Strain Fitness in Rahnella sp. WP5 around EX31_RS11455

Experiment: Sucrose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS11450 and EX31_RS11455 overlap by 1 nucleotidesEX31_RS11455 and EX31_RS11460 are separated by 5 nucleotidesEX31_RS11460 and EX31_RS11465 overlap by 19 nucleotides EX31_RS11450: EX31_RS11450 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 224,464 to 225,546 _RS11450 EX31_RS11455: EX31_RS11455 - imidazole glycerol phosphate synthase subunit HisH, at 225,546 to 226,136 _RS11455 EX31_RS11460: EX31_RS11460 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 226,142 to 226,879 _RS11460 EX31_RS11465: EX31_RS11465 - imidazole glycerol phosphate synthase subunit HisF, at 226,861 to 227,634 _RS11465 Position (kb) 225 226 227Strain fitness (log2 ratio) -3 -2 -1 0 1at 224.600 kb on + strand, within EX31_RS11450at 224.601 kb on - strand, within EX31_RS11450at 224.834 kb on + strand, within EX31_RS11450at 224.834 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.854 kb on + strand, within EX31_RS11450at 224.855 kb on - strand, within EX31_RS11450at 225.087 kb on + strand, within EX31_RS11450at 225.087 kb on + strand, within EX31_RS11450at 225.087 kb on + strand, within EX31_RS11450at 225.087 kb on + strand, within EX31_RS11450at 225.088 kb on - strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.151 kb on + strand, within EX31_RS11450at 225.152 kb on - strand, within EX31_RS11450at 225.225 kb on + strand, within EX31_RS11450at 225.320 kb on - strand, within EX31_RS11450at 225.334 kb on - strand, within EX31_RS11450at 225.337 kb on + strand, within EX31_RS11450at 225.397 kb on + strand, within EX31_RS11450at 225.397 kb on + strand, within EX31_RS11450at 225.397 kb on + strand, within EX31_RS11450at 225.398 kb on - strand, within EX31_RS11450at 225.597 kb on + strandat 225.891 kb on - strand, within EX31_RS11455at 225.891 kb on - strand, within EX31_RS11455at 225.891 kb on - strand, within EX31_RS11455at 225.932 kb on - strand, within EX31_RS11455at 225.932 kb on - strand, within EX31_RS11455at 225.957 kb on + strand, within EX31_RS11455at 225.957 kb on + strand, within EX31_RS11455at 225.957 kb on + strand, within EX31_RS11455at 225.958 kb on - strand, within EX31_RS11455at 225.958 kb on - strand, within EX31_RS11455at 225.964 kb on - strand, within EX31_RS11455at 225.964 kb on - strand, within EX31_RS11455at 225.964 kb on - strand, within EX31_RS11455at 226.020 kb on + strand, within EX31_RS11455at 226.134 kb on + strandat 226.134 kb on + strandat 226.134 kb on + strandat 226.134 kb on + strandat 226.134 kb on + strandat 226.135 kb on - strandat 226.135 kb on - strandat 226.135 kb on - strandat 226.147 kb on + strandat 226.202 kb on + strandat 226.202 kb on + strandat 226.345 kb on - strand, within EX31_RS11460at 226.530 kb on + strand, within EX31_RS11460at 226.530 kb on + strand, within EX31_RS11460at 226.531 kb on - strand, within EX31_RS11460at 226.550 kb on - strand, within EX31_RS11460at 226.619 kb on + strand, within EX31_RS11460at 226.620 kb on - strand, within EX31_RS11460at 226.657 kb on + strand, within EX31_RS11460at 226.840 kb on + strandat 226.841 kb on - strandat 226.877 kb on + strandat 226.922 kb on + strandat 226.922 kb on + strandat 226.922 kb on + strandat 227.008 kb on + strand, within EX31_RS11465at 227.008 kb on + strand, within EX31_RS11465at 227.039 kb on + strand, within EX31_RS11465at 227.047 kb on - strand, within EX31_RS11465at 227.076 kb on + strand, within EX31_RS11465at 227.076 kb on + strand, within EX31_RS11465at 227.082 kb on + strand, within EX31_RS11465at 227.109 kb on + strand, within EX31_RS11465at 227.109 kb on + strand, within EX31_RS11465at 227.109 kb on + strand, within EX31_RS11465

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
remove
224,600 + EX31_RS11450 0.13 -2.1
224,601 - EX31_RS11450 0.13 -2.5
224,834 + EX31_RS11450 0.34 -0.4
224,834 + EX31_RS11450 0.34 -2.0
224,854 + EX31_RS11450 0.36 -0.4
224,854 + EX31_RS11450 0.36 -1.6
224,854 + EX31_RS11450 0.36 -1.6
224,854 + EX31_RS11450 0.36 -0.8
224,854 + EX31_RS11450 0.36 -2.3
224,854 + EX31_RS11450 0.36 -1.8
224,854 + EX31_RS11450 0.36 -2.0
224,855 - EX31_RS11450 0.36 -1.6
225,087 + EX31_RS11450 0.58 +0.6
225,087 + EX31_RS11450 0.58 -0.4
225,087 + EX31_RS11450 0.58 -1.8
225,087 + EX31_RS11450 0.58 +1.2
225,088 - EX31_RS11450 0.58 -1.8
225,151 + EX31_RS11450 0.63 -2.6
225,151 + EX31_RS11450 0.63 -0.4
225,151 + EX31_RS11450 0.63 -2.5
225,151 + EX31_RS11450 0.63 -1.6
225,151 + EX31_RS11450 0.63 -2.7
225,151 + EX31_RS11450 0.63 -2.9
225,151 + EX31_RS11450 0.63 -1.4
225,151 + EX31_RS11450 0.63 -1.6
225,152 - EX31_RS11450 0.64 -0.8
225,225 + EX31_RS11450 0.70 +0.2
225,320 - EX31_RS11450 0.79 -0.4
225,334 - EX31_RS11450 0.80 -1.1
225,337 + EX31_RS11450 0.81 -2.0
225,397 + EX31_RS11450 0.86 +1.2
225,397 + EX31_RS11450 0.86 -1.4
225,397 + EX31_RS11450 0.86 -3.4
225,398 - EX31_RS11450 0.86 -2.1
225,597 + +0.2
225,891 - EX31_RS11455 0.58 -1.8
225,891 - EX31_RS11455 0.58 -1.4
225,891 - EX31_RS11455 0.58 +0.2
225,932 - EX31_RS11455 0.65 -3.0
225,932 - EX31_RS11455 0.65 +0.6
225,957 + EX31_RS11455 0.70 -1.8
225,957 + EX31_RS11455 0.70 -2.1
225,957 + EX31_RS11455 0.70 +0.2
225,958 - EX31_RS11455 0.70 -2.5
225,958 - EX31_RS11455 0.70 -1.1
225,964 - EX31_RS11455 0.71 -2.0
225,964 - EX31_RS11455 0.71 -0.6
225,964 - EX31_RS11455 0.71 -1.1
226,020 + EX31_RS11455 0.80 -2.1
226,134 + -0.8
226,134 + -2.7
226,134 + -0.4
226,134 + -1.1
226,134 + -2.3
226,135 - -1.4
226,135 - -2.0
226,135 - -1.1
226,147 + -2.0
226,202 + -0.8
226,202 + -0.8
226,345 - EX31_RS11460 0.28 -2.4
226,530 + EX31_RS11460 0.53 -2.3
226,530 + EX31_RS11460 0.53 +0.2
226,531 - EX31_RS11460 0.53 -1.4
226,550 - EX31_RS11460 0.55 +1.2
226,619 + EX31_RS11460 0.65 -0.8
226,620 - EX31_RS11460 0.65 -1.4
226,657 + EX31_RS11460 0.70 -2.0
226,840 + -2.3
226,841 - -2.1
226,877 + +0.2
226,922 + -0.8
226,922 + -0.4
226,922 + +1.2
227,008 + EX31_RS11465 0.19 -2.3
227,008 + EX31_RS11465 0.19 -1.8
227,039 + EX31_RS11465 0.23 +0.2
227,047 - EX31_RS11465 0.24 +0.2
227,076 + EX31_RS11465 0.28 -0.4
227,076 + EX31_RS11465 0.28 +1.2
227,082 + EX31_RS11465 0.29 -3.0
227,109 + EX31_RS11465 0.32 -2.4
227,109 + EX31_RS11465 0.32 -2.3
227,109 + EX31_RS11465 0.32 -1.8

Or see this region's nucleotide sequence