Strain Fitness in Rahnella sp. WP5 around EX31_RS18655

Experiment: Sucrose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS18645 and EX31_RS18650 overlap by 1 nucleotidesEX31_RS18650 and EX31_RS18655 are separated by 227 nucleotidesEX31_RS18655 and EX31_RS18660 are separated by 174 nucleotides EX31_RS18645: EX31_RS18645 - arginine ABC transporter permease ArtQ, at 307,568 to 308,284 _RS18645 EX31_RS18650: EX31_RS18650 - arginine ABC transporter permease ArtM, at 308,284 to 308,952 _RS18650 EX31_RS18655: EX31_RS18655 - arginine ABC transporter substrate-binding protein, at 309,180 to 309,914 _RS18655 EX31_RS18660: EX31_RS18660 - cytidine deaminase, at 310,089 to 310,973 _RS18660 Position (kb) 309 310Strain fitness (log2 ratio) -2 -1 0 1 2at 308.180 kb on + strand, within EX31_RS18645at 308.180 kb on + strand, within EX31_RS18645at 308.180 kb on + strand, within EX31_RS18645at 308.180 kb on + strand, within EX31_RS18645at 308.197 kb on + strand, within EX31_RS18645at 308.197 kb on + strand, within EX31_RS18645at 308.197 kb on + strand, within EX31_RS18645at 308.197 kb on + strand, within EX31_RS18645at 308.197 kb on + strand, within EX31_RS18645at 308.198 kb on - strand, within EX31_RS18645at 308.201 kb on + strand, within EX31_RS18645at 308.201 kb on + strand, within EX31_RS18645at 308.201 kb on + strand, within EX31_RS18645at 308.201 kb on + strand, within EX31_RS18645at 308.201 kb on + strand, within EX31_RS18645at 308.201 kb on + strand, within EX31_RS18645at 308.201 kb on + strand, within EX31_RS18645at 308.201 kb on + strand, within EX31_RS18645at 308.297 kb on + strandat 308.297 kb on + strandat 308.434 kb on + strand, within EX31_RS18650at 308.434 kb on + strand, within EX31_RS18650at 308.434 kb on + strand, within EX31_RS18650at 308.434 kb on + strand, within EX31_RS18650at 308.434 kb on + strand, within EX31_RS18650at 308.434 kb on + strand, within EX31_RS18650at 308.434 kb on + strand, within EX31_RS18650at 308.434 kb on + strand, within EX31_RS18650at 308.434 kb on + strand, within EX31_RS18650at 308.434 kb on + strand, within EX31_RS18650at 308.434 kb on + strand, within EX31_RS18650at 308.485 kb on + strand, within EX31_RS18650at 308.596 kb on + strand, within EX31_RS18650at 308.597 kb on - strand, within EX31_RS18650at 308.598 kb on + strand, within EX31_RS18650at 308.631 kb on + strand, within EX31_RS18650at 308.631 kb on + strand, within EX31_RS18650at 308.670 kb on + strand, within EX31_RS18650at 308.670 kb on + strand, within EX31_RS18650at 308.670 kb on + strand, within EX31_RS18650at 308.670 kb on + strand, within EX31_RS18650at 308.670 kb on + strand, within EX31_RS18650at 308.760 kb on + strand, within EX31_RS18650at 308.760 kb on + strand, within EX31_RS18650at 308.760 kb on + strand, within EX31_RS18650at 308.766 kb on + strand, within EX31_RS18650at 308.766 kb on + strand, within EX31_RS18650at 308.779 kb on + strand, within EX31_RS18650at 308.779 kb on + strand, within EX31_RS18650at 308.779 kb on + strand, within EX31_RS18650at 308.779 kb on + strand, within EX31_RS18650at 308.779 kb on + strand, within EX31_RS18650at 308.780 kb on - strand, within EX31_RS18650at 308.780 kb on - strand, within EX31_RS18650at 308.824 kb on + strand, within EX31_RS18650at 308.824 kb on + strand, within EX31_RS18650at 308.824 kb on + strand, within EX31_RS18650at 308.824 kb on + strand, within EX31_RS18650at 308.824 kb on + strand, within EX31_RS18650at 308.824 kb on + strand, within EX31_RS18650at 308.824 kb on + strand, within EX31_RS18650at 308.824 kb on + strand, within EX31_RS18650at 308.824 kb on + strand, within EX31_RS18650at 308.824 kb on + strand, within EX31_RS18650at 308.825 kb on - strand, within EX31_RS18650at 308.825 kb on - strand, within EX31_RS18650at 308.832 kb on + strand, within EX31_RS18650at 308.832 kb on + strand, within EX31_RS18650at 308.832 kb on + strand, within EX31_RS18650at 308.832 kb on + strand, within EX31_RS18650at 308.832 kb on + strand, within EX31_RS18650at 308.832 kb on + strand, within EX31_RS18650at 308.833 kb on - strand, within EX31_RS18650at 308.836 kb on + strand, within EX31_RS18650at 308.836 kb on + strand, within EX31_RS18650at 308.836 kb on + strand, within EX31_RS18650at 308.836 kb on + strand, within EX31_RS18650at 308.836 kb on + strand, within EX31_RS18650at 308.836 kb on + strand, within EX31_RS18650at 308.836 kb on + strand, within EX31_RS18650at 308.836 kb on + strand, within EX31_RS18650at 308.837 kb on - strand, within EX31_RS18650at 308.849 kb on + strand, within EX31_RS18650at 308.849 kb on + strand, within EX31_RS18650at 308.849 kb on + strand, within EX31_RS18650at 308.872 kb on + strand, within EX31_RS18650at 308.873 kb on - strand, within EX31_RS18650at 309.139 kb on - strandat 309.271 kb on - strand, within EX31_RS18655at 309.287 kb on + strand, within EX31_RS18655at 309.288 kb on - strand, within EX31_RS18655at 309.288 kb on - strand, within EX31_RS18655at 309.344 kb on + strand, within EX31_RS18655at 309.365 kb on + strand, within EX31_RS18655at 309.431 kb on + strand, within EX31_RS18655at 309.431 kb on + strand, within EX31_RS18655at 309.465 kb on - strand, within EX31_RS18655at 309.489 kb on + strand, within EX31_RS18655at 309.489 kb on + strand, within EX31_RS18655at 309.490 kb on - strand, within EX31_RS18655at 309.492 kb on + strand, within EX31_RS18655at 309.540 kb on - strand, within EX31_RS18655at 309.540 kb on - strand, within EX31_RS18655at 309.598 kb on - strand, within EX31_RS18655at 309.598 kb on - strand, within EX31_RS18655at 309.626 kb on + strand, within EX31_RS18655at 309.645 kb on + strand, within EX31_RS18655at 309.645 kb on + strand, within EX31_RS18655at 309.764 kb on + strand, within EX31_RS18655at 309.765 kb on - strand, within EX31_RS18655at 309.777 kb on + strand, within EX31_RS18655at 309.815 kb on + strand, within EX31_RS18655at 309.815 kb on + strand, within EX31_RS18655at 309.815 kb on + strand, within EX31_RS18655at 309.816 kb on - strand, within EX31_RS18655at 309.818 kb on + strand, within EX31_RS18655at 309.867 kb on - strandat 309.965 kb on + strandat 309.979 kb on + strandat 309.979 kb on + strandat 309.980 kb on - strandat 309.998 kb on + strandat 309.999 kb on - strandat 309.999 kb on - strandat 309.999 kb on - strandat 310.001 kb on + strandat 310.001 kb on + strandat 310.002 kb on - strandat 310.002 kb on - strandat 310.002 kb on - strandat 310.002 kb on - strandat 310.049 kb on + strandat 310.050 kb on - strandat 310.065 kb on - strandat 310.088 kb on + strandat 310.210 kb on + strand, within EX31_RS18660at 310.284 kb on - strand, within EX31_RS18660at 310.284 kb on - strand, within EX31_RS18660at 310.289 kb on + strand, within EX31_RS18660at 310.290 kb on - strand, within EX31_RS18660at 310.493 kb on + strand, within EX31_RS18660at 310.494 kb on - strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.549 kb on + strand, within EX31_RS18660at 310.550 kb on - strand, within EX31_RS18660at 310.550 kb on - strand, within EX31_RS18660at 310.550 kb on - strand, within EX31_RS18660at 310.550 kb on - strand, within EX31_RS18660at 310.550 kb on - strand, within EX31_RS18660at 310.550 kb on - strand, within EX31_RS18660at 310.638 kb on + strand, within EX31_RS18660at 310.707 kb on + strand, within EX31_RS18660at 310.707 kb on + strand, within EX31_RS18660at 310.707 kb on + strand, within EX31_RS18660at 310.712 kb on + strand, within EX31_RS18660at 310.713 kb on - strand, within EX31_RS18660at 310.713 kb on - strand, within EX31_RS18660at 310.835 kb on + strand, within EX31_RS18660at 310.836 kb on - strand, within EX31_RS18660at 310.836 kb on - strand, within EX31_RS18660at 310.836 kb on - strand, within EX31_RS18660at 310.836 kb on - strand, within EX31_RS18660at 310.836 kb on - strand, within EX31_RS18660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
remove
308,180 + EX31_RS18645 0.85 -0.2
308,180 + EX31_RS18645 0.85 -0.3
308,180 + EX31_RS18645 0.85 -1.2
308,180 + EX31_RS18645 0.85 -2.0
308,197 + EX31_RS18645 0.88 -1.3
308,197 + EX31_RS18645 0.88 -2.2
308,197 + EX31_RS18645 0.88 -0.3
308,197 + EX31_RS18645 0.88 -1.3
308,197 + EX31_RS18645 0.88 +0.8
308,198 - EX31_RS18645 0.88 -0.4
308,201 + EX31_RS18645 0.88 +0.2
308,201 + EX31_RS18645 0.88 +1.2
308,201 + EX31_RS18645 0.88 -0.8
308,201 + EX31_RS18645 0.88 -0.8
308,201 + EX31_RS18645 0.88 +1.7
308,201 + EX31_RS18645 0.88 -0.2
308,201 + EX31_RS18645 0.88 +0.9
308,201 + EX31_RS18645 0.88 -0.6
308,297 + +1.6
308,297 + +1.2
308,434 + EX31_RS18650 0.22 -0.9
308,434 + EX31_RS18650 0.22 -1.6
308,434 + EX31_RS18650 0.22 -0.3
308,434 + EX31_RS18650 0.22 -0.3
308,434 + EX31_RS18650 0.22 -0.2
308,434 + EX31_RS18650 0.22 -0.8
308,434 + EX31_RS18650 0.22 -0.7
308,434 + EX31_RS18650 0.22 -0.8
308,434 + EX31_RS18650 0.22 +1.2
308,434 + EX31_RS18650 0.22 +1.6
308,434 + EX31_RS18650 0.22 +0.6
308,485 + EX31_RS18650 0.30 -1.0
308,596 + EX31_RS18650 0.47 -1.0
308,597 - EX31_RS18650 0.47 +2.2
308,598 + EX31_RS18650 0.47 -1.0
308,631 + EX31_RS18650 0.52 -0.4
308,631 + EX31_RS18650 0.52 +0.2
308,670 + EX31_RS18650 0.58 -0.5
308,670 + EX31_RS18650 0.58 -1.8
308,670 + EX31_RS18650 0.58 -0.2
308,670 + EX31_RS18650 0.58 -1.4
308,670 + EX31_RS18650 0.58 -0.3
308,760 + EX31_RS18650 0.71 +2.2
308,760 + EX31_RS18650 0.71 -0.6
308,760 + EX31_RS18650 0.71 +1.0
308,766 + EX31_RS18650 0.72 +2.7
308,766 + EX31_RS18650 0.72 +0.2
308,779 + EX31_RS18650 0.74 -0.9
308,779 + EX31_RS18650 0.74 +0.2
308,779 + EX31_RS18650 0.74 +0.2
308,779 + EX31_RS18650 0.74 +0.1
308,779 + EX31_RS18650 0.74 +0.2
308,780 - EX31_RS18650 0.74 +0.6
308,780 - EX31_RS18650 0.74 -1.8
308,824 + EX31_RS18650 0.81 -1.3
308,824 + EX31_RS18650 0.81 +0.2
308,824 + EX31_RS18650 0.81 +1.7
308,824 + EX31_RS18650 0.81 -0.1
308,824 + EX31_RS18650 0.81 -0.7
308,824 + EX31_RS18650 0.81 +1.4
308,824 + EX31_RS18650 0.81 +1.7
308,824 + EX31_RS18650 0.81 -0.6
308,824 + EX31_RS18650 0.81 +1.5
308,824 + EX31_RS18650 0.81 -0.4
308,825 - EX31_RS18650 0.81 +1.2
308,825 - EX31_RS18650 0.81 +0.2
308,832 + EX31_RS18650 0.82 +0.3
308,832 + EX31_RS18650 0.82 +0.3
308,832 + EX31_RS18650 0.82 -2.3
308,832 + EX31_RS18650 0.82 -1.5
308,832 + EX31_RS18650 0.82 -0.4
308,832 + EX31_RS18650 0.82 -1.4
308,833 - EX31_RS18650 0.82 +1.2
308,836 + EX31_RS18650 0.83 -0.4
308,836 + EX31_RS18650 0.83 +0.6
308,836 + EX31_RS18650 0.83 +1.2
308,836 + EX31_RS18650 0.83 -0.8
308,836 + EX31_RS18650 0.83 -0.8
308,836 + EX31_RS18650 0.83 +0.9
308,836 + EX31_RS18650 0.83 -1.6
308,836 + EX31_RS18650 0.83 -0.6
308,837 - EX31_RS18650 0.83 -0.4
308,849 + EX31_RS18650 0.84 -0.0
308,849 + EX31_RS18650 0.84 -0.5
308,849 + EX31_RS18650 0.84 -0.0
308,872 + EX31_RS18650 0.88 +0.1
308,873 - EX31_RS18650 0.88 -1.6
309,139 - -0.3
309,271 - EX31_RS18655 0.12 -0.7
309,287 + EX31_RS18655 0.15 -1.4
309,288 - EX31_RS18655 0.15 -2.3
309,288 - EX31_RS18655 0.15 -0.8
309,344 + EX31_RS18655 0.22 +1.2
309,365 + EX31_RS18655 0.25 -0.8
309,431 + EX31_RS18655 0.34 -0.2
309,431 + EX31_RS18655 0.34 +0.3
309,465 - EX31_RS18655 0.39 -1.2
309,489 + EX31_RS18655 0.42 +0.6
309,489 + EX31_RS18655 0.42 +0.2
309,490 - EX31_RS18655 0.42 +0.4
309,492 + EX31_RS18655 0.42 +0.2
309,540 - EX31_RS18655 0.49 +1.6
309,540 - EX31_RS18655 0.49 -1.2
309,598 - EX31_RS18655 0.57 +1.2
309,598 - EX31_RS18655 0.57 -1.7
309,626 + EX31_RS18655 0.61 +0.7
309,645 + EX31_RS18655 0.63 -0.7
309,645 + EX31_RS18655 0.63 +0.6
309,764 + EX31_RS18655 0.79 +1.6
309,765 - EX31_RS18655 0.80 -0.4
309,777 + EX31_RS18655 0.81 -0.2
309,815 + EX31_RS18655 0.86 -1.8
309,815 + EX31_RS18655 0.86 +0.9
309,815 + EX31_RS18655 0.86 -1.2
309,816 - EX31_RS18655 0.87 -0.9
309,818 + EX31_RS18655 0.87 -1.4
309,867 - +0.7
309,965 + -1.4
309,979 + +0.2
309,979 + -0.8
309,980 - +1.5
309,998 + +0.2
309,999 - -1.2
309,999 - +0.5
309,999 - +0.1
310,001 + -0.1
310,001 + -0.6
310,002 - -0.8
310,002 - +0.7
310,002 - +0.6
310,002 - -0.1
310,049 + +0.2
310,050 - +0.8
310,065 - +2.1
310,088 + +1.2
310,210 + EX31_RS18660 0.14 -1.3
310,284 - EX31_RS18660 0.22 -0.4
310,284 - EX31_RS18660 0.22 -1.6
310,289 + EX31_RS18660 0.23 -2.2
310,290 - EX31_RS18660 0.23 -1.3
310,493 + EX31_RS18660 0.46 +1.5
310,494 - EX31_RS18660 0.46 -0.4
310,549 + EX31_RS18660 0.52 +0.6
310,549 + EX31_RS18660 0.52 +0.4
310,549 + EX31_RS18660 0.52 -0.0
310,549 + EX31_RS18660 0.52 -1.6
310,549 + EX31_RS18660 0.52 +0.1
310,549 + EX31_RS18660 0.52 +0.6
310,549 + EX31_RS18660 0.52 -0.2
310,550 - EX31_RS18660 0.52 +1.5
310,550 - EX31_RS18660 0.52 -0.3
310,550 - EX31_RS18660 0.52 +0.5
310,550 - EX31_RS18660 0.52 -0.8
310,550 - EX31_RS18660 0.52 +1.6
310,550 - EX31_RS18660 0.52 -0.1
310,638 + EX31_RS18660 0.62 +0.6
310,707 + EX31_RS18660 0.70 -0.4
310,707 + EX31_RS18660 0.70 +1.2
310,707 + EX31_RS18660 0.70 +1.1
310,712 + EX31_RS18660 0.70 +1.7
310,713 - EX31_RS18660 0.71 +0.4
310,713 - EX31_RS18660 0.71 +0.9
310,835 + EX31_RS18660 0.84 +0.5
310,836 - EX31_RS18660 0.84 +0.0
310,836 - EX31_RS18660 0.84 +0.4
310,836 - EX31_RS18660 0.84 -0.4
310,836 - EX31_RS18660 0.84 -0.2
310,836 - EX31_RS18660 0.84 +1.4

Or see this region's nucleotide sequence