Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11105 and EX31_RS11110 overlap by 11 nucleotides EX31_RS11110 and EX31_RS11115 are separated by 29 nucleotides EX31_RS11115 and EX31_RS11120 are separated by 13 nucleotides
EX31_RS11105: EX31_RS11105 - cytosine deaminase, at 151,546 to 152,826
_RS11105
EX31_RS11110: EX31_RS11110 - RidA family protein, at 152,816 to 153,277
_RS11110
EX31_RS11115: EX31_RS11115 - creatininase family protein, at 153,307 to 154,188
_RS11115
EX31_RS11120: EX31_RS11120 - ABC transporter substrate-binding protein, at 154,202 to 155,185
_RS11120
Position (kb)
152
153
154 Strain fitness (log2 ratio)
-1
0
1
2
3 at 151.899 kb on + strand, within EX31_RS11105 at 152.133 kb on + strand, within EX31_RS11105 at 152.298 kb on + strand, within EX31_RS11105 at 152.299 kb on - strand, within EX31_RS11105 at 152.299 kb on - strand, within EX31_RS11105 at 152.522 kb on + strand, within EX31_RS11105 at 152.522 kb on + strand, within EX31_RS11105 at 152.551 kb on + strand, within EX31_RS11105 at 152.551 kb on + strand, within EX31_RS11105 at 152.565 kb on + strand, within EX31_RS11105 at 152.565 kb on + strand, within EX31_RS11105 at 152.793 kb on + strand at 152.793 kb on + strand at 152.793 kb on + strand at 152.855 kb on + strand at 152.856 kb on - strand at 153.039 kb on - strand, within EX31_RS11110 at 153.039 kb on - strand, within EX31_RS11110 at 153.143 kb on + strand, within EX31_RS11110 at 153.320 kb on - strand at 153.520 kb on + strand, within EX31_RS11115 at 153.520 kb on + strand, within EX31_RS11115 at 153.521 kb on - strand, within EX31_RS11115 at 153.541 kb on + strand, within EX31_RS11115 at 153.564 kb on - strand, within EX31_RS11115 at 153.849 kb on - strand, within EX31_RS11115 at 154.226 kb on + strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand at 154.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 151,899 + EX31_RS11105 0.28 -0.2 152,133 + EX31_RS11105 0.46 +0.6 152,298 + EX31_RS11105 0.59 +0.2 152,299 - EX31_RS11105 0.59 +1.2 152,299 - EX31_RS11105 0.59 +1.8 152,522 + EX31_RS11105 0.76 -0.4 152,522 + EX31_RS11105 0.76 +1.2 152,551 + EX31_RS11105 0.78 +0.2 152,551 + EX31_RS11105 0.78 +0.5 152,565 + EX31_RS11105 0.80 -1.6 152,565 + EX31_RS11105 0.80 +1.2 152,793 + -0.9 152,793 + +2.2 152,793 + +2.8 152,855 + +1.2 152,856 - -0.7 153,039 - EX31_RS11110 0.48 -1.4 153,039 - EX31_RS11110 0.48 -0.1 153,143 + EX31_RS11110 0.71 -1.6 153,320 - +1.2 153,520 + EX31_RS11115 0.24 +0.3 153,520 + EX31_RS11115 0.24 +0.5 153,521 - EX31_RS11115 0.24 -0.2 153,541 + EX31_RS11115 0.27 -0.0 153,564 - EX31_RS11115 0.29 +1.2 153,849 - EX31_RS11115 0.61 -0.5 154,226 + +1.2 154,227 - +0.6 154,227 - -0.8 154,227 - +1.0 154,227 - +2.2 154,227 - +0.7 154,227 - +0.9 154,227 - +0.8 154,227 - -0.9
Or see this region's nucleotide sequence