Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07995 and EX31_RS08000 are separated by 71 nucleotides EX31_RS08000 and EX31_RS08005 are separated by 9 nucleotides EX31_RS08005 and EX31_RS08010 are separated by 501 nucleotides
EX31_RS07995: EX31_RS07995 - galactarate dehydratase, at 88,768 to 90,339
_RS07995
EX31_RS08000: EX31_RS08000 - TonB system transport protein ExbD, at 90,411 to 90,845
_RS08000
EX31_RS08005: EX31_RS08005 - tol-pal system-associated acyl-CoA thioesterase, at 90,855 to 91,796
_RS08005
EX31_RS08010: EX31_RS08010 - TRAP transporter substrate-binding protein, at 92,298 to 93,275
_RS08010
Position (kb) 90
91
92 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 89.931 kb on + strand, within EX31_RS07995 at 89.932 kb on - strand, within EX31_RS07995 at 89.932 kb on - strand, within EX31_RS07995 at 90.097 kb on + strand, within EX31_RS07995 at 90.123 kb on + strand, within EX31_RS07995 at 90.123 kb on + strand, within EX31_RS07995 at 90.123 kb on + strand, within EX31_RS07995 at 90.138 kb on + strand, within EX31_RS07995 at 90.138 kb on + strand, within EX31_RS07995 at 90.138 kb on + strand, within EX31_RS07995 at 90.138 kb on + strand, within EX31_RS07995 at 90.139 kb on - strand, within EX31_RS07995 at 90.139 kb on - strand, within EX31_RS07995 at 90.300 kb on + strand at 90.300 kb on + strand at 90.300 kb on + strand at 90.301 kb on - strand at 90.318 kb on + strand at 90.357 kb on - strand at 90.401 kb on - strand at 90.401 kb on - strand at 90.412 kb on + strand at 90.413 kb on - strand at 90.413 kb on - strand at 90.590 kb on + strand, within EX31_RS08000 at 90.590 kb on + strand, within EX31_RS08000 at 90.590 kb on + strand, within EX31_RS08000 at 90.590 kb on + strand, within EX31_RS08000 at 90.590 kb on + strand, within EX31_RS08000 at 90.591 kb on - strand, within EX31_RS08000 at 90.591 kb on - strand, within EX31_RS08000 at 90.717 kb on + strand, within EX31_RS08000 at 90.718 kb on - strand, within EX31_RS08000 at 90.718 kb on - strand, within EX31_RS08000 at 90.718 kb on - strand, within EX31_RS08000 at 90.718 kb on - strand, within EX31_RS08000 at 90.718 kb on - strand, within EX31_RS08000 at 90.718 kb on - strand, within EX31_RS08000 at 90.759 kb on + strand, within EX31_RS08000 at 90.760 kb on - strand, within EX31_RS08000 at 90.777 kb on - strand, within EX31_RS08000 at 90.839 kb on + strand at 90.846 kb on - strand at 90.857 kb on - strand at 90.868 kb on - strand at 90.868 kb on - strand at 90.933 kb on + strand at 90.934 kb on - strand at 90.942 kb on - strand at 90.977 kb on - strand, within EX31_RS08005 at 90.977 kb on - strand, within EX31_RS08005 at 90.977 kb on - strand, within EX31_RS08005 at 90.977 kb on - strand, within EX31_RS08005 at 90.989 kb on + strand, within EX31_RS08005 at 90.989 kb on + strand, within EX31_RS08005 at 91.006 kb on + strand, within EX31_RS08005 at 91.006 kb on + strand, within EX31_RS08005 at 91.007 kb on - strand, within EX31_RS08005 at 91.007 kb on - strand, within EX31_RS08005 at 91.007 kb on - strand, within EX31_RS08005 at 91.007 kb on - strand, within EX31_RS08005 at 91.057 kb on - strand, within EX31_RS08005 at 91.216 kb on + strand, within EX31_RS08005 at 91.216 kb on + strand, within EX31_RS08005 at 91.216 kb on + strand, within EX31_RS08005 at 91.217 kb on - strand, within EX31_RS08005 at 91.217 kb on - strand, within EX31_RS08005 at 91.391 kb on + strand, within EX31_RS08005 at 91.392 kb on - strand, within EX31_RS08005 at 91.428 kb on - strand, within EX31_RS08005 at 91.485 kb on + strand, within EX31_RS08005 at 91.486 kb on - strand, within EX31_RS08005 at 91.486 kb on - strand, within EX31_RS08005 at 91.543 kb on + strand, within EX31_RS08005 at 91.543 kb on + strand, within EX31_RS08005 at 91.543 kb on + strand, within EX31_RS08005 at 91.543 kb on + strand, within EX31_RS08005 at 91.543 kb on + strand, within EX31_RS08005 at 91.543 kb on + strand, within EX31_RS08005 at 91.543 kb on + strand, within EX31_RS08005 at 91.543 kb on + strand, within EX31_RS08005 at 91.543 kb on + strand, within EX31_RS08005 at 91.544 kb on - strand, within EX31_RS08005 at 91.544 kb on - strand, within EX31_RS08005 at 91.544 kb on - strand, within EX31_RS08005 at 91.544 kb on - strand, within EX31_RS08005 at 91.544 kb on - strand, within EX31_RS08005 at 91.544 kb on - strand, within EX31_RS08005 at 91.544 kb on - strand, within EX31_RS08005 at 91.553 kb on + strand, within EX31_RS08005 at 91.554 kb on - strand, within EX31_RS08005 at 91.824 kb on + strand at 91.824 kb on + strand at 91.824 kb on + strand at 91.825 kb on - strand at 91.825 kb on - strand at 91.825 kb on - strand at 91.825 kb on - strand at 91.825 kb on - strand at 91.838 kb on - strand at 91.868 kb on - strand at 91.890 kb on + strand at 91.895 kb on - strand at 91.954 kb on + strand at 91.955 kb on - strand at 91.972 kb on + strand at 92.007 kb on + strand at 92.107 kb on + strand at 92.124 kb on + strand at 92.129 kb on + strand at 92.129 kb on + strand at 92.130 kb on - strand at 92.130 kb on - strand at 92.186 kb on - strand at 92.256 kb on + strand at 92.256 kb on + strand at 92.257 kb on - strand at 92.257 kb on - strand at 92.257 kb on - strand at 92.257 kb on - strand at 92.262 kb on + strand at 92.263 kb on - strand at 92.263 kb on - strand at 92.263 kb on - strand at 92.263 kb on - strand at 92.274 kb on - strand at 92.350 kb on + strand at 92.350 kb on + strand at 92.350 kb on + strand at 92.350 kb on + strand at 92.350 kb on + strand at 92.350 kb on + strand at 92.351 kb on - strand at 92.351 kb on - strand at 92.351 kb on - strand at 92.351 kb on - strand at 92.351 kb on - strand at 92.351 kb on - strand at 92.354 kb on + strand at 92.354 kb on + strand at 92.355 kb on - strand at 92.355 kb on - strand at 92.355 kb on - strand at 92.355 kb on - strand at 92.480 kb on + strand, within EX31_RS08010 at 92.480 kb on + strand, within EX31_RS08010 at 92.619 kb on + strand, within EX31_RS08010 at 92.621 kb on + strand, within EX31_RS08010 at 92.621 kb on + strand, within EX31_RS08010 at 92.622 kb on - strand, within EX31_RS08010 at 92.622 kb on - strand, within EX31_RS08010 at 92.622 kb on - strand, within EX31_RS08010 at 92.641 kb on + strand, within EX31_RS08010 at 92.642 kb on + strand, within EX31_RS08010 at 92.643 kb on - strand, within EX31_RS08010 at 92.643 kb on - strand, within EX31_RS08010 at 92.643 kb on - strand, within EX31_RS08010 at 92.643 kb on - strand, within EX31_RS08010 at 92.750 kb on + strand, within EX31_RS08010
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 89,931 + EX31_RS07995 0.74 +2.0 89,932 - EX31_RS07995 0.74 +0.1 89,932 - EX31_RS07995 0.74 -0.7 90,097 + EX31_RS07995 0.85 +0.6 90,123 + EX31_RS07995 0.86 +0.4 90,123 + EX31_RS07995 0.86 -0.7 90,123 + EX31_RS07995 0.86 +0.5 90,138 + EX31_RS07995 0.87 -0.8 90,138 + EX31_RS07995 0.87 -2.6 90,138 + EX31_RS07995 0.87 +0.2 90,138 + EX31_RS07995 0.87 -1.0 90,139 - EX31_RS07995 0.87 -0.4 90,139 - EX31_RS07995 0.87 +0.9 90,300 + -1.5 90,300 + -1.2 90,300 + -0.1 90,301 - +1.5 90,318 + -0.8 90,357 - +0.4 90,401 - +0.2 90,401 - +0.4 90,412 + -1.5 90,413 - -1.4 90,413 - -0.6 90,590 + EX31_RS08000 0.41 -0.7 90,590 + EX31_RS08000 0.41 +1.5 90,590 + EX31_RS08000 0.41 -1.5 90,590 + EX31_RS08000 0.41 -0.1 90,590 + EX31_RS08000 0.41 -1.5 90,591 - EX31_RS08000 0.41 +0.9 90,591 - EX31_RS08000 0.41 +1.0 90,717 + EX31_RS08000 0.70 +0.3 90,718 - EX31_RS08000 0.71 +0.6 90,718 - EX31_RS08000 0.71 -0.8 90,718 - EX31_RS08000 0.71 -0.8 90,718 - EX31_RS08000 0.71 -0.5 90,718 - EX31_RS08000 0.71 +0.2 90,718 - EX31_RS08000 0.71 +2.5 90,759 + EX31_RS08000 0.80 +1.5 90,760 - EX31_RS08000 0.80 +0.1 90,777 - EX31_RS08000 0.84 +0.4 90,839 + -0.4 90,846 - +0.2 90,857 - +1.5 90,868 - +0.4 90,868 - -1.2 90,933 + +2.5 90,934 - -0.1 90,942 - +0.8 90,977 - EX31_RS08005 0.13 +0.5 90,977 - EX31_RS08005 0.13 +0.7 90,977 - EX31_RS08005 0.13 +1.5 90,977 - EX31_RS08005 0.13 -0.5 90,989 + EX31_RS08005 0.14 +0.6 90,989 + EX31_RS08005 0.14 +0.4 91,006 + EX31_RS08005 0.16 +1.2 91,006 + EX31_RS08005 0.16 -0.1 91,007 - EX31_RS08005 0.16 -0.3 91,007 - EX31_RS08005 0.16 +1.2 91,007 - EX31_RS08005 0.16 -0.1 91,007 - EX31_RS08005 0.16 +2.5 91,057 - EX31_RS08005 0.21 +1.1 91,216 + EX31_RS08005 0.38 +3.1 91,216 + EX31_RS08005 0.38 +1.6 91,216 + EX31_RS08005 0.38 -0.7 91,217 - EX31_RS08005 0.38 -0.4 91,217 - EX31_RS08005 0.38 +2.2 91,391 + EX31_RS08005 0.57 +1.1 91,392 - EX31_RS08005 0.57 -1.7 91,428 - EX31_RS08005 0.61 +0.3 91,485 + EX31_RS08005 0.67 -1.1 91,486 - EX31_RS08005 0.67 +1.2 91,486 - EX31_RS08005 0.67 +0.1 91,543 + EX31_RS08005 0.73 -1.5 91,543 + EX31_RS08005 0.73 +0.9 91,543 + EX31_RS08005 0.73 +0.7 91,543 + EX31_RS08005 0.73 -0.5 91,543 + EX31_RS08005 0.73 +0.2 91,543 + EX31_RS08005 0.73 +1.8 91,543 + EX31_RS08005 0.73 -1.1 91,543 + EX31_RS08005 0.73 +1.4 91,543 + EX31_RS08005 0.73 +2.5 91,544 - EX31_RS08005 0.73 +0.8 91,544 - EX31_RS08005 0.73 +0.5 91,544 - EX31_RS08005 0.73 -0.3 91,544 - EX31_RS08005 0.73 -0.8 91,544 - EX31_RS08005 0.73 +0.8 91,544 - EX31_RS08005 0.73 -0.0 91,544 - EX31_RS08005 0.73 +2.2 91,553 + EX31_RS08005 0.74 +0.4 91,554 - EX31_RS08005 0.74 -0.7 91,824 + +0.4 91,824 + -0.5 91,824 + +1.1 91,825 - +2.1 91,825 - -0.6 91,825 - +1.2 91,825 - -0.3 91,825 - -0.8 91,838 - +0.8 91,868 - +0.5 91,890 + +0.5 91,895 - +0.5 91,954 + -0.3 91,955 - +1.4 91,972 + +0.6 92,007 + +1.1 92,107 + -0.2 92,124 + -0.4 92,129 + +0.4 92,129 + +0.9 92,130 - -1.2 92,130 - -0.2 92,186 - +0.3 92,256 + +0.3 92,256 + -0.4 92,257 - -0.6 92,257 - -1.3 92,257 - +1.3 92,257 - +0.7 92,262 + -0.3 92,263 - +0.4 92,263 - +1.3 92,263 - +1.5 92,263 - +0.2 92,274 - +1.3 92,350 + -0.3 92,350 + -0.2 92,350 + -0.1 92,350 + +0.1 92,350 + +1.2 92,350 + +0.7 92,351 - -1.0 92,351 - +0.8 92,351 - +1.0 92,351 - -0.5 92,351 - +0.5 92,351 - -0.4 92,354 + -1.0 92,354 + -0.9 92,355 - +0.5 92,355 - -2.5 92,355 - +1.4 92,355 - -1.0 92,480 + EX31_RS08010 0.19 +1.7 92,480 + EX31_RS08010 0.19 -1.5 92,619 + EX31_RS08010 0.33 +0.7 92,621 + EX31_RS08010 0.33 +1.5 92,621 + EX31_RS08010 0.33 +0.6 92,622 - EX31_RS08010 0.33 +1.9 92,622 - EX31_RS08010 0.33 -0.4 92,622 - EX31_RS08010 0.33 -0.4 92,641 + EX31_RS08010 0.35 +0.6 92,642 + EX31_RS08010 0.35 -0.5 92,643 - EX31_RS08010 0.35 +1.1 92,643 - EX31_RS08010 0.35 -0.5 92,643 - EX31_RS08010 0.35 +0.6 92,643 - EX31_RS08010 0.35 -0.1 92,750 + EX31_RS08010 0.46 +0.2
Or see this region's nucleotide sequence