Strain Fitness in Rahnella sp. WP5 around EX31_RS13965

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13960 and EX31_RS13965 overlap by 8 nucleotidesEX31_RS13965 and EX31_RS13970 are separated by 46 nucleotides EX31_RS13960: EX31_RS13960 - iron ABC transporter permease, at 55,618 to 56,592 _RS13960 EX31_RS13965: EX31_RS13965 - heme ABC transporter ATP-binding protein, at 56,585 to 57,373 _RS13965 EX31_RS13970: EX31_RS13970 - YdiU family protein, at 57,420 to 58,874 _RS13970 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1 2 3at 55.722 kb on + strand, within EX31_RS13960at 55.722 kb on + strand, within EX31_RS13960at 55.896 kb on + strand, within EX31_RS13960at 55.899 kb on - strand, within EX31_RS13960at 55.899 kb on - strand, within EX31_RS13960at 55.937 kb on - strand, within EX31_RS13960at 55.944 kb on + strand, within EX31_RS13960at 55.944 kb on + strand, within EX31_RS13960at 55.945 kb on - strand, within EX31_RS13960at 55.993 kb on - strand, within EX31_RS13960at 56.030 kb on + strand, within EX31_RS13960at 56.089 kb on + strand, within EX31_RS13960at 56.090 kb on - strand, within EX31_RS13960at 56.090 kb on - strand, within EX31_RS13960at 56.111 kb on + strand, within EX31_RS13960at 56.235 kb on + strand, within EX31_RS13960at 56.246 kb on + strand, within EX31_RS13960at 56.247 kb on - strand, within EX31_RS13960at 56.266 kb on + strand, within EX31_RS13960at 56.267 kb on - strand, within EX31_RS13960at 56.303 kb on + strand, within EX31_RS13960at 56.423 kb on + strand, within EX31_RS13960at 56.545 kb on + strandat 56.737 kb on + strand, within EX31_RS13965at 56.737 kb on + strand, within EX31_RS13965at 56.750 kb on + strand, within EX31_RS13965at 56.840 kb on - strand, within EX31_RS13965at 56.854 kb on + strand, within EX31_RS13965at 56.854 kb on + strand, within EX31_RS13965at 56.854 kb on + strand, within EX31_RS13965at 56.854 kb on + strand, within EX31_RS13965at 56.854 kb on + strand, within EX31_RS13965at 56.855 kb on - strand, within EX31_RS13965at 56.873 kb on - strand, within EX31_RS13965at 56.886 kb on + strand, within EX31_RS13965at 56.886 kb on + strand, within EX31_RS13965at 56.886 kb on + strand, within EX31_RS13965at 57.094 kb on + strand, within EX31_RS13965at 57.111 kb on + strand, within EX31_RS13965at 57.114 kb on - strand, within EX31_RS13965at 57.151 kb on - strand, within EX31_RS13965at 57.212 kb on + strand, within EX31_RS13965at 57.212 kb on + strand, within EX31_RS13965at 57.213 kb on - strand, within EX31_RS13965at 57.213 kb on - strand, within EX31_RS13965at 57.436 kb on - strandat 57.502 kb on + strandat 57.546 kb on - strandat 57.586 kb on + strand, within EX31_RS13970at 57.600 kb on - strand, within EX31_RS13970at 57.612 kb on - strand, within EX31_RS13970at 57.651 kb on - strand, within EX31_RS13970at 57.890 kb on - strand, within EX31_RS13970at 58.016 kb on - strand, within EX31_RS13970at 58.052 kb on + strand, within EX31_RS13970at 58.054 kb on + strand, within EX31_RS13970at 58.121 kb on + strand, within EX31_RS13970at 58.121 kb on + strand, within EX31_RS13970at 58.122 kb on - strand, within EX31_RS13970at 58.122 kb on - strand, within EX31_RS13970at 58.122 kb on - strand, within EX31_RS13970at 58.157 kb on + strand, within EX31_RS13970at 58.279 kb on + strand, within EX31_RS13970at 58.279 kb on + strand, within EX31_RS13970at 58.279 kb on + strand, within EX31_RS13970at 58.280 kb on - strand, within EX31_RS13970at 58.280 kb on - strand, within EX31_RS13970at 58.280 kb on - strand, within EX31_RS13970at 58.280 kb on - strand, within EX31_RS13970at 58.280 kb on - strand, within EX31_RS13970at 58.280 kb on - strand, within EX31_RS13970at 58.321 kb on + strand, within EX31_RS13970at 58.321 kb on + strand, within EX31_RS13970

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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55,722 + EX31_RS13960 0.11 -0.9
55,722 + EX31_RS13960 0.11 +0.1
55,896 + EX31_RS13960 0.29 +0.5
55,899 - EX31_RS13960 0.29 +3.1
55,899 - EX31_RS13960 0.29 +0.1
55,937 - EX31_RS13960 0.33 +0.7
55,944 + EX31_RS13960 0.33 -0.9
55,944 + EX31_RS13960 0.33 +0.3
55,945 - EX31_RS13960 0.34 -0.5
55,993 - EX31_RS13960 0.38 -0.9
56,030 + EX31_RS13960 0.42 -1.5
56,089 + EX31_RS13960 0.48 +0.1
56,090 - EX31_RS13960 0.48 +0.7
56,090 - EX31_RS13960 0.48 +1.7
56,111 + EX31_RS13960 0.51 +0.8
56,235 + EX31_RS13960 0.63 +0.2
56,246 + EX31_RS13960 0.64 +0.3
56,247 - EX31_RS13960 0.65 -0.1
56,266 + EX31_RS13960 0.66 +0.5
56,267 - EX31_RS13960 0.67 +0.1
56,303 + EX31_RS13960 0.70 -0.9
56,423 + EX31_RS13960 0.83 -0.1
56,545 + -1.2
56,737 + EX31_RS13965 0.19 +1.1
56,737 + EX31_RS13965 0.19 +0.1
56,750 + EX31_RS13965 0.21 +1.9
56,840 - EX31_RS13965 0.32 +0.6
56,854 + EX31_RS13965 0.34 +0.5
56,854 + EX31_RS13965 0.34 -1.0
56,854 + EX31_RS13965 0.34 +0.1
56,854 + EX31_RS13965 0.34 +0.5
56,854 + EX31_RS13965 0.34 +1.0
56,855 - EX31_RS13965 0.34 +1.2
56,873 - EX31_RS13965 0.37 +0.1
56,886 + EX31_RS13965 0.38 +0.8
56,886 + EX31_RS13965 0.38 +0.8
56,886 + EX31_RS13965 0.38 +2.1
57,094 + EX31_RS13965 0.65 +0.8
57,111 + EX31_RS13965 0.67 +0.1
57,114 - EX31_RS13965 0.67 +0.1
57,151 - EX31_RS13965 0.72 +1.5
57,212 + EX31_RS13965 0.79 -0.5
57,212 + EX31_RS13965 0.79 +0.5
57,213 - EX31_RS13965 0.80 +0.8
57,213 - EX31_RS13965 0.80 +1.7
57,436 - +0.7
57,502 + +0.7
57,546 - +0.1
57,586 + EX31_RS13970 0.11 +0.9
57,600 - EX31_RS13970 0.12 -0.5
57,612 - EX31_RS13970 0.13 +1.1
57,651 - EX31_RS13970 0.16 +1.1
57,890 - EX31_RS13970 0.32 +0.1
58,016 - EX31_RS13970 0.41 +0.2
58,052 + EX31_RS13970 0.43 +0.1
58,054 + EX31_RS13970 0.44 -1.5
58,121 + EX31_RS13970 0.48 +1.4
58,121 + EX31_RS13970 0.48 +0.1
58,122 - EX31_RS13970 0.48 +0.8
58,122 - EX31_RS13970 0.48 +1.5
58,122 - EX31_RS13970 0.48 -0.5
58,157 + EX31_RS13970 0.51 -1.5
58,279 + EX31_RS13970 0.59 +0.7
58,279 + EX31_RS13970 0.59 -0.9
58,279 + EX31_RS13970 0.59 -0.9
58,280 - EX31_RS13970 0.59 +0.1
58,280 - EX31_RS13970 0.59 +1.1
58,280 - EX31_RS13970 0.59 -2.0
58,280 - EX31_RS13970 0.59 +0.5
58,280 - EX31_RS13970 0.59 +0.5
58,280 - EX31_RS13970 0.59 +0.9
58,321 + EX31_RS13970 0.62 +2.4
58,321 + EX31_RS13970 0.62 +1.1

Or see this region's nucleotide sequence