Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12580 and EX31_RS12585 overlap by 19 nucleotides EX31_RS12585 and EX31_RS12590 are separated by 4 nucleotides EX31_RS12590 and EX31_RS12595 are separated by 18 nucleotides
EX31_RS12580: EX31_RS12580 - hypothetical protein, at 188,348 to 188,851
_RS12580
EX31_RS12585: EX31_RS12585 - hypothetical protein, at 188,833 to 189,681
_RS12585
EX31_RS12590: EX31_RS12590 - hypothetical protein, at 189,686 to 190,243
_RS12590
EX31_RS12595: EX31_RS12595 - type II and III secretion system protein, at 190,262 to 191,710
_RS12595
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 188.695 kb on + strand, within EX31_RS12580 at 188.695 kb on + strand, within EX31_RS12580 at 188.696 kb on - strand, within EX31_RS12580 at 188.728 kb on + strand, within EX31_RS12580 at 188.729 kb on - strand, within EX31_RS12580 at 188.729 kb on - strand, within EX31_RS12580 at 188.729 kb on - strand, within EX31_RS12580 at 188.729 kb on - strand, within EX31_RS12580 at 188.729 kb on - strand, within EX31_RS12580 at 188.729 kb on - strand, within EX31_RS12580 at 188.780 kb on - strand, within EX31_RS12580 at 188.948 kb on + strand, within EX31_RS12585 at 188.948 kb on + strand, within EX31_RS12585 at 188.949 kb on - strand, within EX31_RS12585 at 188.953 kb on + strand, within EX31_RS12585 at 188.954 kb on - strand, within EX31_RS12585 at 188.954 kb on - strand, within EX31_RS12585 at 188.959 kb on + strand, within EX31_RS12585 at 189.010 kb on - strand, within EX31_RS12585 at 189.049 kb on - strand, within EX31_RS12585 at 189.143 kb on - strand, within EX31_RS12585 at 189.470 kb on + strand, within EX31_RS12585 at 189.473 kb on + strand, within EX31_RS12585 at 189.473 kb on + strand, within EX31_RS12585 at 189.555 kb on - strand, within EX31_RS12585 at 189.555 kb on - strand, within EX31_RS12585 at 189.560 kb on + strand, within EX31_RS12585 at 189.560 kb on + strand, within EX31_RS12585 at 189.560 kb on + strand, within EX31_RS12585 at 189.561 kb on - strand, within EX31_RS12585 at 189.566 kb on + strand, within EX31_RS12585 at 189.676 kb on + strand at 189.705 kb on + strand at 189.821 kb on - strand, within EX31_RS12590 at 189.867 kb on + strand, within EX31_RS12590 at 190.119 kb on + strand, within EX31_RS12590 at 190.119 kb on + strand, within EX31_RS12590 at 190.119 kb on + strand, within EX31_RS12590 at 190.120 kb on - strand, within EX31_RS12590 at 190.120 kb on - strand, within EX31_RS12590 at 190.123 kb on + strand, within EX31_RS12590 at 190.123 kb on + strand, within EX31_RS12590 at 190.124 kb on - strand, within EX31_RS12590 at 190.124 kb on - strand, within EX31_RS12590 at 190.124 kb on - strand, within EX31_RS12590 at 190.124 kb on - strand, within EX31_RS12590 at 190.124 kb on - strand, within EX31_RS12590 at 190.140 kb on - strand, within EX31_RS12590 at 190.141 kb on + strand, within EX31_RS12590 at 190.142 kb on - strand, within EX31_RS12590 at 190.161 kb on + strand, within EX31_RS12590 at 190.216 kb on + strand at 190.234 kb on + strand at 190.234 kb on + strand at 190.234 kb on + strand at 190.235 kb on - strand at 190.238 kb on + strand at 190.239 kb on - strand at 190.284 kb on + strand at 190.288 kb on - strand at 190.349 kb on + strand at 190.349 kb on + strand at 190.349 kb on + strand at 190.350 kb on - strand at 190.360 kb on - strand at 190.393 kb on - strand at 190.409 kb on + strand, within EX31_RS12595 at 190.410 kb on - strand, within EX31_RS12595 at 190.414 kb on + strand, within EX31_RS12595 at 190.414 kb on + strand, within EX31_RS12595 at 190.415 kb on - strand, within EX31_RS12595 at 190.415 kb on - strand, within EX31_RS12595 at 190.415 kb on - strand, within EX31_RS12595 at 190.490 kb on + strand, within EX31_RS12595 at 190.490 kb on + strand, within EX31_RS12595 at 190.490 kb on + strand, within EX31_RS12595 at 190.490 kb on + strand, within EX31_RS12595 at 190.490 kb on + strand, within EX31_RS12595 at 190.490 kb on + strand, within EX31_RS12595 at 190.490 kb on + strand, within EX31_RS12595 at 190.490 kb on + strand, within EX31_RS12595 at 190.490 kb on + strand, within EX31_RS12595 at 190.490 kb on + strand, within EX31_RS12595 at 190.490 kb on + strand, within EX31_RS12595 at 190.490 kb on + strand, within EX31_RS12595 at 190.491 kb on - strand, within EX31_RS12595 at 190.491 kb on - strand, within EX31_RS12595 at 190.491 kb on - strand, within EX31_RS12595 at 190.491 kb on - strand, within EX31_RS12595 at 190.492 kb on + strand, within EX31_RS12595 at 190.492 kb on + strand, within EX31_RS12595 at 190.493 kb on - strand, within EX31_RS12595 at 190.493 kb on - strand, within EX31_RS12595 at 190.493 kb on - strand, within EX31_RS12595 at 190.499 kb on + strand, within EX31_RS12595 at 190.514 kb on - strand, within EX31_RS12595 at 190.561 kb on + strand, within EX31_RS12595 at 190.561 kb on + strand, within EX31_RS12595 at 190.564 kb on + strand, within EX31_RS12595 at 190.564 kb on + strand, within EX31_RS12595 at 190.565 kb on - strand, within EX31_RS12595 at 190.567 kb on + strand, within EX31_RS12595 at 190.567 kb on + strand, within EX31_RS12595 at 190.568 kb on - strand, within EX31_RS12595 at 190.568 kb on - strand, within EX31_RS12595 at 190.568 kb on - strand, within EX31_RS12595 at 190.659 kb on + strand, within EX31_RS12595 at 190.659 kb on + strand, within EX31_RS12595 at 190.659 kb on + strand, within EX31_RS12595 at 190.659 kb on + strand, within EX31_RS12595 at 190.660 kb on - strand, within EX31_RS12595 at 190.660 kb on - strand, within EX31_RS12595 at 190.699 kb on + strand, within EX31_RS12595 at 190.700 kb on - strand, within EX31_RS12595 at 190.735 kb on + strand, within EX31_RS12595 at 190.735 kb on + strand, within EX31_RS12595 at 190.736 kb on - strand, within EX31_RS12595 at 190.736 kb on - strand, within EX31_RS12595 at 190.736 kb on - strand, within EX31_RS12595 at 190.745 kb on - strand, within EX31_RS12595 at 190.752 kb on + strand, within EX31_RS12595 at 190.752 kb on + strand, within EX31_RS12595 at 190.753 kb on - strand, within EX31_RS12595 at 190.764 kb on - strand, within EX31_RS12595 at 190.764 kb on - strand, within EX31_RS12595 at 190.823 kb on + strand, within EX31_RS12595 at 190.824 kb on - strand, within EX31_RS12595 at 190.828 kb on + strand, within EX31_RS12595 at 190.828 kb on + strand, within EX31_RS12595 at 190.829 kb on - strand, within EX31_RS12595 at 190.829 kb on - strand, within EX31_RS12595 at 190.843 kb on + strand, within EX31_RS12595 at 190.843 kb on + strand, within EX31_RS12595 at 190.843 kb on + strand, within EX31_RS12595 at 190.844 kb on - strand, within EX31_RS12595 at 190.844 kb on - strand, within EX31_RS12595 at 190.871 kb on + strand, within EX31_RS12595 at 190.871 kb on + strand, within EX31_RS12595 at 190.871 kb on + strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.872 kb on - strand, within EX31_RS12595 at 190.875 kb on + strand, within EX31_RS12595 at 190.875 kb on + strand, within EX31_RS12595 at 190.876 kb on - strand, within EX31_RS12595 at 190.876 kb on - strand, within EX31_RS12595 at 190.876 kb on - strand, within EX31_RS12595 at 190.883 kb on - strand, within EX31_RS12595 at 190.883 kb on - strand, within EX31_RS12595 at 190.900 kb on - strand, within EX31_RS12595 at 190.918 kb on + strand, within EX31_RS12595 at 190.936 kb on + strand, within EX31_RS12595 at 190.938 kb on + strand, within EX31_RS12595 at 190.961 kb on - strand, within EX31_RS12595 at 191.002 kb on + strand, within EX31_RS12595 at 191.002 kb on + strand, within EX31_RS12595 at 191.004 kb on + strand, within EX31_RS12595 at 191.004 kb on + strand, within EX31_RS12595 at 191.004 kb on + strand, within EX31_RS12595 at 191.048 kb on - strand, within EX31_RS12595 at 191.054 kb on - strand, within EX31_RS12595 at 191.058 kb on + strand, within EX31_RS12595 at 191.058 kb on + strand, within EX31_RS12595 at 191.058 kb on + strand, within EX31_RS12595 at 191.058 kb on + strand, within EX31_RS12595 at 191.058 kb on + strand, within EX31_RS12595 at 191.059 kb on - strand, within EX31_RS12595 at 191.059 kb on - strand, within EX31_RS12595 at 191.059 kb on - strand, within EX31_RS12595 at 191.059 kb on - strand, within EX31_RS12595 at 191.059 kb on - strand, within EX31_RS12595 at 191.059 kb on - strand, within EX31_RS12595 at 191.076 kb on + strand, within EX31_RS12595 at 191.076 kb on + strand, within EX31_RS12595 at 191.076 kb on + strand, within EX31_RS12595 at 191.077 kb on - strand, within EX31_RS12595 at 191.077 kb on - strand, within EX31_RS12595 at 191.077 kb on - strand, within EX31_RS12595 at 191.077 kb on - strand, within EX31_RS12595 at 191.156 kb on - strand, within EX31_RS12595 at 191.170 kb on + strand, within EX31_RS12595 at 191.174 kb on + strand, within EX31_RS12595 at 191.174 kb on + strand, within EX31_RS12595 at 191.175 kb on - strand, within EX31_RS12595 at 191.175 kb on - strand, within EX31_RS12595 at 191.175 kb on - strand, within EX31_RS12595 at 191.227 kb on + strand, within EX31_RS12595 at 191.227 kb on + strand, within EX31_RS12595 at 191.228 kb on - strand, within EX31_RS12595 at 191.228 kb on - strand, within EX31_RS12595 at 191.233 kb on - strand, within EX31_RS12595 at 191.233 kb on - strand, within EX31_RS12595 at 191.239 kb on + strand, within EX31_RS12595 at 191.239 kb on + strand, within EX31_RS12595 at 191.240 kb on - strand, within EX31_RS12595 at 191.240 kb on - strand, within EX31_RS12595 at 191.240 kb on - strand, within EX31_RS12595 at 191.241 kb on + strand, within EX31_RS12595 at 191.241 kb on + strand, within EX31_RS12595 at 191.241 kb on + strand, within EX31_RS12595 at 191.242 kb on - strand, within EX31_RS12595 at 191.242 kb on - strand, within EX31_RS12595
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 188,695 + EX31_RS12580 0.69 -0.9 188,695 + EX31_RS12580 0.69 -0.4 188,696 - EX31_RS12580 0.69 -0.1 188,728 + EX31_RS12580 0.75 +0.6 188,729 - EX31_RS12580 0.76 +0.5 188,729 - EX31_RS12580 0.76 +0.2 188,729 - EX31_RS12580 0.76 -0.7 188,729 - EX31_RS12580 0.76 -0.1 188,729 - EX31_RS12580 0.76 +0.6 188,729 - EX31_RS12580 0.76 +0.9 188,780 - EX31_RS12580 0.86 +0.5 188,948 + EX31_RS12585 0.14 +0.9 188,948 + EX31_RS12585 0.14 -0.7 188,949 - EX31_RS12585 0.14 +1.3 188,953 + EX31_RS12585 0.14 +0.7 188,954 - EX31_RS12585 0.14 +0.0 188,954 - EX31_RS12585 0.14 +0.4 188,959 + EX31_RS12585 0.15 -1.2 189,010 - EX31_RS12585 0.21 +0.4 189,049 - EX31_RS12585 0.25 -0.3 189,143 - EX31_RS12585 0.37 -0.8 189,470 + EX31_RS12585 0.75 -0.3 189,473 + EX31_RS12585 0.75 -0.4 189,473 + EX31_RS12585 0.75 +1.2 189,555 - EX31_RS12585 0.85 +0.3 189,555 - EX31_RS12585 0.85 -1.3 189,560 + EX31_RS12585 0.86 -0.1 189,560 + EX31_RS12585 0.86 +0.1 189,560 + EX31_RS12585 0.86 +0.5 189,561 - EX31_RS12585 0.86 -0.1 189,566 + EX31_RS12585 0.86 +0.3 189,676 + -0.0 189,705 + +0.5 189,821 - EX31_RS12590 0.24 -1.3 189,867 + EX31_RS12590 0.32 +1.1 190,119 + EX31_RS12590 0.78 +0.1 190,119 + EX31_RS12590 0.78 +2.2 190,119 + EX31_RS12590 0.78 +0.3 190,120 - EX31_RS12590 0.78 -1.3 190,120 - EX31_RS12590 0.78 -1.1 190,123 + EX31_RS12590 0.78 +3.1 190,123 + EX31_RS12590 0.78 +0.9 190,124 - EX31_RS12590 0.78 +0.7 190,124 - EX31_RS12590 0.78 +0.9 190,124 - EX31_RS12590 0.78 -0.1 190,124 - EX31_RS12590 0.78 +1.5 190,124 - EX31_RS12590 0.78 +1.5 190,140 - EX31_RS12590 0.81 +0.1 190,141 + EX31_RS12590 0.82 +2.9 190,142 - EX31_RS12590 0.82 -1.0 190,161 + EX31_RS12590 0.85 +0.5 190,216 + -0.8 190,234 + +0.9 190,234 + +2.2 190,234 + +0.3 190,235 - -1.4 190,238 + -0.8 190,239 - +0.6 190,284 + +1.0 190,288 - +0.9 190,349 + -0.2 190,349 + +1.2 190,349 + -1.0 190,350 - -0.5 190,360 - -1.9 190,393 - -0.1 190,409 + EX31_RS12595 0.10 -0.4 190,410 - EX31_RS12595 0.10 -0.8 190,414 + EX31_RS12595 0.10 +0.5 190,414 + EX31_RS12595 0.10 +0.6 190,415 - EX31_RS12595 0.11 +0.5 190,415 - EX31_RS12595 0.11 +2.8 190,415 - EX31_RS12595 0.11 -0.5 190,490 + EX31_RS12595 0.16 +1.6 190,490 + EX31_RS12595 0.16 -0.7 190,490 + EX31_RS12595 0.16 +0.2 190,490 + EX31_RS12595 0.16 -2.4 190,490 + EX31_RS12595 0.16 -1.0 190,490 + EX31_RS12595 0.16 +2.1 190,490 + EX31_RS12595 0.16 -0.8 190,490 + EX31_RS12595 0.16 -0.0 190,490 + EX31_RS12595 0.16 +0.7 190,490 + EX31_RS12595 0.16 -0.8 190,490 + EX31_RS12595 0.16 +3.3 190,490 + EX31_RS12595 0.16 +0.6 190,491 - EX31_RS12595 0.16 -0.4 190,491 - EX31_RS12595 0.16 -0.4 190,491 - EX31_RS12595 0.16 +1.5 190,491 - EX31_RS12595 0.16 -0.1 190,492 + EX31_RS12595 0.16 +0.6 190,492 + EX31_RS12595 0.16 +1.2 190,493 - EX31_RS12595 0.16 -1.2 190,493 - EX31_RS12595 0.16 -1.0 190,493 - EX31_RS12595 0.16 +0.3 190,499 + EX31_RS12595 0.16 +0.3 190,514 - EX31_RS12595 0.17 -0.2 190,561 + EX31_RS12595 0.21 -1.3 190,561 + EX31_RS12595 0.21 -1.5 190,564 + EX31_RS12595 0.21 -0.4 190,564 + EX31_RS12595 0.21 -2.0 190,565 - EX31_RS12595 0.21 +0.3 190,567 + EX31_RS12595 0.21 +1.3 190,567 + EX31_RS12595 0.21 +2.2 190,568 - EX31_RS12595 0.21 -0.5 190,568 - EX31_RS12595 0.21 -0.4 190,568 - EX31_RS12595 0.21 -0.1 190,659 + EX31_RS12595 0.27 -0.1 190,659 + EX31_RS12595 0.27 -0.1 190,659 + EX31_RS12595 0.27 +0.7 190,659 + EX31_RS12595 0.27 +0.8 190,660 - EX31_RS12595 0.27 -1.7 190,660 - EX31_RS12595 0.27 +0.5 190,699 + EX31_RS12595 0.30 +0.8 190,700 - EX31_RS12595 0.30 +1.2 190,735 + EX31_RS12595 0.33 -1.1 190,735 + EX31_RS12595 0.33 +3.5 190,736 - EX31_RS12595 0.33 +0.2 190,736 - EX31_RS12595 0.33 -0.1 190,736 - EX31_RS12595 0.33 +0.4 190,745 - EX31_RS12595 0.33 -2.1 190,752 + EX31_RS12595 0.34 -1.3 190,752 + EX31_RS12595 0.34 +0.7 190,753 - EX31_RS12595 0.34 -2.8 190,764 - EX31_RS12595 0.35 -2.2 190,764 - EX31_RS12595 0.35 -1.3 190,823 + EX31_RS12595 0.39 +0.4 190,824 - EX31_RS12595 0.39 -0.2 190,828 + EX31_RS12595 0.39 +0.4 190,828 + EX31_RS12595 0.39 +0.2 190,829 - EX31_RS12595 0.39 -1.9 190,829 - EX31_RS12595 0.39 -0.2 190,843 + EX31_RS12595 0.40 +0.3 190,843 + EX31_RS12595 0.40 +0.5 190,843 + EX31_RS12595 0.40 +0.3 190,844 - EX31_RS12595 0.40 -0.5 190,844 - EX31_RS12595 0.40 +0.2 190,871 + EX31_RS12595 0.42 +0.2 190,871 + EX31_RS12595 0.42 +0.2 190,871 + EX31_RS12595 0.42 +1.1 190,872 - EX31_RS12595 0.42 -0.0 190,872 - EX31_RS12595 0.42 -1.4 190,872 - EX31_RS12595 0.42 +0.4 190,872 - EX31_RS12595 0.42 -1.2 190,872 - EX31_RS12595 0.42 +3.1 190,872 - EX31_RS12595 0.42 -0.3 190,872 - EX31_RS12595 0.42 +0.8 190,872 - EX31_RS12595 0.42 +0.5 190,872 - EX31_RS12595 0.42 +0.6 190,872 - EX31_RS12595 0.42 -0.1 190,872 - EX31_RS12595 0.42 -1.5 190,872 - EX31_RS12595 0.42 +1.1 190,872 - EX31_RS12595 0.42 +0.5 190,872 - EX31_RS12595 0.42 +3.6 190,872 - EX31_RS12595 0.42 -1.3 190,875 + EX31_RS12595 0.42 -2.1 190,875 + EX31_RS12595 0.42 +0.5 190,876 - EX31_RS12595 0.42 -0.4 190,876 - EX31_RS12595 0.42 -1.4 190,876 - EX31_RS12595 0.42 +1.1 190,883 - EX31_RS12595 0.43 -0.1 190,883 - EX31_RS12595 0.43 +1.5 190,900 - EX31_RS12595 0.44 -0.3 190,918 + EX31_RS12595 0.45 +0.5 190,936 + EX31_RS12595 0.47 +0.1 190,938 + EX31_RS12595 0.47 +1.1 190,961 - EX31_RS12595 0.48 +0.3 191,002 + EX31_RS12595 0.51 +1.9 191,002 + EX31_RS12595 0.51 +1.3 191,004 + EX31_RS12595 0.51 -0.1 191,004 + EX31_RS12595 0.51 -1.3 191,004 + EX31_RS12595 0.51 +0.2 191,048 - EX31_RS12595 0.54 +0.5 191,054 - EX31_RS12595 0.55 +0.6 191,058 + EX31_RS12595 0.55 -0.5 191,058 + EX31_RS12595 0.55 -0.8 191,058 + EX31_RS12595 0.55 +0.6 191,058 + EX31_RS12595 0.55 +0.5 191,058 + EX31_RS12595 0.55 +0.7 191,059 - EX31_RS12595 0.55 -2.6 191,059 - EX31_RS12595 0.55 -0.1 191,059 - EX31_RS12595 0.55 -1.2 191,059 - EX31_RS12595 0.55 -2.0 191,059 - EX31_RS12595 0.55 -0.1 191,059 - EX31_RS12595 0.55 +0.7 191,076 + EX31_RS12595 0.56 -0.7 191,076 + EX31_RS12595 0.56 -0.1 191,076 + EX31_RS12595 0.56 -0.8 191,077 - EX31_RS12595 0.56 +0.2 191,077 - EX31_RS12595 0.56 -0.1 191,077 - EX31_RS12595 0.56 -0.1 191,077 - EX31_RS12595 0.56 -0.4 191,156 - EX31_RS12595 0.62 -0.1 191,170 + EX31_RS12595 0.63 +0.4 191,174 + EX31_RS12595 0.63 +0.5 191,174 + EX31_RS12595 0.63 -0.2 191,175 - EX31_RS12595 0.63 -1.2 191,175 - EX31_RS12595 0.63 -0.1 191,175 - EX31_RS12595 0.63 +0.3 191,227 + EX31_RS12595 0.67 -0.5 191,227 + EX31_RS12595 0.67 -2.0 191,228 - EX31_RS12595 0.67 +1.9 191,228 - EX31_RS12595 0.67 +1.5 191,233 - EX31_RS12595 0.67 +0.4 191,233 - EX31_RS12595 0.67 -0.2 191,239 + EX31_RS12595 0.67 -0.4 191,239 + EX31_RS12595 0.67 +1.1 191,240 - EX31_RS12595 0.67 -0.4 191,240 - EX31_RS12595 0.67 +0.9 191,240 - EX31_RS12595 0.67 +0.4 191,241 + EX31_RS12595 0.68 +0.7 191,241 + EX31_RS12595 0.68 +0.5 191,241 + EX31_RS12595 0.68 -1.7 191,242 - EX31_RS12595 0.68 -0.5 191,242 - EX31_RS12595 0.68 +0.5
Or see this region's nucleotide sequence