Strain Fitness in Rahnella sp. WP5 around EX31_RS12875

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12875 and EX31_RS12880 are separated by 179 nucleotides EX31_RS12875: EX31_RS12875 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 361 to 927 _RS12875 EX31_RS12880: EX31_RS12880 - methionine ABC transporter ATP-binding protein MetN, at 1,107 to 2,138 _RS12880 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1 2at 0.287 kb on + strandat 0.287 kb on + strandat 0.287 kb on + strandat 0.287 kb on + strandat 0.320 kb on + strandat 0.321 kb on - strandat 0.321 kb on - strandat 0.321 kb on - strandat 0.329 kb on - strandat 0.329 kb on - strandat 0.380 kb on - strandat 0.380 kb on - strandat 0.381 kb on + strandat 0.413 kb on - strandat 0.475 kb on - strand, within EX31_RS12875at 0.508 kb on - strand, within EX31_RS12875at 0.532 kb on - strand, within EX31_RS12875at 0.532 kb on - strand, within EX31_RS12875at 0.533 kb on + strand, within EX31_RS12875at 0.660 kb on - strand, within EX31_RS12875at 0.755 kb on - strand, within EX31_RS12875at 0.860 kb on - strand, within EX31_RS12875at 0.860 kb on - strand, within EX31_RS12875at 0.863 kb on + strand, within EX31_RS12875at 0.864 kb on - strand, within EX31_RS12875at 0.962 kb on + strandat 1.064 kb on + strandat 1.065 kb on - strandat 1.106 kb on + strandat 1.106 kb on + strandat 1.106 kb on + strandat 1.113 kb on - strandat 1.113 kb on - strandat 1.113 kb on - strandat 1.121 kb on + strandat 1.121 kb on + strandat 1.121 kb on + strandat 1.246 kb on + strand, within EX31_RS12880at 1.246 kb on + strand, within EX31_RS12880at 1.246 kb on + strand, within EX31_RS12880at 1.246 kb on + strand, within EX31_RS12880at 1.246 kb on + strand, within EX31_RS12880at 1.247 kb on - strand, within EX31_RS12880at 1.247 kb on - strand, within EX31_RS12880at 1.249 kb on + strand, within EX31_RS12880at 1.249 kb on + strand, within EX31_RS12880at 1.249 kb on + strand, within EX31_RS12880at 1.250 kb on - strand, within EX31_RS12880at 1.280 kb on + strand, within EX31_RS12880at 1.379 kb on + strand, within EX31_RS12880at 1.457 kb on + strand, within EX31_RS12880at 1.457 kb on + strand, within EX31_RS12880at 1.457 kb on + strand, within EX31_RS12880at 1.457 kb on + strand, within EX31_RS12880at 1.457 kb on + strand, within EX31_RS12880at 1.458 kb on - strand, within EX31_RS12880at 1.502 kb on + strand, within EX31_RS12880at 1.502 kb on + strand, within EX31_RS12880at 1.502 kb on + strand, within EX31_RS12880at 1.503 kb on - strand, within EX31_RS12880at 1.503 kb on - strand, within EX31_RS12880at 1.503 kb on - strand, within EX31_RS12880at 1.553 kb on - strand, within EX31_RS12880at 1.588 kb on + strand, within EX31_RS12880at 1.588 kb on + strand, within EX31_RS12880at 1.588 kb on + strand, within EX31_RS12880at 1.588 kb on + strand, within EX31_RS12880at 1.589 kb on - strand, within EX31_RS12880at 1.589 kb on - strand, within EX31_RS12880at 1.589 kb on - strand, within EX31_RS12880at 1.589 kb on - strand, within EX31_RS12880at 1.607 kb on + strand, within EX31_RS12880at 1.607 kb on + strand, within EX31_RS12880at 1.607 kb on + strand, within EX31_RS12880at 1.608 kb on - strand, within EX31_RS12880at 1.608 kb on - strand, within EX31_RS12880at 1.628 kb on + strand, within EX31_RS12880at 1.628 kb on + strand, within EX31_RS12880at 1.628 kb on + strand, within EX31_RS12880at 1.629 kb on - strand, within EX31_RS12880at 1.629 kb on - strand, within EX31_RS12880at 1.651 kb on + strand, within EX31_RS12880at 1.651 kb on + strand, within EX31_RS12880at 1.655 kb on - strand, within EX31_RS12880at 1.661 kb on + strand, within EX31_RS12880at 1.775 kb on + strand, within EX31_RS12880at 1.780 kb on + strand, within EX31_RS12880at 1.781 kb on - strand, within EX31_RS12880at 1.781 kb on - strand, within EX31_RS12880at 1.802 kb on + strand, within EX31_RS12880at 1.827 kb on - strand, within EX31_RS12880at 1.863 kb on + strand, within EX31_RS12880at 1.864 kb on - strand, within EX31_RS12880

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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287 + -0.1
287 + -1.5
287 + +1.4
287 + +0.7
320 + -2.3
321 - -1.9
321 - +0.8
321 - +0.1
329 - -0.0
329 - -0.6
380 - +1.2
380 - -1.4
381 + +0.1
413 - -0.2
475 - EX31_RS12875 0.20 -0.2
508 - EX31_RS12875 0.26 -0.2
532 - EX31_RS12875 0.30 -0.8
532 - EX31_RS12875 0.30 +1.4
533 + EX31_RS12875 0.30 -0.6
660 - EX31_RS12875 0.53 +1.4
755 - EX31_RS12875 0.69 -0.6
860 - EX31_RS12875 0.88 +0.4
860 - EX31_RS12875 0.88 +1.4
863 + EX31_RS12875 0.89 -0.6
864 - EX31_RS12875 0.89 -1.2
962 + +0.4
1,064 + +0.2
1,065 - +0.3
1,106 + -0.9
1,106 + +1.4
1,106 + +0.4
1,113 - +0.0
1,113 - +0.8
1,113 - +1.4
1,121 + -0.0
1,121 + +0.6
1,121 + -0.8
1,246 + EX31_RS12880 0.13 +1.4
1,246 + EX31_RS12880 0.13 +0.4
1,246 + EX31_RS12880 0.13 +0.3
1,246 + EX31_RS12880 0.13 +0.5
1,246 + EX31_RS12880 0.13 -0.1
1,247 - EX31_RS12880 0.14 +1.4
1,247 - EX31_RS12880 0.14 -1.0
1,249 + EX31_RS12880 0.14 -0.1
1,249 + EX31_RS12880 0.14 -1.6
1,249 + EX31_RS12880 0.14 -0.1
1,250 - EX31_RS12880 0.14 +1.4
1,280 + EX31_RS12880 0.17 -0.6
1,379 + EX31_RS12880 0.26 -0.4
1,457 + EX31_RS12880 0.34 +0.0
1,457 + EX31_RS12880 0.34 -1.0
1,457 + EX31_RS12880 0.34 +1.4
1,457 + EX31_RS12880 0.34 +0.7
1,457 + EX31_RS12880 0.34 +0.5
1,458 - EX31_RS12880 0.34 -0.2
1,502 + EX31_RS12880 0.38 -0.5
1,502 + EX31_RS12880 0.38 +0.8
1,502 + EX31_RS12880 0.38 -1.2
1,503 - EX31_RS12880 0.38 -0.5
1,503 - EX31_RS12880 0.38 +1.8
1,503 - EX31_RS12880 0.38 +1.7
1,553 - EX31_RS12880 0.43 +2.2
1,588 + EX31_RS12880 0.47 +0.6
1,588 + EX31_RS12880 0.47 +0.2
1,588 + EX31_RS12880 0.47 -0.8
1,588 + EX31_RS12880 0.47 +1.0
1,589 - EX31_RS12880 0.47 -0.2
1,589 - EX31_RS12880 0.47 +0.6
1,589 - EX31_RS12880 0.47 +0.4
1,589 - EX31_RS12880 0.47 +0.4
1,607 + EX31_RS12880 0.48 -0.3
1,607 + EX31_RS12880 0.48 -0.7
1,607 + EX31_RS12880 0.48 +0.7
1,608 - EX31_RS12880 0.49 -0.6
1,608 - EX31_RS12880 0.49 -2.5
1,628 + EX31_RS12880 0.50 -1.4
1,628 + EX31_RS12880 0.50 -1.8
1,628 + EX31_RS12880 0.50 +1.1
1,629 - EX31_RS12880 0.51 +0.4
1,629 - EX31_RS12880 0.51 +0.4
1,651 + EX31_RS12880 0.53 -0.2
1,651 + EX31_RS12880 0.53 +0.5
1,655 - EX31_RS12880 0.53 +0.4
1,661 + EX31_RS12880 0.54 -0.1
1,775 + EX31_RS12880 0.65 +0.0
1,780 + EX31_RS12880 0.65 -0.8
1,781 - EX31_RS12880 0.65 -0.2
1,781 - EX31_RS12880 0.65 +1.4
1,802 + EX31_RS12880 0.67 +0.6
1,827 - EX31_RS12880 0.70 +0.5
1,863 + EX31_RS12880 0.73 -1.3
1,864 - EX31_RS12880 0.73 +1.6

Or see this region's nucleotide sequence