_RS23130 are separated by 3 nucleotidesEX31_RS23130 and EX31_RS23135 are separated by 206 nucleotides EX31_RS23120: EX31_RS23120 - peptidoglycan DD-transpeptidase MrdA, at 385,602 to 387,506 _RS23120 EX31_RS23125: EX31_RS23125 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 387,545 to 388,015 _RS23125 EX31_RS23130: EX31_RS23130 - ribosome silencing factor, at 388,019 to 388,336 _RS23130 EX31_RS23135: EX31_RS23135 - nicotinate-nucleotide adenylyltransferase, at 388,543 to 389,220 _RS23135 Position (kb) 387 388 389Strain fitness (log2 ratio) -2 -1 0 1 2 3at 387.517 kb on - strandat 387.517 kb on - strandat 387.517 kb on - strandat 387.517 kb on - strandat 387.517 kb on - strandat 387.575 kb on - strandat 387.578 kb on - strandat 387.578 kb on - strandat 387.926 kb on - strand, within EX31_RS23125at 387.926 kb on - strand, within EX31_RS23125at 387.949 kb on - strand, within EX31_RS23125at 388.045 kb on - strandat 388.045 kb on - strandat 388.223 kb on - strand, within EX31_RS23130at 388.238 kb on - strand, within EX31_RS23130at 388.241 kb on - strand, within EX31_RS23130at 388.250 kb on - strand, within EX31_RS23130at 388.328 kb on - strandat 388.425 kb on - strandat 388.473 kb on - strandat 388.529 kb on - strandat 388.531 kb on - strandat 388.531 kb on - strandat 388.531 kb on - strandat 388.531 kb on - strandat 388.531 kb on - strandat 388.531 kb on - strandat 388.531 kb on - strandat 388.571 kb on - strandat 388.571 kb on - strandat 388.571 kb on - strandat 388.571 kb on - strandat 388.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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387,517 - -0.2
387,517 - -0.6
387,517 - +0.2
387,517 - -0.8
387,517 - +0.3
387,575 - -1.6
387,578 - -0.1
387,578 - +0.4
387,926 - EX31_RS23125 0.81 -1.3
387,926 - EX31_RS23125 0.81 -0.8
387,949 - EX31_RS23125 0.86 +0.2
388,045 - -0.2
388,045 - +0.4
388,223 - EX31_RS23130 0.64 +2.2
388,238 - EX31_RS23130 0.69 +0.2
388,241 - EX31_RS23130 0.70 -0.4
388,250 - EX31_RS23130 0.73 -2.1
388,328 - +0.5
388,425 - -0.6
388,473 - -1.6
388,529 - +1.2
388,531 - -1.7
388,531 - +0.2
388,531 - +1.6
388,531 - +3.2
388,531 - -1.3
388,531 - -0.7
388,531 - -1.1
388,571 - -0.4
388,571 - -2.4
388,571 - -1.6
388,571 - -2.1
388,571 - -0.4

Or see this region's nucleotide sequence