Strain Fitness in Rahnella sp. WP5 around EX31_RS15740

Experiment: Sucrose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS15740 and EX31_RS15745 are separated by 27 nucleotidesEX31_RS15745 and EX31_RS15750 overlap by 14 nucleotides EX31_RS15740: EX31_RS15740 - IS3 family transposase, at 74 to 1,248 _RS15740 EX31_RS15745: EX31_RS15745 - hypothetical protein, at 1,276 to 1,935 _RS15745 EX31_RS15750: EX31_RS15750 - site-specific DNA-methyltransferase, at 1,922 to 2,647 _RS15750 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 1.253 kb on + strandat 1.253 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.258 kb on + strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.259 kb on - strandat 1.262 kb on + strandat 1.262 kb on + strandat 1.262 kb on + strandat 1.262 kb on + strandat 1.262 kb on + strandat 1.262 kb on + strandat 1.263 kb on - strandat 1.263 kb on - strandat 1.263 kb on - strandat 1.263 kb on - strandat 1.263 kb on - strandat 1.263 kb on - strandat 1.263 kb on - strandat 1.270 kb on + strandat 1.270 kb on + strandat 1.270 kb on + strandat 1.271 kb on - strandat 1.271 kb on - strandat 1.271 kb on - strandat 1.272 kb on + strandat 1.272 kb on + strandat 1.272 kb on + strandat 1.272 kb on + strandat 1.273 kb on - strandat 1.273 kb on - strandat 1.273 kb on - strandat 1.273 kb on - strandat 1.273 kb on - strandat 1.273 kb on - strandat 1.290 kb on + strandat 1.319 kb on - strandat 1.319 kb on - strandat 1.319 kb on - strandat 1.319 kb on - strandat 1.336 kb on - strandat 1.344 kb on + strand, within EX31_RS15745at 1.345 kb on - strand, within EX31_RS15745at 1.355 kb on + strand, within EX31_RS15745at 1.355 kb on + strand, within EX31_RS15745at 1.355 kb on + strand, within EX31_RS15745at 1.363 kb on - strand, within EX31_RS15745at 1.423 kb on - strand, within EX31_RS15745at 1.484 kb on - strand, within EX31_RS15745at 1.509 kb on + strand, within EX31_RS15745at 1.531 kb on + strand, within EX31_RS15745at 1.532 kb on - strand, within EX31_RS15745at 1.560 kb on - strand, within EX31_RS15745at 1.560 kb on - strand, within EX31_RS15745at 1.560 kb on - strand, within EX31_RS15745at 1.560 kb on - strand, within EX31_RS15745at 1.605 kb on - strand, within EX31_RS15745at 1.605 kb on - strand, within EX31_RS15745at 1.605 kb on - strand, within EX31_RS15745at 1.605 kb on - strand, within EX31_RS15745at 1.611 kb on - strand, within EX31_RS15745at 1.624 kb on + strand, within EX31_RS15745at 1.624 kb on + strand, within EX31_RS15745at 1.625 kb on - strand, within EX31_RS15745at 1.625 kb on - strand, within EX31_RS15745at 1.625 kb on - strand, within EX31_RS15745at 1.626 kb on + strand, within EX31_RS15745at 1.626 kb on + strand, within EX31_RS15745at 1.626 kb on + strand, within EX31_RS15745at 1.626 kb on + strand, within EX31_RS15745at 1.626 kb on + strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.627 kb on - strand, within EX31_RS15745at 1.677 kb on + strand, within EX31_RS15745at 1.722 kb on + strand, within EX31_RS15745at 1.723 kb on - strand, within EX31_RS15745at 1.723 kb on - strand, within EX31_RS15745at 1.737 kb on + strand, within EX31_RS15745at 1.738 kb on - strand, within EX31_RS15745at 1.738 kb on - strand, within EX31_RS15745at 1.758 kb on + strand, within EX31_RS15745at 1.759 kb on - strand, within EX31_RS15745at 1.759 kb on - strand, within EX31_RS15745at 1.803 kb on + strand, within EX31_RS15745at 1.803 kb on + strand, within EX31_RS15745at 1.856 kb on + strand, within EX31_RS15745at 1.857 kb on - strand, within EX31_RS15745at 1.936 kb on + strandat 1.946 kb on + strandat 1.946 kb on + strandat 1.963 kb on - strandat 1.973 kb on - strandat 1.974 kb on + strandat 1.975 kb on - strandat 1.975 kb on - strandat 1.979 kb on - strandat 2.014 kb on + strand, within EX31_RS15750at 2.015 kb on - strand, within EX31_RS15750at 2.015 kb on - strand, within EX31_RS15750at 2.015 kb on - strand, within EX31_RS15750at 2.030 kb on + strand, within EX31_RS15750at 2.030 kb on + strand, within EX31_RS15750at 2.033 kb on - strand, within EX31_RS15750at 2.068 kb on - strand, within EX31_RS15750at 2.076 kb on + strand, within EX31_RS15750at 2.080 kb on + strand, within EX31_RS15750at 2.083 kb on + strand, within EX31_RS15750at 2.106 kb on + strand, within EX31_RS15750at 2.116 kb on + strand, within EX31_RS15750at 2.116 kb on + strand, within EX31_RS15750at 2.183 kb on + strand, within EX31_RS15750at 2.208 kb on - strand, within EX31_RS15750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
remove
1,253 + -0.2
1,253 + -0.5
1,258 + +0.7
1,258 + -0.1
1,258 + +0.2
1,258 + -0.4
1,258 + -0.3
1,258 + +0.9
1,258 + -0.5
1,258 + -0.3
1,258 + +0.2
1,258 + +0.3
1,258 + +0.3
1,258 + +0.4
1,258 + -0.2
1,258 + -0.8
1,258 + +0.5
1,258 + +0.6
1,258 + -1.2
1,258 + -0.4
1,259 - +0.7
1,259 - +0.7
1,259 - -0.1
1,259 - -0.3
1,259 - +0.6
1,259 - +1.9
1,259 - +0.1
1,259 - -0.9
1,262 + -1.1
1,262 + -1.2
1,262 + -0.7
1,262 + -1.3
1,262 + -0.4
1,262 + -0.7
1,263 - -0.2
1,263 - +0.3
1,263 - -0.1
1,263 - +0.6
1,263 - -0.8
1,263 - +0.0
1,263 - +1.8
1,270 + +2.7
1,270 + +0.2
1,270 + +1.2
1,271 - +0.3
1,271 - -0.8
1,271 - +0.3
1,272 + -0.1
1,272 + -0.2
1,272 + +1.2
1,272 + +1.9
1,273 - +0.4
1,273 - -0.3
1,273 - -1.1
1,273 - -0.4
1,273 - +0.5
1,273 - -0.1
1,290 + +0.9
1,319 - +0.0
1,319 - +0.5
1,319 - -0.8
1,319 - +0.8
1,336 - +0.2
1,344 + EX31_RS15745 0.10 -0.2
1,345 - EX31_RS15745 0.10 -0.3
1,355 + EX31_RS15745 0.12 +0.6
1,355 + EX31_RS15745 0.12 +0.9
1,355 + EX31_RS15745 0.12 -1.1
1,363 - EX31_RS15745 0.13 -0.7
1,423 - EX31_RS15745 0.22 -1.5
1,484 - EX31_RS15745 0.32 +0.6
1,509 + EX31_RS15745 0.35 -0.4
1,531 + EX31_RS15745 0.39 +0.7
1,532 - EX31_RS15745 0.39 -1.0
1,560 - EX31_RS15745 0.43 +0.2
1,560 - EX31_RS15745 0.43 +0.1
1,560 - EX31_RS15745 0.43 +0.8
1,560 - EX31_RS15745 0.43 -1.6
1,605 - EX31_RS15745 0.50 -0.6
1,605 - EX31_RS15745 0.50 +2.3
1,605 - EX31_RS15745 0.50 +1.0
1,605 - EX31_RS15745 0.50 +0.4
1,611 - EX31_RS15745 0.51 -1.4
1,624 + EX31_RS15745 0.53 -1.2
1,624 + EX31_RS15745 0.53 -0.7
1,625 - EX31_RS15745 0.53 -1.0
1,625 - EX31_RS15745 0.53 -0.1
1,625 - EX31_RS15745 0.53 +1.2
1,626 + EX31_RS15745 0.53 +0.3
1,626 + EX31_RS15745 0.53 +1.7
1,626 + EX31_RS15745 0.53 -1.3
1,626 + EX31_RS15745 0.53 +0.8
1,626 + EX31_RS15745 0.53 -0.0
1,627 - EX31_RS15745 0.53 +0.9
1,627 - EX31_RS15745 0.53 +1.7
1,627 - EX31_RS15745 0.53 +0.6
1,627 - EX31_RS15745 0.53 +1.2
1,627 - EX31_RS15745 0.53 +0.1
1,627 - EX31_RS15745 0.53 +0.1
1,627 - EX31_RS15745 0.53 -1.2
1,627 - EX31_RS15745 0.53 -0.3
1,627 - EX31_RS15745 0.53 +0.9
1,677 + EX31_RS15745 0.61 +1.1
1,722 + EX31_RS15745 0.68 -0.9
1,723 - EX31_RS15745 0.68 -0.3
1,723 - EX31_RS15745 0.68 -0.2
1,737 + EX31_RS15745 0.70 -1.7
1,738 - EX31_RS15745 0.70 -0.0
1,738 - EX31_RS15745 0.70 -1.7
1,758 + EX31_RS15745 0.73 +0.4
1,759 - EX31_RS15745 0.73 +0.5
1,759 - EX31_RS15745 0.73 +0.7
1,803 + EX31_RS15745 0.80 -0.5
1,803 + EX31_RS15745 0.80 -0.3
1,856 + EX31_RS15745 0.88 +0.2
1,857 - EX31_RS15745 0.88 -1.1
1,936 + +0.7
1,946 + +0.2
1,946 + -0.0
1,963 - +0.9
1,973 - -1.9
1,974 + -0.4
1,975 - +1.9
1,975 - +0.6
1,979 - +0.9
2,014 + EX31_RS15750 0.13 +1.2
2,015 - EX31_RS15750 0.13 -0.1
2,015 - EX31_RS15750 0.13 +0.1
2,015 - EX31_RS15750 0.13 -0.1
2,030 + EX31_RS15750 0.15 -0.6
2,030 + EX31_RS15750 0.15 -0.7
2,033 - EX31_RS15750 0.15 -0.7
2,068 - EX31_RS15750 0.20 +0.3
2,076 + EX31_RS15750 0.21 +0.3
2,080 + EX31_RS15750 0.22 +0.5
2,083 + EX31_RS15750 0.22 -1.7
2,106 + EX31_RS15750 0.25 -0.5
2,116 + EX31_RS15750 0.27 -0.7
2,116 + EX31_RS15750 0.27 -0.1
2,183 + EX31_RS15750 0.36 +1.1
2,208 - EX31_RS15750 0.39 +0.8

Or see this region's nucleotide sequence