Strain Fitness in Rahnella sp. WP5 around EX31_RS11110

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11105 and EX31_RS11110 overlap by 11 nucleotidesEX31_RS11110 and EX31_RS11115 are separated by 29 nucleotidesEX31_RS11115 and EX31_RS11120 are separated by 13 nucleotides EX31_RS11105: EX31_RS11105 - cytosine deaminase, at 151,546 to 152,826 _RS11105 EX31_RS11110: EX31_RS11110 - RidA family protein, at 152,816 to 153,277 _RS11110 EX31_RS11115: EX31_RS11115 - creatininase family protein, at 153,307 to 154,188 _RS11115 EX31_RS11120: EX31_RS11120 - ABC transporter substrate-binding protein, at 154,202 to 155,185 _RS11120 Position (kb) 152 153 154Strain fitness (log2 ratio) -1 0 1 2 3at 151.899 kb on + strand, within EX31_RS11105at 152.133 kb on + strand, within EX31_RS11105at 152.298 kb on + strand, within EX31_RS11105at 152.299 kb on - strand, within EX31_RS11105at 152.299 kb on - strand, within EX31_RS11105at 152.522 kb on + strand, within EX31_RS11105at 152.522 kb on + strand, within EX31_RS11105at 152.551 kb on + strand, within EX31_RS11105at 152.551 kb on + strand, within EX31_RS11105at 152.565 kb on + strand, within EX31_RS11105at 152.565 kb on + strand, within EX31_RS11105at 152.793 kb on + strandat 152.793 kb on + strandat 152.793 kb on + strandat 152.855 kb on + strandat 152.856 kb on - strandat 153.039 kb on - strand, within EX31_RS11110at 153.039 kb on - strand, within EX31_RS11110at 153.143 kb on + strand, within EX31_RS11110at 153.320 kb on - strandat 153.520 kb on + strand, within EX31_RS11115at 153.520 kb on + strand, within EX31_RS11115at 153.521 kb on - strand, within EX31_RS11115at 153.541 kb on + strand, within EX31_RS11115at 153.564 kb on - strand, within EX31_RS11115at 153.849 kb on - strand, within EX31_RS11115at 154.226 kb on + strandat 154.227 kb on - strandat 154.227 kb on - strandat 154.227 kb on - strandat 154.227 kb on - strandat 154.227 kb on - strandat 154.227 kb on - strandat 154.227 kb on - strandat 154.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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151,899 + EX31_RS11105 0.28 -0.2
152,133 + EX31_RS11105 0.46 +0.6
152,298 + EX31_RS11105 0.59 +0.2
152,299 - EX31_RS11105 0.59 +1.2
152,299 - EX31_RS11105 0.59 +1.8
152,522 + EX31_RS11105 0.76 -0.4
152,522 + EX31_RS11105 0.76 +1.2
152,551 + EX31_RS11105 0.78 +0.2
152,551 + EX31_RS11105 0.78 +0.5
152,565 + EX31_RS11105 0.80 -1.6
152,565 + EX31_RS11105 0.80 +1.2
152,793 + -0.9
152,793 + +2.2
152,793 + +2.8
152,855 + +1.2
152,856 - -0.7
153,039 - EX31_RS11110 0.48 -1.4
153,039 - EX31_RS11110 0.48 -0.1
153,143 + EX31_RS11110 0.71 -1.6
153,320 - +1.2
153,520 + EX31_RS11115 0.24 +0.3
153,520 + EX31_RS11115 0.24 +0.5
153,521 - EX31_RS11115 0.24 -0.2
153,541 + EX31_RS11115 0.27 -0.0
153,564 - EX31_RS11115 0.29 +1.2
153,849 - EX31_RS11115 0.61 -0.5
154,226 + +1.2
154,227 - +0.6
154,227 - -0.8
154,227 - +1.0
154,227 - +2.2
154,227 - +0.7
154,227 - +0.9
154,227 - +0.8
154,227 - -0.9

Or see this region's nucleotide sequence