Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19775 and EX31_RS19780 are separated by 90 nucleotides EX31_RS19780 and EX31_RS19785 are separated by 34 nucleotides
EX31_RS19775: EX31_RS19775 - formate/nitrite transporter family protein, at 587,287 to 588,204
_RS19775
EX31_RS19780: EX31_RS19780 - tRNA-Arg, at 588,295 to 588,369
_RS19780
EX31_RS19785: EX31_RS19785 - lipoprotein NlpA, at 588,404 to 589,222
_RS19785
Position (kb) 588
589 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 587.340 kb on + strand at 587.340 kb on + strand at 587.340 kb on + strand at 587.340 kb on + strand at 587.340 kb on + strand at 587.340 kb on + strand at 587.340 kb on + strand at 587.340 kb on + strand at 587.340 kb on + strand at 587.340 kb on + strand at 587.341 kb on - strand at 587.341 kb on - strand at 587.341 kb on - strand at 587.341 kb on - strand at 587.341 kb on - strand at 587.341 kb on - strand at 587.341 kb on - strand at 587.341 kb on - strand at 587.573 kb on - strand, within EX31_RS19775 at 587.574 kb on + strand, within EX31_RS19775 at 587.575 kb on - strand, within EX31_RS19775 at 587.590 kb on - strand, within EX31_RS19775 at 587.590 kb on - strand, within EX31_RS19775 at 587.615 kb on + strand, within EX31_RS19775 at 587.615 kb on + strand, within EX31_RS19775 at 587.616 kb on - strand, within EX31_RS19775 at 587.696 kb on + strand, within EX31_RS19775 at 587.815 kb on - strand, within EX31_RS19775 at 587.815 kb on - strand, within EX31_RS19775 at 587.838 kb on + strand, within EX31_RS19775 at 587.838 kb on + strand, within EX31_RS19775 at 587.838 kb on + strand, within EX31_RS19775 at 587.838 kb on + strand, within EX31_RS19775 at 587.838 kb on + strand, within EX31_RS19775 at 587.838 kb on + strand, within EX31_RS19775 at 587.838 kb on + strand, within EX31_RS19775 at 587.838 kb on + strand, within EX31_RS19775 at 587.838 kb on + strand, within EX31_RS19775 at 587.838 kb on + strand, within EX31_RS19775 at 587.839 kb on - strand, within EX31_RS19775 at 587.839 kb on - strand, within EX31_RS19775 at 587.839 kb on - strand, within EX31_RS19775 at 587.839 kb on - strand, within EX31_RS19775 at 587.839 kb on - strand, within EX31_RS19775 at 587.839 kb on - strand, within EX31_RS19775 at 587.839 kb on - strand, within EX31_RS19775 at 587.839 kb on - strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.941 kb on + strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.942 kb on - strand, within EX31_RS19775 at 587.943 kb on + strand, within EX31_RS19775 at 587.943 kb on + strand, within EX31_RS19775 at 587.943 kb on + strand, within EX31_RS19775 at 587.943 kb on + strand, within EX31_RS19775 at 587.943 kb on + strand, within EX31_RS19775 at 587.943 kb on + strand, within EX31_RS19775 at 587.943 kb on + strand, within EX31_RS19775 at 587.943 kb on + strand, within EX31_RS19775 at 587.943 kb on + strand, within EX31_RS19775 at 587.943 kb on + strand, within EX31_RS19775 at 587.943 kb on + strand, within EX31_RS19775 at 587.944 kb on - strand, within EX31_RS19775 at 587.944 kb on - strand, within EX31_RS19775 at 587.944 kb on - strand, within EX31_RS19775 at 587.998 kb on + strand, within EX31_RS19775 at 587.998 kb on + strand, within EX31_RS19775 at 587.998 kb on + strand, within EX31_RS19775 at 587.999 kb on - strand, within EX31_RS19775 at 588.036 kb on + strand, within EX31_RS19775 at 588.090 kb on + strand, within EX31_RS19775 at 588.091 kb on - strand, within EX31_RS19775 at 588.129 kb on + strand at 588.130 kb on - strand at 588.130 kb on - strand at 588.241 kb on + strand at 588.241 kb on + strand at 588.241 kb on + strand at 588.242 kb on - strand at 588.244 kb on + strand at 588.245 kb on - strand at 588.245 kb on - strand at 588.263 kb on - strand at 588.264 kb on + strand at 588.264 kb on + strand at 588.265 kb on - strand at 588.265 kb on - strand at 588.268 kb on - strand at 588.268 kb on - strand at 588.306 kb on + strand, within EX31_RS19780 at 588.307 kb on - strand, within EX31_RS19780 at 588.307 kb on - strand, within EX31_RS19780 at 588.316 kb on + strand, within EX31_RS19780 at 588.316 kb on + strand, within EX31_RS19780 at 588.316 kb on + strand, within EX31_RS19780 at 588.316 kb on + strand, within EX31_RS19780 at 588.316 kb on + strand, within EX31_RS19780 at 588.316 kb on + strand, within EX31_RS19780 at 588.316 kb on + strand, within EX31_RS19780 at 588.316 kb on + strand, within EX31_RS19780 at 588.316 kb on + strand, within EX31_RS19780 at 588.317 kb on - strand, within EX31_RS19780 at 588.317 kb on - strand, within EX31_RS19780 at 588.317 kb on - strand, within EX31_RS19780 at 588.317 kb on - strand, within EX31_RS19780 at 588.317 kb on - strand, within EX31_RS19780 at 588.319 kb on - strand, within EX31_RS19780 at 588.330 kb on + strand, within EX31_RS19780 at 588.330 kb on + strand, within EX31_RS19780 at 588.337 kb on + strand, within EX31_RS19780 at 588.337 kb on + strand, within EX31_RS19780 at 588.341 kb on + strand, within EX31_RS19780 at 588.342 kb on - strand, within EX31_RS19780 at 588.342 kb on - strand, within EX31_RS19780 at 588.374 kb on + strand at 588.383 kb on + strand at 588.383 kb on + strand at 588.383 kb on + strand at 588.383 kb on + strand at 588.383 kb on + strand at 588.383 kb on + strand at 588.384 kb on - strand at 588.386 kb on + strand at 588.386 kb on + strand at 588.386 kb on + strand at 588.386 kb on + strand at 588.387 kb on - strand at 588.509 kb on - strand, within EX31_RS19785 at 588.509 kb on - strand, within EX31_RS19785 at 588.533 kb on - strand, within EX31_RS19785 at 588.533 kb on - strand, within EX31_RS19785 at 588.533 kb on - strand, within EX31_RS19785 at 588.541 kb on - strand, within EX31_RS19785 at 588.553 kb on + strand, within EX31_RS19785 at 588.553 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.606 kb on + strand, within EX31_RS19785 at 588.607 kb on - strand, within EX31_RS19785 at 588.607 kb on - strand, within EX31_RS19785 at 588.607 kb on - strand, within EX31_RS19785 at 588.607 kb on - strand, within EX31_RS19785 at 588.607 kb on - strand, within EX31_RS19785 at 588.651 kb on - strand, within EX31_RS19785 at 588.682 kb on + strand, within EX31_RS19785 at 588.682 kb on + strand, within EX31_RS19785 at 588.682 kb on + strand, within EX31_RS19785 at 588.682 kb on + strand, within EX31_RS19785 at 588.683 kb on - strand, within EX31_RS19785 at 588.683 kb on - strand, within EX31_RS19785 at 588.686 kb on - strand, within EX31_RS19785 at 588.686 kb on - strand, within EX31_RS19785 at 588.712 kb on + strand, within EX31_RS19785 at 588.795 kb on - strand, within EX31_RS19785 at 588.795 kb on - strand, within EX31_RS19785 at 588.795 kb on - strand, within EX31_RS19785 at 588.795 kb on - strand, within EX31_RS19785 at 588.795 kb on - strand, within EX31_RS19785 at 589.011 kb on - strand, within EX31_RS19785 at 589.011 kb on - strand, within EX31_RS19785 at 589.011 kb on - strand, within EX31_RS19785 at 589.011 kb on - strand, within EX31_RS19785 at 589.050 kb on + strand, within EX31_RS19785 at 589.050 kb on + strand, within EX31_RS19785 at 589.051 kb on - strand, within EX31_RS19785 at 589.051 kb on - strand, within EX31_RS19785 at 589.051 kb on - strand, within EX31_RS19785 at 589.055 kb on - strand, within EX31_RS19785 at 589.123 kb on + strand, within EX31_RS19785 at 589.124 kb on - strand, within EX31_RS19785 at 589.124 kb on - strand, within EX31_RS19785 at 589.124 kb on - strand, within EX31_RS19785 at 589.185 kb on - strand at 589.269 kb on + strand at 589.270 kb on - strand at 589.330 kb on - strand at 589.331 kb on + strand at 589.339 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 587,340 + -1.1 587,340 + -0.0 587,340 + +0.3 587,340 + -0.6 587,340 + -0.0 587,340 + -0.8 587,340 + +2.2 587,340 + +0.4 587,340 + -0.2 587,340 + -0.1 587,341 - +0.1 587,341 - -1.7 587,341 - -0.0 587,341 - +1.7 587,341 - +0.0 587,341 - +2.2 587,341 - +0.6 587,341 - -0.6 587,573 - EX31_RS19775 0.31 +1.2 587,574 + EX31_RS19775 0.31 +0.1 587,575 - EX31_RS19775 0.31 +0.9 587,590 - EX31_RS19775 0.33 -0.2 587,590 - EX31_RS19775 0.33 +1.2 587,615 + EX31_RS19775 0.36 +0.6 587,615 + EX31_RS19775 0.36 -2.4 587,616 - EX31_RS19775 0.36 -0.6 587,696 + EX31_RS19775 0.45 +0.5 587,815 - EX31_RS19775 0.58 -1.4 587,815 - EX31_RS19775 0.58 +3.0 587,838 + EX31_RS19775 0.60 -1.0 587,838 + EX31_RS19775 0.60 -1.4 587,838 + EX31_RS19775 0.60 -0.4 587,838 + EX31_RS19775 0.60 +0.6 587,838 + EX31_RS19775 0.60 -0.5 587,838 + EX31_RS19775 0.60 +0.2 587,838 + EX31_RS19775 0.60 -1.4 587,838 + EX31_RS19775 0.60 -0.4 587,838 + EX31_RS19775 0.60 +0.3 587,838 + EX31_RS19775 0.60 -0.4 587,839 - EX31_RS19775 0.60 -0.0 587,839 - EX31_RS19775 0.60 +0.4 587,839 - EX31_RS19775 0.60 +0.2 587,839 - EX31_RS19775 0.60 +0.9 587,839 - EX31_RS19775 0.60 -0.8 587,839 - EX31_RS19775 0.60 -2.4 587,839 - EX31_RS19775 0.60 +0.0 587,839 - EX31_RS19775 0.60 -0.1 587,941 + EX31_RS19775 0.71 -1.2 587,941 + EX31_RS19775 0.71 -0.6 587,941 + EX31_RS19775 0.71 +0.4 587,941 + EX31_RS19775 0.71 -1.4 587,941 + EX31_RS19775 0.71 -1.4 587,941 + EX31_RS19775 0.71 -0.1 587,941 + EX31_RS19775 0.71 +1.4 587,941 + EX31_RS19775 0.71 +0.3 587,941 + EX31_RS19775 0.71 +2.0 587,941 + EX31_RS19775 0.71 +1.0 587,941 + EX31_RS19775 0.71 +2.5 587,941 + EX31_RS19775 0.71 -0.8 587,941 + EX31_RS19775 0.71 +1.8 587,941 + EX31_RS19775 0.71 -1.1 587,941 + EX31_RS19775 0.71 +0.1 587,941 + EX31_RS19775 0.71 +0.2 587,941 + EX31_RS19775 0.71 +3.5 587,941 + EX31_RS19775 0.71 +0.3 587,941 + EX31_RS19775 0.71 -0.7 587,941 + EX31_RS19775 0.71 +1.2 587,941 + EX31_RS19775 0.71 -0.3 587,941 + EX31_RS19775 0.71 +0.8 587,941 + EX31_RS19775 0.71 +0.2 587,942 - EX31_RS19775 0.71 -1.6 587,942 - EX31_RS19775 0.71 -1.2 587,942 - EX31_RS19775 0.71 +1.4 587,942 - EX31_RS19775 0.71 -1.0 587,942 - EX31_RS19775 0.71 -1.8 587,942 - EX31_RS19775 0.71 +0.4 587,942 - EX31_RS19775 0.71 +1.2 587,942 - EX31_RS19775 0.71 -0.0 587,942 - EX31_RS19775 0.71 -0.4 587,942 - EX31_RS19775 0.71 +1.4 587,942 - EX31_RS19775 0.71 +0.8 587,942 - EX31_RS19775 0.71 -0.5 587,942 - EX31_RS19775 0.71 -0.6 587,942 - EX31_RS19775 0.71 -0.1 587,942 - EX31_RS19775 0.71 -0.4 587,942 - EX31_RS19775 0.71 +1.2 587,942 - EX31_RS19775 0.71 -0.2 587,943 + EX31_RS19775 0.71 -0.1 587,943 + EX31_RS19775 0.71 +0.2 587,943 + EX31_RS19775 0.71 -1.2 587,943 + EX31_RS19775 0.71 +1.8 587,943 + EX31_RS19775 0.71 +0.6 587,943 + EX31_RS19775 0.71 +2.0 587,943 + EX31_RS19775 0.71 +0.8 587,943 + EX31_RS19775 0.71 +0.8 587,943 + EX31_RS19775 0.71 -1.7 587,943 + EX31_RS19775 0.71 +0.5 587,943 + EX31_RS19775 0.71 -0.6 587,944 - EX31_RS19775 0.72 -0.6 587,944 - EX31_RS19775 0.72 -1.1 587,944 - EX31_RS19775 0.72 +1.3 587,998 + EX31_RS19775 0.77 +2.1 587,998 + EX31_RS19775 0.77 +0.6 587,998 + EX31_RS19775 0.77 +0.8 587,999 - EX31_RS19775 0.78 -0.4 588,036 + EX31_RS19775 0.82 -0.6 588,090 + EX31_RS19775 0.87 -0.9 588,091 - EX31_RS19775 0.88 +0.4 588,129 + +1.0 588,130 - -0.6 588,130 - -0.1 588,241 + -0.7 588,241 + -1.0 588,241 + +1.2 588,242 - +0.3 588,244 + -0.2 588,245 - +1.9 588,245 - -1.4 588,263 - -1.4 588,264 + -0.5 588,264 + -0.1 588,265 - -0.8 588,265 - +0.3 588,268 - -2.4 588,268 - -0.4 588,306 + EX31_RS19780 0.15 +1.0 588,307 - EX31_RS19780 0.16 -0.4 588,307 - EX31_RS19780 0.16 +0.6 588,316 + EX31_RS19780 0.28 -0.4 588,316 + EX31_RS19780 0.28 +0.3 588,316 + EX31_RS19780 0.28 -1.8 588,316 + EX31_RS19780 0.28 -1.1 588,316 + EX31_RS19780 0.28 -2.4 588,316 + EX31_RS19780 0.28 -0.5 588,316 + EX31_RS19780 0.28 +0.2 588,316 + EX31_RS19780 0.28 +0.2 588,316 + EX31_RS19780 0.28 -2.6 588,317 - EX31_RS19780 0.29 -0.9 588,317 - EX31_RS19780 0.29 -0.4 588,317 - EX31_RS19780 0.29 -2.6 588,317 - EX31_RS19780 0.29 -1.1 588,317 - EX31_RS19780 0.29 +0.5 588,319 - EX31_RS19780 0.32 -0.9 588,330 + EX31_RS19780 0.47 -0.7 588,330 + EX31_RS19780 0.47 -0.8 588,337 + EX31_RS19780 0.56 -1.0 588,337 + EX31_RS19780 0.56 -2.1 588,341 + EX31_RS19780 0.61 -1.9 588,342 - EX31_RS19780 0.63 -1.2 588,342 - EX31_RS19780 0.63 -1.8 588,374 + +0.2 588,383 + -0.2 588,383 + +0.2 588,383 + -0.7 588,383 + -0.6 588,383 + -0.8 588,383 + -0.8 588,384 - -0.8 588,386 + +0.1 588,386 + +0.8 588,386 + -0.7 588,386 + +0.2 588,387 - -1.4 588,509 - EX31_RS19785 0.13 +0.1 588,509 - EX31_RS19785 0.13 +1.2 588,533 - EX31_RS19785 0.16 +2.8 588,533 - EX31_RS19785 0.16 -0.6 588,533 - EX31_RS19785 0.16 +0.1 588,541 - EX31_RS19785 0.17 -0.5 588,553 + EX31_RS19785 0.18 +2.2 588,553 + EX31_RS19785 0.18 +1.5 588,606 + EX31_RS19785 0.25 -1.2 588,606 + EX31_RS19785 0.25 -1.9 588,606 + EX31_RS19785 0.25 +1.5 588,606 + EX31_RS19785 0.25 +0.4 588,606 + EX31_RS19785 0.25 -0.6 588,606 + EX31_RS19785 0.25 +1.2 588,606 + EX31_RS19785 0.25 -0.1 588,606 + EX31_RS19785 0.25 +1.2 588,606 + EX31_RS19785 0.25 -0.7 588,606 + EX31_RS19785 0.25 -0.3 588,606 + EX31_RS19785 0.25 -2.1 588,606 + EX31_RS19785 0.25 +0.6 588,606 + EX31_RS19785 0.25 +1.2 588,606 + EX31_RS19785 0.25 -0.6 588,606 + EX31_RS19785 0.25 -0.8 588,606 + EX31_RS19785 0.25 +0.2 588,606 + EX31_RS19785 0.25 +0.7 588,606 + EX31_RS19785 0.25 +0.8 588,607 - EX31_RS19785 0.25 -0.4 588,607 - EX31_RS19785 0.25 +1.5 588,607 - EX31_RS19785 0.25 -0.9 588,607 - EX31_RS19785 0.25 +0.8 588,607 - EX31_RS19785 0.25 +0.0 588,651 - EX31_RS19785 0.30 -0.4 588,682 + EX31_RS19785 0.34 -0.2 588,682 + EX31_RS19785 0.34 -2.0 588,682 + EX31_RS19785 0.34 -1.0 588,682 + EX31_RS19785 0.34 -0.8 588,683 - EX31_RS19785 0.34 +0.2 588,683 - EX31_RS19785 0.34 -2.2 588,686 - EX31_RS19785 0.34 +1.5 588,686 - EX31_RS19785 0.34 +0.1 588,712 + EX31_RS19785 0.38 +1.0 588,795 - EX31_RS19785 0.48 -0.1 588,795 - EX31_RS19785 0.48 +0.2 588,795 - EX31_RS19785 0.48 -0.4 588,795 - EX31_RS19785 0.48 +0.5 588,795 - EX31_RS19785 0.48 -0.2 589,011 - EX31_RS19785 0.74 +0.5 589,011 - EX31_RS19785 0.74 +0.2 589,011 - EX31_RS19785 0.74 +1.0 589,011 - EX31_RS19785 0.74 +0.8 589,050 + EX31_RS19785 0.79 +0.2 589,050 + EX31_RS19785 0.79 -0.1 589,051 - EX31_RS19785 0.79 +0.2 589,051 - EX31_RS19785 0.79 +1.2 589,051 - EX31_RS19785 0.79 +0.6 589,055 - EX31_RS19785 0.79 -0.3 589,123 + EX31_RS19785 0.88 +0.6 589,124 - EX31_RS19785 0.88 +0.2 589,124 - EX31_RS19785 0.88 +0.7 589,124 - EX31_RS19785 0.88 +0.2 589,185 - +0.2 589,269 + +0.2 589,270 - +0.6 589,330 - +1.0 589,331 + -0.8 589,339 - -0.8
Or see this region's nucleotide sequence