Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21450 and EX31_RS21455 are separated by 106 nucleotides EX31_RS21455 and EX31_RS21460 are separated by 28 nucleotides
EX31_RS21450: EX31_RS21450 - SDR family oxidoreductase, at 32,920 to 33,762
_RS21450
EX31_RS21455: EX31_RS21455 - LysR family transcriptional regulator, at 33,869 to 34,777
_RS21455
EX31_RS21460: EX31_RS21460 - LysR family transcriptional regulator ArgP, at 34,806 to 35,708
_RS21460
Position (kb) 33
34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 32.921 kb on + strand at 32.921 kb on + strand at 32.921 kb on + strand at 32.921 kb on + strand at 32.921 kb on + strand at 32.921 kb on + strand at 32.921 kb on + strand at 32.921 kb on + strand at 32.921 kb on + strand at 32.921 kb on + strand at 32.922 kb on - strand at 32.922 kb on - strand at 32.922 kb on - strand at 32.922 kb on - strand at 32.922 kb on - strand at 32.922 kb on - strand at 32.922 kb on - strand at 32.922 kb on - strand at 32.922 kb on - strand at 32.922 kb on - strand at 32.922 kb on - strand at 32.922 kb on - strand at 32.922 kb on - strand at 33.020 kb on + strand, within EX31_RS21450 at 33.021 kb on - strand, within EX31_RS21450 at 33.046 kb on + strand, within EX31_RS21450 at 33.046 kb on + strand, within EX31_RS21450 at 33.047 kb on - strand, within EX31_RS21450 at 33.112 kb on - strand, within EX31_RS21450 at 33.145 kb on + strand, within EX31_RS21450 at 33.146 kb on - strand, within EX31_RS21450 at 33.146 kb on - strand, within EX31_RS21450 at 33.320 kb on + strand, within EX31_RS21450 at 33.320 kb on + strand, within EX31_RS21450 at 33.321 kb on - strand, within EX31_RS21450 at 33.421 kb on - strand, within EX31_RS21450 at 33.534 kb on + strand, within EX31_RS21450 at 33.534 kb on + strand, within EX31_RS21450 at 33.534 kb on + strand, within EX31_RS21450 at 33.534 kb on + strand, within EX31_RS21450 at 33.534 kb on + strand, within EX31_RS21450 at 33.535 kb on - strand, within EX31_RS21450 at 33.535 kb on - strand, within EX31_RS21450 at 33.535 kb on - strand, within EX31_RS21450 at 33.535 kb on - strand, within EX31_RS21450 at 33.535 kb on - strand, within EX31_RS21450 at 33.535 kb on - strand, within EX31_RS21450 at 33.547 kb on - strand, within EX31_RS21450 at 33.547 kb on - strand, within EX31_RS21450 at 33.609 kb on + strand, within EX31_RS21450 at 33.609 kb on + strand, within EX31_RS21450 at 33.609 kb on + strand, within EX31_RS21450 at 33.610 kb on - strand, within EX31_RS21450 at 33.610 kb on - strand, within EX31_RS21450 at 33.610 kb on - strand, within EX31_RS21450 at 33.610 kb on - strand, within EX31_RS21450 at 33.610 kb on - strand, within EX31_RS21450 at 33.626 kb on + strand, within EX31_RS21450 at 33.626 kb on + strand, within EX31_RS21450 at 33.626 kb on + strand, within EX31_RS21450 at 33.627 kb on - strand, within EX31_RS21450 at 33.627 kb on - strand, within EX31_RS21450 at 33.638 kb on - strand, within EX31_RS21450 at 33.638 kb on - strand, within EX31_RS21450 at 33.665 kb on - strand, within EX31_RS21450 at 33.665 kb on - strand, within EX31_RS21450 at 33.665 kb on - strand, within EX31_RS21450 at 33.697 kb on + strand at 33.697 kb on + strand at 33.698 kb on - strand at 33.698 kb on - strand at 33.698 kb on - strand at 33.745 kb on - strand at 33.745 kb on - strand at 33.805 kb on - strand at 33.813 kb on - strand at 33.816 kb on - strand at 33.816 kb on - strand at 33.816 kb on - strand at 33.816 kb on - strand at 33.816 kb on - strand at 33.829 kb on + strand at 33.858 kb on - strand at 33.882 kb on + strand at 33.920 kb on - strand at 33.967 kb on - strand, within EX31_RS21455 at 33.967 kb on - strand, within EX31_RS21455 at 33.994 kb on + strand, within EX31_RS21455 at 33.994 kb on + strand, within EX31_RS21455 at 33.994 kb on + strand, within EX31_RS21455 at 33.995 kb on - strand, within EX31_RS21455 at 33.995 kb on - strand, within EX31_RS21455 at 33.997 kb on + strand, within EX31_RS21455 at 33.997 kb on + strand, within EX31_RS21455 at 33.998 kb on - strand, within EX31_RS21455 at 33.998 kb on - strand, within EX31_RS21455 at 33.998 kb on - strand, within EX31_RS21455 at 34.096 kb on + strand, within EX31_RS21455 at 34.096 kb on + strand, within EX31_RS21455 at 34.137 kb on + strand, within EX31_RS21455 at 34.137 kb on + strand, within EX31_RS21455 at 34.137 kb on + strand, within EX31_RS21455 at 34.137 kb on + strand, within EX31_RS21455 at 34.137 kb on + strand, within EX31_RS21455 at 34.138 kb on - strand, within EX31_RS21455 at 34.138 kb on - strand, within EX31_RS21455 at 34.170 kb on + strand, within EX31_RS21455 at 34.170 kb on + strand, within EX31_RS21455 at 34.170 kb on + strand, within EX31_RS21455 at 34.170 kb on + strand, within EX31_RS21455 at 34.171 kb on - strand, within EX31_RS21455 at 34.174 kb on + strand, within EX31_RS21455 at 34.174 kb on + strand, within EX31_RS21455 at 34.175 kb on - strand, within EX31_RS21455 at 34.175 kb on - strand, within EX31_RS21455 at 34.175 kb on - strand, within EX31_RS21455 at 34.216 kb on + strand, within EX31_RS21455 at 34.217 kb on - strand, within EX31_RS21455 at 34.404 kb on - strand, within EX31_RS21455 at 34.404 kb on - strand, within EX31_RS21455 at 34.558 kb on + strand, within EX31_RS21455 at 34.558 kb on + strand, within EX31_RS21455 at 34.562 kb on - strand, within EX31_RS21455 at 34.562 kb on - strand, within EX31_RS21455 at 34.562 kb on - strand, within EX31_RS21455 at 34.607 kb on + strand, within EX31_RS21455 at 34.607 kb on + strand, within EX31_RS21455 at 34.607 kb on + strand, within EX31_RS21455 at 34.608 kb on - strand, within EX31_RS21455 at 34.608 kb on - strand, within EX31_RS21455 at 34.608 kb on - strand, within EX31_RS21455 at 34.622 kb on + strand, within EX31_RS21455 at 34.623 kb on - strand, within EX31_RS21455 at 34.623 kb on - strand, within EX31_RS21455 at 34.798 kb on + strand at 34.859 kb on + strand at 34.897 kb on + strand, within EX31_RS21460 at 34.897 kb on + strand, within EX31_RS21460 at 34.905 kb on - strand, within EX31_RS21460 at 34.905 kb on - strand, within EX31_RS21460 at 35.036 kb on + strand, within EX31_RS21460 at 35.036 kb on + strand, within EX31_RS21460 at 35.037 kb on - strand, within EX31_RS21460 at 35.037 kb on - strand, within EX31_RS21460 at 35.103 kb on - strand, within EX31_RS21460 at 35.174 kb on - strand, within EX31_RS21460 at 35.174 kb on - strand, within EX31_RS21460 at 35.210 kb on - strand, within EX31_RS21460 at 35.210 kb on - strand, within EX31_RS21460 at 35.210 kb on - strand, within EX31_RS21460 at 35.264 kb on + strand, within EX31_RS21460 at 35.264 kb on + strand, within EX31_RS21460 at 35.264 kb on + strand, within EX31_RS21460 at 35.265 kb on - strand, within EX31_RS21460 at 35.265 kb on - strand, within EX31_RS21460 at 35.265 kb on - strand, within EX31_RS21460 at 35.265 kb on - strand, within EX31_RS21460 at 35.269 kb on - strand, within EX31_RS21460 at 35.435 kb on + strand, within EX31_RS21460 at 35.435 kb on + strand, within EX31_RS21460 at 35.435 kb on + strand, within EX31_RS21460 at 35.435 kb on + strand, within EX31_RS21460 at 35.436 kb on - strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.499 kb on + strand, within EX31_RS21460 at 35.500 kb on - strand, within EX31_RS21460 at 35.500 kb on - strand, within EX31_RS21460 at 35.500 kb on - strand, within EX31_RS21460 at 35.500 kb on - strand, within EX31_RS21460 at 35.500 kb on - strand, within EX31_RS21460 at 35.500 kb on - strand, within EX31_RS21460 at 35.511 kb on + strand, within EX31_RS21460 at 35.549 kb on + strand, within EX31_RS21460 at 35.550 kb on - strand, within EX31_RS21460 at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.690 kb on + strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.691 kb on - strand at 35.692 kb on + strand at 35.693 kb on - strand at 35.693 kb on - strand at 35.693 kb on - strand at 35.693 kb on - strand at 35.693 kb on - strand at 35.724 kb on + strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.725 kb on - strand at 35.747 kb on + strand at 35.747 kb on + strand at 35.747 kb on + strand at 35.747 kb on + strand at 35.747 kb on + strand at 35.748 kb on - strand at 35.748 kb on - strand at 35.748 kb on - strand at 35.748 kb on - strand at 35.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 32,921 + +0.7 32,921 + -2.1 32,921 + +0.5 32,921 + +2.2 32,921 + -1.4 32,921 + -1.1 32,921 + -1.6 32,921 + +0.7 32,921 + -0.8 32,921 + +1.1 32,922 - +1.6 32,922 - -1.8 32,922 - +0.9 32,922 - -2.5 32,922 - -0.9 32,922 - -0.8 32,922 - +0.2 32,922 - -0.6 32,922 - +1.0 32,922 - -0.7 32,922 - -0.1 32,922 - +1.2 32,922 - -0.5 33,020 + EX31_RS21450 0.12 +1.0 33,021 - EX31_RS21450 0.12 +0.0 33,046 + EX31_RS21450 0.15 +0.2 33,046 + EX31_RS21450 0.15 -1.6 33,047 - EX31_RS21450 0.15 +0.4 33,112 - EX31_RS21450 0.23 +0.1 33,145 + EX31_RS21450 0.27 +0.7 33,146 - EX31_RS21450 0.27 -0.6 33,146 - EX31_RS21450 0.27 -0.6 33,320 + EX31_RS21450 0.47 -2.9 33,320 + EX31_RS21450 0.47 -1.1 33,321 - EX31_RS21450 0.48 +1.4 33,421 - EX31_RS21450 0.59 -1.5 33,534 + EX31_RS21450 0.73 -1.1 33,534 + EX31_RS21450 0.73 -2.5 33,534 + EX31_RS21450 0.73 +1.1 33,534 + EX31_RS21450 0.73 +1.6 33,534 + EX31_RS21450 0.73 +0.2 33,535 - EX31_RS21450 0.73 +0.6 33,535 - EX31_RS21450 0.73 +1.3 33,535 - EX31_RS21450 0.73 +0.8 33,535 - EX31_RS21450 0.73 +0.4 33,535 - EX31_RS21450 0.73 -0.5 33,535 - EX31_RS21450 0.73 -0.4 33,547 - EX31_RS21450 0.74 +1.8 33,547 - EX31_RS21450 0.74 -0.4 33,609 + EX31_RS21450 0.82 -0.2 33,609 + EX31_RS21450 0.82 -0.9 33,609 + EX31_RS21450 0.82 +1.2 33,610 - EX31_RS21450 0.82 +0.5 33,610 - EX31_RS21450 0.82 +0.2 33,610 - EX31_RS21450 0.82 +3.1 33,610 - EX31_RS21450 0.82 -0.9 33,610 - EX31_RS21450 0.82 +0.8 33,626 + EX31_RS21450 0.84 -1.5 33,626 + EX31_RS21450 0.84 +0.3 33,626 + EX31_RS21450 0.84 +0.0 33,627 - EX31_RS21450 0.84 +0.6 33,627 - EX31_RS21450 0.84 -0.5 33,638 - EX31_RS21450 0.85 -0.2 33,638 - EX31_RS21450 0.85 -0.0 33,665 - EX31_RS21450 0.88 +0.5 33,665 - EX31_RS21450 0.88 -1.2 33,665 - EX31_RS21450 0.88 +1.6 33,697 + -2.4 33,697 + +0.4 33,698 - -0.6 33,698 - -0.8 33,698 - +0.7 33,745 - +0.9 33,745 - -0.2 33,805 - +1.2 33,813 - +1.0 33,816 - +0.4 33,816 - -1.2 33,816 - +1.0 33,816 - -0.2 33,816 - +0.6 33,829 + -0.3 33,858 - +0.8 33,882 + -1.0 33,920 - -2.2 33,967 - EX31_RS21455 0.11 +0.7 33,967 - EX31_RS21455 0.11 +0.8 33,994 + EX31_RS21455 0.14 -1.5 33,994 + EX31_RS21455 0.14 -0.9 33,994 + EX31_RS21455 0.14 +0.1 33,995 - EX31_RS21455 0.14 -0.2 33,995 - EX31_RS21455 0.14 -0.7 33,997 + EX31_RS21455 0.14 +0.8 33,997 + EX31_RS21455 0.14 -0.8 33,998 - EX31_RS21455 0.14 -1.1 33,998 - EX31_RS21455 0.14 +2.8 33,998 - EX31_RS21455 0.14 +0.6 34,096 + EX31_RS21455 0.25 +0.5 34,096 + EX31_RS21455 0.25 +0.2 34,137 + EX31_RS21455 0.29 -0.7 34,137 + EX31_RS21455 0.29 +1.1 34,137 + EX31_RS21455 0.29 +0.3 34,137 + EX31_RS21455 0.29 +0.6 34,137 + EX31_RS21455 0.29 -0.3 34,138 - EX31_RS21455 0.30 +0.6 34,138 - EX31_RS21455 0.30 +0.2 34,170 + EX31_RS21455 0.33 +2.0 34,170 + EX31_RS21455 0.33 +0.3 34,170 + EX31_RS21455 0.33 +0.7 34,170 + EX31_RS21455 0.33 -1.0 34,171 - EX31_RS21455 0.33 +1.0 34,174 + EX31_RS21455 0.34 +0.4 34,174 + EX31_RS21455 0.34 +0.3 34,175 - EX31_RS21455 0.34 +1.5 34,175 - EX31_RS21455 0.34 -0.4 34,175 - EX31_RS21455 0.34 +0.4 34,216 + EX31_RS21455 0.38 -0.6 34,217 - EX31_RS21455 0.38 +0.8 34,404 - EX31_RS21455 0.59 +0.6 34,404 - EX31_RS21455 0.59 +0.1 34,558 + EX31_RS21455 0.76 -0.4 34,558 + EX31_RS21455 0.76 +1.2 34,562 - EX31_RS21455 0.76 -0.4 34,562 - EX31_RS21455 0.76 +0.6 34,562 - EX31_RS21455 0.76 -0.3 34,607 + EX31_RS21455 0.81 +0.2 34,607 + EX31_RS21455 0.81 +0.6 34,607 + EX31_RS21455 0.81 -1.9 34,608 - EX31_RS21455 0.81 -0.9 34,608 - EX31_RS21455 0.81 -1.6 34,608 - EX31_RS21455 0.81 +0.3 34,622 + EX31_RS21455 0.83 -0.8 34,623 - EX31_RS21455 0.83 +1.5 34,623 - EX31_RS21455 0.83 +1.1 34,798 + +0.5 34,859 + -1.0 34,897 + EX31_RS21460 0.10 +1.0 34,897 + EX31_RS21460 0.10 +1.6 34,905 - EX31_RS21460 0.11 +1.0 34,905 - EX31_RS21460 0.11 -0.4 35,036 + EX31_RS21460 0.25 -1.1 35,036 + EX31_RS21460 0.25 +0.2 35,037 - EX31_RS21460 0.26 -1.9 35,037 - EX31_RS21460 0.26 -0.8 35,103 - EX31_RS21460 0.33 -2.6 35,174 - EX31_RS21460 0.41 -1.1 35,174 - EX31_RS21460 0.41 -0.2 35,210 - EX31_RS21460 0.45 -0.4 35,210 - EX31_RS21460 0.45 -0.6 35,210 - EX31_RS21460 0.45 -0.1 35,264 + EX31_RS21460 0.51 -0.4 35,264 + EX31_RS21460 0.51 +0.6 35,264 + EX31_RS21460 0.51 +1.2 35,265 - EX31_RS21460 0.51 -1.9 35,265 - EX31_RS21460 0.51 +0.2 35,265 - EX31_RS21460 0.51 +1.0 35,265 - EX31_RS21460 0.51 -0.9 35,269 - EX31_RS21460 0.51 -0.1 35,435 + EX31_RS21460 0.70 +1.2 35,435 + EX31_RS21460 0.70 -1.4 35,435 + EX31_RS21460 0.70 +0.7 35,435 + EX31_RS21460 0.70 +0.4 35,436 - EX31_RS21460 0.70 -2.0 35,499 + EX31_RS21460 0.77 -1.3 35,499 + EX31_RS21460 0.77 +0.1 35,499 + EX31_RS21460 0.77 -1.6 35,499 + EX31_RS21460 0.77 -1.0 35,499 + EX31_RS21460 0.77 -1.9 35,499 + EX31_RS21460 0.77 +0.3 35,499 + EX31_RS21460 0.77 +0.2 35,499 + EX31_RS21460 0.77 -0.8 35,499 + EX31_RS21460 0.77 -2.1 35,500 - EX31_RS21460 0.77 -1.3 35,500 - EX31_RS21460 0.77 +0.1 35,500 - EX31_RS21460 0.77 -0.9 35,500 - EX31_RS21460 0.77 -1.2 35,500 - EX31_RS21460 0.77 -0.7 35,500 - EX31_RS21460 0.77 +0.4 35,511 + EX31_RS21460 0.78 -1.1 35,549 + EX31_RS21460 0.82 +0.2 35,550 - EX31_RS21460 0.82 +0.9 35,690 + +0.4 35,690 + +1.4 35,690 + -1.8 35,690 + +0.6 35,690 + +1.5 35,690 + -1.1 35,690 + -1.6 35,690 + +0.4 35,690 + -0.3 35,690 + +0.5 35,691 - -3.2 35,691 - -1.5 35,691 - +1.0 35,691 - +1.2 35,691 - -1.5 35,691 - -1.9 35,691 - +1.2 35,691 - +0.5 35,692 + +0.2 35,693 - -0.1 35,693 - -1.6 35,693 - -1.9 35,693 - -1.4 35,693 - -1.4 35,724 + +0.4 35,725 - +1.1 35,725 - -0.2 35,725 - +0.2 35,725 - +0.5 35,725 - +3.2 35,725 - +0.1 35,747 + -2.4 35,747 + +1.2 35,747 + -1.9 35,747 + -2.2 35,747 + +0.4 35,748 - -0.4 35,748 - +0.2 35,748 - +1.9 35,748 - -0.1 35,748 - +0.6
Or see this region's nucleotide sequence