Strain Fitness in Rahnella sp. WP5 around EX31_RS16705

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS16695 and EX31_RS16700 overlap by 4 nucleotidesEX31_RS16700 and EX31_RS16705 are separated by 34 nucleotidesEX31_RS16705 and EX31_RS16710 overlap by 4 nucleotidesEX31_RS16710 and EX31_RS16715 are separated by 4 nucleotides EX31_RS16695: EX31_RS16695 - aromatic amino acid lyase, at 21,617 to 23,161 _RS16695 EX31_RS16700: EX31_RS16700 - ABC transporter substrate-binding protein, at 23,158 to 24,042 _RS16700 EX31_RS16705: EX31_RS16705 - ABC transporter permease, at 24,077 to 24,784 _RS16705 EX31_RS16710: EX31_RS16710 - ABC transporter permease subunit, at 24,781 to 25,431 _RS16710 EX31_RS16715: EX31_RS16715 - ATP-binding cassette domain-containing protein, at 25,436 to 26,530 _RS16715 Position (kb) 24 25Strain fitness (log2 ratio) -2 -1 0 1 2at 23.138 kb on + strandat 23.139 kb on - strandat 23.163 kb on + strandat 23.164 kb on - strandat 23.164 kb on - strandat 23.164 kb on - strandat 23.164 kb on - strandat 23.351 kb on - strand, within EX31_RS16700at 23.351 kb on - strand, within EX31_RS16700at 23.351 kb on - strand, within EX31_RS16700at 23.351 kb on - strand, within EX31_RS16700at 23.493 kb on + strand, within EX31_RS16700at 23.508 kb on - strand, within EX31_RS16700at 23.677 kb on - strand, within EX31_RS16700at 23.765 kb on + strand, within EX31_RS16700at 23.829 kb on + strand, within EX31_RS16700at 23.829 kb on + strand, within EX31_RS16700at 23.830 kb on - strand, within EX31_RS16700at 23.830 kb on - strand, within EX31_RS16700at 23.830 kb on - strand, within EX31_RS16700at 23.830 kb on - strand, within EX31_RS16700at 23.831 kb on + strand, within EX31_RS16700at 23.831 kb on + strand, within EX31_RS16700at 23.831 kb on + strand, within EX31_RS16700at 23.831 kb on + strand, within EX31_RS16700at 23.831 kb on + strand, within EX31_RS16700at 23.831 kb on + strand, within EX31_RS16700at 23.832 kb on - strand, within EX31_RS16700at 23.832 kb on - strand, within EX31_RS16700at 23.832 kb on - strand, within EX31_RS16700at 23.832 kb on - strand, within EX31_RS16700at 23.832 kb on - strand, within EX31_RS16700at 23.832 kb on - strand, within EX31_RS16700at 23.832 kb on - strand, within EX31_RS16700at 23.851 kb on - strand, within EX31_RS16700at 23.851 kb on - strand, within EX31_RS16700at 23.854 kb on - strand, within EX31_RS16700at 23.901 kb on - strand, within EX31_RS16700at 23.904 kb on + strand, within EX31_RS16700at 23.905 kb on - strand, within EX31_RS16700at 23.905 kb on - strand, within EX31_RS16700at 23.950 kb on - strand, within EX31_RS16700at 23.950 kb on - strand, within EX31_RS16700at 23.950 kb on - strand, within EX31_RS16700at 24.073 kb on + strandat 24.074 kb on - strandat 24.129 kb on - strandat 24.171 kb on - strand, within EX31_RS16705at 24.341 kb on + strand, within EX31_RS16705at 24.366 kb on - strand, within EX31_RS16705at 24.456 kb on + strand, within EX31_RS16705at 24.457 kb on - strand, within EX31_RS16705at 24.458 kb on + strand, within EX31_RS16705at 24.518 kb on - strand, within EX31_RS16705at 24.540 kb on - strand, within EX31_RS16705at 24.618 kb on - strand, within EX31_RS16705at 24.618 kb on - strand, within EX31_RS16705at 24.620 kb on + strand, within EX31_RS16705at 24.652 kb on - strand, within EX31_RS16705at 24.652 kb on - strand, within EX31_RS16705at 24.706 kb on - strand, within EX31_RS16705at 24.778 kb on + strandat 24.907 kb on + strand, within EX31_RS16710at 24.907 kb on + strand, within EX31_RS16710at 24.924 kb on + strand, within EX31_RS16710at 25.005 kb on + strand, within EX31_RS16710at 25.006 kb on - strand, within EX31_RS16710at 25.006 kb on - strand, within EX31_RS16710at 25.006 kb on - strand, within EX31_RS16710at 25.189 kb on - strand, within EX31_RS16710at 25.223 kb on - strand, within EX31_RS16710at 25.232 kb on - strand, within EX31_RS16710at 25.264 kb on + strand, within EX31_RS16710at 25.268 kb on - strand, within EX31_RS16710at 25.268 kb on - strand, within EX31_RS16710at 25.268 kb on - strand, within EX31_RS16710at 25.326 kb on + strand, within EX31_RS16710at 25.348 kb on + strand, within EX31_RS16710at 25.367 kb on + strandat 25.368 kb on - strandat 25.390 kb on + strandat 25.414 kb on + strandat 25.544 kb on + strandat 25.545 kb on - strandat 25.607 kb on - strand, within EX31_RS16715at 25.607 kb on - strand, within EX31_RS16715at 25.650 kb on + strand, within EX31_RS16715at 25.651 kb on - strand, within EX31_RS16715at 25.768 kb on + strand, within EX31_RS16715at 25.768 kb on + strand, within EX31_RS16715

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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23,138 + -2.5
23,139 - +1.1
23,163 + -1.7
23,164 - +0.1
23,164 - -1.8
23,164 - -0.1
23,164 - -0.5
23,351 - EX31_RS16700 0.22 +1.1
23,351 - EX31_RS16700 0.22 +0.5
23,351 - EX31_RS16700 0.22 -0.2
23,351 - EX31_RS16700 0.22 -0.5
23,493 + EX31_RS16700 0.38 +0.1
23,508 - EX31_RS16700 0.40 +1.7
23,677 - EX31_RS16700 0.59 +2.1
23,765 + EX31_RS16700 0.69 +1.8
23,829 + EX31_RS16700 0.76 -0.5
23,829 + EX31_RS16700 0.76 +2.3
23,830 - EX31_RS16700 0.76 -0.9
23,830 - EX31_RS16700 0.76 +0.5
23,830 - EX31_RS16700 0.76 +0.1
23,830 - EX31_RS16700 0.76 -0.2
23,831 + EX31_RS16700 0.76 -0.5
23,831 + EX31_RS16700 0.76 -0.2
23,831 + EX31_RS16700 0.76 -0.5
23,831 + EX31_RS16700 0.76 -0.5
23,831 + EX31_RS16700 0.76 -0.5
23,831 + EX31_RS16700 0.76 +0.5
23,832 - EX31_RS16700 0.76 -1.5
23,832 - EX31_RS16700 0.76 +0.8
23,832 - EX31_RS16700 0.76 -0.5
23,832 - EX31_RS16700 0.76 +2.7
23,832 - EX31_RS16700 0.76 -1.2
23,832 - EX31_RS16700 0.76 -1.7
23,832 - EX31_RS16700 0.76 +1.1
23,851 - EX31_RS16700 0.78 -0.9
23,851 - EX31_RS16700 0.78 +0.1
23,854 - EX31_RS16700 0.79 +0.1
23,901 - EX31_RS16700 0.84 +1.1
23,904 + EX31_RS16700 0.84 -0.5
23,905 - EX31_RS16700 0.84 -0.7
23,905 - EX31_RS16700 0.84 -1.0
23,950 - EX31_RS16700 0.89 +0.1
23,950 - EX31_RS16700 0.89 +1.5
23,950 - EX31_RS16700 0.89 +0.2
24,073 + +1.1
24,074 - +0.1
24,129 - -1.5
24,171 - EX31_RS16705 0.13 +1.7
24,341 + EX31_RS16705 0.37 +2.5
24,366 - EX31_RS16705 0.41 +2.1
24,456 + EX31_RS16705 0.54 +0.1
24,457 - EX31_RS16705 0.54 -0.2
24,458 + EX31_RS16705 0.54 -1.1
24,518 - EX31_RS16705 0.62 -0.2
24,540 - EX31_RS16705 0.65 +0.7
24,618 - EX31_RS16705 0.76 +0.8
24,618 - EX31_RS16705 0.76 -0.6
24,620 + EX31_RS16705 0.77 +1.1
24,652 - EX31_RS16705 0.81 +0.5
24,652 - EX31_RS16705 0.81 +0.8
24,706 - EX31_RS16705 0.89 +0.1
24,778 + +0.1
24,907 + EX31_RS16710 0.19 +0.5
24,907 + EX31_RS16710 0.19 +0.8
24,924 + EX31_RS16710 0.22 -0.5
25,005 + EX31_RS16710 0.34 +0.1
25,006 - EX31_RS16710 0.35 -2.2
25,006 - EX31_RS16710 0.35 +2.1
25,006 - EX31_RS16710 0.35 -0.5
25,189 - EX31_RS16710 0.63 +0.1
25,223 - EX31_RS16710 0.68 -1.7
25,232 - EX31_RS16710 0.69 +0.4
25,264 + EX31_RS16710 0.74 +0.1
25,268 - EX31_RS16710 0.75 +0.1
25,268 - EX31_RS16710 0.75 -1.2
25,268 - EX31_RS16710 0.75 +1.1
25,326 + EX31_RS16710 0.84 +1.1
25,348 + EX31_RS16710 0.87 -0.5
25,367 + +2.1
25,368 - -0.9
25,390 + -1.5
25,414 + -0.9
25,544 + -0.5
25,545 - +0.1
25,607 - EX31_RS16715 0.16 -1.2
25,607 - EX31_RS16715 0.16 -0.2
25,650 + EX31_RS16715 0.20 -0.9
25,651 - EX31_RS16715 0.20 -1.2
25,768 + EX31_RS16715 0.30 -2.2
25,768 + EX31_RS16715 0.30 +0.4

Or see this region's nucleotide sequence