Strain Fitness in Rahnella sp. WP5 around EX31_RS18850

Experiment: Sucrose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS18840 and EX31_RS18845 are separated by 9 nucleotidesEX31_RS18845 and EX31_RS18850 are separated by 6 nucleotidesEX31_RS18850 and EX31_RS18855 are separated by 2 nucleotides EX31_RS18840: EX31_RS18840 - 3-isopropylmalate dehydratase large subunit, at 353,710 to 355,116 _RS18840 EX31_RS18845: EX31_RS18845 - 3-isopropylmalate dehydratase small subunit, at 355,126 to 355,734 _RS18845 EX31_RS18850: EX31_RS18850 - LysR family transcriptional regulator, at 355,741 to 356,655 _RS18850 EX31_RS18855: EX31_RS18855 - endonuclease, at 356,658 to 357,770 _RS18855 Position (kb) 355 356 357Strain fitness (log2 ratio) -2 -1 0 1 2 3at 354.899 kb on + strand, within EX31_RS18840at 354.900 kb on - strand, within EX31_RS18840at 354.903 kb on + strand, within EX31_RS18840at 355.114 kb on + strandat 355.137 kb on + strandat 355.137 kb on + strandat 355.137 kb on + strandat 355.138 kb on - strandat 355.138 kb on - strandat 355.138 kb on - strandat 355.138 kb on - strandat 355.138 kb on - strandat 355.140 kb on + strandat 355.141 kb on - strandat 355.238 kb on + strand, within EX31_RS18845at 355.299 kb on + strand, within EX31_RS18845at 355.299 kb on + strand, within EX31_RS18845at 355.386 kb on - strand, within EX31_RS18845at 355.408 kb on - strand, within EX31_RS18845at 355.476 kb on + strand, within EX31_RS18845at 355.476 kb on + strand, within EX31_RS18845at 355.476 kb on + strand, within EX31_RS18845at 355.476 kb on + strand, within EX31_RS18845at 355.477 kb on - strand, within EX31_RS18845at 355.477 kb on - strand, within EX31_RS18845at 355.477 kb on - strand, within EX31_RS18845at 355.477 kb on - strand, within EX31_RS18845at 355.623 kb on + strand, within EX31_RS18845at 355.659 kb on + strand, within EX31_RS18845at 355.660 kb on - strand, within EX31_RS18845at 355.732 kb on + strandat 355.736 kb on - strandat 355.736 kb on - strandat 355.952 kb on - strand, within EX31_RS18850at 355.952 kb on - strand, within EX31_RS18850at 355.952 kb on - strand, within EX31_RS18850at 355.952 kb on - strand, within EX31_RS18850at 355.952 kb on - strand, within EX31_RS18850at 355.952 kb on - strand, within EX31_RS18850at 355.952 kb on - strand, within EX31_RS18850at 355.954 kb on + strand, within EX31_RS18850at 355.954 kb on + strand, within EX31_RS18850at 355.954 kb on + strand, within EX31_RS18850at 355.955 kb on - strand, within EX31_RS18850at 355.968 kb on + strand, within EX31_RS18850at 356.123 kb on + strand, within EX31_RS18850at 356.123 kb on + strand, within EX31_RS18850at 356.123 kb on + strand, within EX31_RS18850at 356.123 kb on + strand, within EX31_RS18850at 356.177 kb on + strand, within EX31_RS18850at 356.177 kb on + strand, within EX31_RS18850at 356.188 kb on + strand, within EX31_RS18850at 356.189 kb on - strand, within EX31_RS18850at 356.189 kb on - strand, within EX31_RS18850at 356.189 kb on - strand, within EX31_RS18850at 356.189 kb on - strand, within EX31_RS18850at 356.349 kb on + strand, within EX31_RS18850at 356.350 kb on - strand, within EX31_RS18850at 356.350 kb on - strand, within EX31_RS18850at 356.350 kb on - strand, within EX31_RS18850at 356.350 kb on - strand, within EX31_RS18850at 356.350 kb on - strand, within EX31_RS18850at 356.350 kb on - strand, within EX31_RS18850at 356.350 kb on - strand, within EX31_RS18850at 356.350 kb on - strand, within EX31_RS18850at 356.350 kb on - strand, within EX31_RS18850at 356.540 kb on + strand, within EX31_RS18850at 356.541 kb on - strand, within EX31_RS18850at 356.614 kb on + strandat 356.614 kb on + strandat 356.614 kb on + strandat 356.615 kb on - strandat 356.615 kb on - strandat 356.615 kb on - strandat 356.615 kb on - strandat 356.615 kb on - strandat 356.615 kb on - strandat 356.615 kb on - strandat 356.668 kb on + strandat 356.926 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.947 kb on + strand, within EX31_RS18855at 356.948 kb on - strand, within EX31_RS18855at 356.948 kb on - strand, within EX31_RS18855at 356.948 kb on - strand, within EX31_RS18855at 356.948 kb on - strand, within EX31_RS18855at 356.948 kb on - strand, within EX31_RS18855at 356.948 kb on - strand, within EX31_RS18855at 356.948 kb on - strand, within EX31_RS18855at 356.948 kb on - strand, within EX31_RS18855at 356.948 kb on - strand, within EX31_RS18855at 357.203 kb on + strand, within EX31_RS18855at 357.203 kb on + strand, within EX31_RS18855at 357.203 kb on + strand, within EX31_RS18855at 357.203 kb on + strand, within EX31_RS18855at 357.204 kb on - strand, within EX31_RS18855at 357.204 kb on - strand, within EX31_RS18855at 357.230 kb on - strand, within EX31_RS18855at 357.230 kb on - strand, within EX31_RS18855at 357.265 kb on + strand, within EX31_RS18855at 357.265 kb on + strand, within EX31_RS18855at 357.266 kb on - strand, within EX31_RS18855at 357.266 kb on - strand, within EX31_RS18855at 357.275 kb on + strand, within EX31_RS18855at 357.275 kb on + strand, within EX31_RS18855at 357.276 kb on - strand, within EX31_RS18855at 357.276 kb on - strand, within EX31_RS18855at 357.411 kb on + strand, within EX31_RS18855at 357.518 kb on + strand, within EX31_RS18855at 357.518 kb on + strand, within EX31_RS18855at 357.519 kb on - strand, within EX31_RS18855at 357.519 kb on - strand, within EX31_RS18855at 357.520 kb on + strand, within EX31_RS18855at 357.520 kb on + strand, within EX31_RS18855at 357.521 kb on - strand, within EX31_RS18855at 357.521 kb on - strand, within EX31_RS18855at 357.655 kb on - strand, within EX31_RS18855at 357.655 kb on - strand, within EX31_RS18855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
remove
354,899 + EX31_RS18840 0.85 -0.3
354,900 - EX31_RS18840 0.85 -1.3
354,903 + EX31_RS18840 0.85 +0.6
355,114 + -0.2
355,137 + +1.2
355,137 + +1.5
355,137 + -1.7
355,138 - -0.8
355,138 - -0.4
355,138 - +0.5
355,138 - +0.2
355,138 - +0.8
355,140 + +1.6
355,141 - +0.2
355,238 + EX31_RS18845 0.18 -0.4
355,299 + EX31_RS18845 0.28 -0.4
355,299 + EX31_RS18845 0.28 -2.7
355,386 - EX31_RS18845 0.43 +0.7
355,408 - EX31_RS18845 0.46 -1.0
355,476 + EX31_RS18845 0.57 +0.5
355,476 + EX31_RS18845 0.57 -0.6
355,476 + EX31_RS18845 0.57 -1.6
355,476 + EX31_RS18845 0.57 -0.5
355,477 - EX31_RS18845 0.58 -0.4
355,477 - EX31_RS18845 0.58 -2.1
355,477 - EX31_RS18845 0.58 +1.8
355,477 - EX31_RS18845 0.58 +0.4
355,623 + EX31_RS18845 0.82 -1.8
355,659 + EX31_RS18845 0.88 +0.0
355,660 - EX31_RS18845 0.88 -0.8
355,732 + +1.2
355,736 - +0.4
355,736 - +0.2
355,952 - EX31_RS18850 0.23 +0.7
355,952 - EX31_RS18850 0.23 +0.5
355,952 - EX31_RS18850 0.23 +0.1
355,952 - EX31_RS18850 0.23 -0.2
355,952 - EX31_RS18850 0.23 +0.1
355,952 - EX31_RS18850 0.23 +2.2
355,952 - EX31_RS18850 0.23 -0.4
355,954 + EX31_RS18850 0.23 +2.8
355,954 + EX31_RS18850 0.23 +0.4
355,954 + EX31_RS18850 0.23 +2.5
355,955 - EX31_RS18850 0.23 +0.7
355,968 + EX31_RS18850 0.25 -0.2
356,123 + EX31_RS18850 0.42 -1.8
356,123 + EX31_RS18850 0.42 -1.8
356,123 + EX31_RS18850 0.42 +0.3
356,123 + EX31_RS18850 0.42 -0.1
356,177 + EX31_RS18850 0.48 +0.6
356,177 + EX31_RS18850 0.48 +1.2
356,188 + EX31_RS18850 0.49 +1.2
356,189 - EX31_RS18850 0.49 +0.5
356,189 - EX31_RS18850 0.49 +1.8
356,189 - EX31_RS18850 0.49 -1.4
356,189 - EX31_RS18850 0.49 +1.0
356,349 + EX31_RS18850 0.66 +0.6
356,350 - EX31_RS18850 0.67 +2.2
356,350 - EX31_RS18850 0.67 +1.8
356,350 - EX31_RS18850 0.67 -0.2
356,350 - EX31_RS18850 0.67 +1.2
356,350 - EX31_RS18850 0.67 -1.8
356,350 - EX31_RS18850 0.67 -1.7
356,350 - EX31_RS18850 0.67 +1.2
356,350 - EX31_RS18850 0.67 +0.3
356,350 - EX31_RS18850 0.67 -1.4
356,540 + EX31_RS18850 0.87 +1.5
356,541 - EX31_RS18850 0.87 +0.8
356,614 + -1.0
356,614 + -2.1
356,614 + -0.0
356,615 - +3.2
356,615 - -0.8
356,615 - -0.2
356,615 - -0.4
356,615 - -1.3
356,615 - -1.9
356,615 - -0.6
356,668 + +2.4
356,926 + EX31_RS18855 0.24 -0.6
356,947 + EX31_RS18855 0.26 -0.8
356,947 + EX31_RS18855 0.26 -0.4
356,947 + EX31_RS18855 0.26 +0.0
356,947 + EX31_RS18855 0.26 +0.2
356,947 + EX31_RS18855 0.26 -1.1
356,947 + EX31_RS18855 0.26 -2.5
356,947 + EX31_RS18855 0.26 -0.4
356,947 + EX31_RS18855 0.26 -0.2
356,947 + EX31_RS18855 0.26 +0.8
356,947 + EX31_RS18855 0.26 -0.5
356,947 + EX31_RS18855 0.26 +1.7
356,947 + EX31_RS18855 0.26 +2.8
356,947 + EX31_RS18855 0.26 -1.1
356,947 + EX31_RS18855 0.26 +0.9
356,947 + EX31_RS18855 0.26 +0.1
356,948 - EX31_RS18855 0.26 +1.2
356,948 - EX31_RS18855 0.26 +0.0
356,948 - EX31_RS18855 0.26 -0.8
356,948 - EX31_RS18855 0.26 +0.7
356,948 - EX31_RS18855 0.26 -1.8
356,948 - EX31_RS18855 0.26 -0.7
356,948 - EX31_RS18855 0.26 +1.2
356,948 - EX31_RS18855 0.26 +0.1
356,948 - EX31_RS18855 0.26 +1.8
357,203 + EX31_RS18855 0.49 +1.2
357,203 + EX31_RS18855 0.49 -1.1
357,203 + EX31_RS18855 0.49 -0.4
357,203 + EX31_RS18855 0.49 +0.2
357,204 - EX31_RS18855 0.49 +0.2
357,204 - EX31_RS18855 0.49 +0.5
357,230 - EX31_RS18855 0.51 +0.2
357,230 - EX31_RS18855 0.51 -0.7
357,265 + EX31_RS18855 0.55 +2.6
357,265 + EX31_RS18855 0.55 +0.8
357,266 - EX31_RS18855 0.55 -1.4
357,266 - EX31_RS18855 0.55 -0.2
357,275 + EX31_RS18855 0.55 +1.2
357,275 + EX31_RS18855 0.55 -0.1
357,276 - EX31_RS18855 0.56 -1.1
357,276 - EX31_RS18855 0.56 +0.2
357,411 + EX31_RS18855 0.68 +1.2
357,518 + EX31_RS18855 0.77 +0.2
357,518 + EX31_RS18855 0.77 -0.2
357,519 - EX31_RS18855 0.77 +0.2
357,519 - EX31_RS18855 0.77 -0.5
357,520 + EX31_RS18855 0.77 +0.5
357,520 + EX31_RS18855 0.77 -0.3
357,521 - EX31_RS18855 0.78 -0.8
357,521 - EX31_RS18855 0.78 -0.2
357,655 - EX31_RS18855 0.90 +1.7
357,655 - EX31_RS18855 0.90 +1.0

Or see this region's nucleotide sequence